Wall clock time and date at job start Tue Mar 31 2020 12:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46973 * 2 1 4 4 C 1.53008 * 109.47116 * 119.99413 * 2 1 3 5 5 H 1.09000 * 115.56186 * 274.31639 * 4 2 1 6 6 C 1.53003 * 117.49628 * 128.62456 * 4 2 1 7 7 C 1.52998 * 117.49253 * 60.00421 * 4 2 1 8 8 H 1.08998 * 117.50466 * 359.97438 * 7 4 2 9 9 C 1.53000 * 117.49650 * 214.97775 * 7 4 2 10 10 N 1.46501 * 109.47317 * 175.00558 * 9 7 4 11 11 C 1.34774 * 119.99759 * 180.27716 * 10 9 7 12 12 O 1.21579 * 120.00294 * 359.72116 * 11 10 9 13 13 N 1.34783 * 119.99813 * 179.71999 * 11 10 9 14 14 C 1.39943 * 120.00183 * 175.49194 * 13 11 10 15 15 C 1.38958 * 120.03327 * 214.85633 * 14 13 11 16 16 C 1.38164 * 120.06498 * 179.79156 * 15 14 13 17 17 C 1.38164 * 120.13713 * 0.46168 * 16 15 14 18 18 C 1.38909 * 120.06971 * 359.78925 * 17 16 15 19 19 O 1.35752 * 120.03448 * 179.97438 * 18 17 16 20 20 C 1.34831 * 117.00104 * 5.37348 * 19 18 17 21 21 H 1.07997 * 119.99442 * 354.95344 * 20 19 18 22 22 C 1.38646 * 120.00478 * 174.96236 * 20 19 18 23 23 N 1.31569 * 119.99799 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00473 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46700 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47051 * 120.00057 * 24 22 20 27 27 H 1.48500 * 109.47047 * 240.00137 * 24 22 20 28 28 C 1.38697 * 120.03200 * 35.12856 * 14 13 11 29 29 H 1.08993 * 109.47452 * 300.00269 * 1 2 3 30 30 H 1.09003 * 109.47087 * 60.00713 * 1 2 3 31 31 H 1.09005 * 109.47128 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47452 * 239.99731 * 2 1 3 33 33 H 1.09004 * 109.47475 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47003 * 299.99836 * 3 2 1 35 35 H 1.09002 * 109.47359 * 59.99821 * 3 2 1 36 36 H 1.08995 * 117.49802 * 145.02242 * 6 4 2 37 37 H 1.09001 * 117.49333 * 0.02562 * 6 4 2 38 38 H 1.09002 * 109.47305 * 55.00187 * 9 7 4 39 39 H 1.08998 * 109.47193 * 295.00163 * 9 7 4 40 40 H 0.97003 * 119.99639 * 359.97438 * 10 9 7 41 41 H 0.97005 * 119.99463 * 355.49383 * 13 11 10 42 42 H 1.08004 * 119.96728 * 359.97438 * 15 14 13 43 43 H 1.07991 * 119.93060 * 180.22755 * 16 15 14 44 44 H 1.08003 * 119.96933 * 179.76762 * 17 16 15 45 45 H 0.97003 * 119.99717 * 179.97438 * 23 22 20 46 46 H 1.08000 * 120.07509 * 359.95712 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 2.1270 -0.1060 2.1449 6 6 3.0742 -1.8312 1.0515 7 6 1.6357 -2.1851 1.4344 8 1 1.0061 -2.6344 0.6664 9 6 1.3846 -2.6736 2.8624 10 7 0.8962 -4.0544 2.8275 11 6 0.6007 -4.6938 3.9765 12 8 0.7441 -4.1265 5.0422 13 7 0.1460 -5.9622 3.9441 14 6 -0.0712 -6.6584 5.1384 15 6 0.1720 -8.0252 5.2008 16 6 -0.0381 -8.7124 6.3809 17 6 -0.4995 -8.0453 7.4994 18 6 -0.7494 -6.6801 7.4419 19 8 -1.2032 -6.0256 8.5412 20 6 -1.2844 -6.7340 9.6855 21 1 -1.0731 -7.7931 9.6809 22 6 -1.6394 -6.1031 10.8679 23 7 -1.8966 -4.8128 10.8734 24 14 -1.7527 -7.0847 12.4531 25 1 -1.4183 -8.5056 12.1802 26 1 -0.7969 -6.5327 13.4465 27 1 -3.1334 -6.9964 12.9924 28 6 -0.5348 -5.9860 6.2594 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.8416 -1.9464 1.8170 37 1 3.3914 -2.0474 0.0314 38 1 0.6392 -2.0365 3.3385 39 1 2.3143 -2.6313 3.4296 40 1 0.7815 -4.5068 1.9771 41 1 -0.0306 -6.3925 3.0928 42 1 0.5284 -8.5502 4.3269 43 1 0.1551 -9.7738 6.4280 44 1 -0.6664 -8.5859 8.4194 45 1 -2.1454 -4.3714 11.7006 46 1 -0.7281 -4.9245 6.2124 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836290630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:30 Heat of formation + Delta-G solvation = -38.059299 kcal Electronic energy + Delta-G solvation = -25367.465086 eV Core-core repulsion = 21643.469080 eV Total energy + Delta-G solvation = -3723.996006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.71033 -40.48585 -39.56487 -38.28304 -35.93717 -35.54291 -34.25935 -33.99402 -31.15238 -30.14496 -28.07737 -27.73042 -27.23726 -23.97589 -23.77360 -23.08421 -22.14018 -21.88458 -20.68434 -19.97045 -19.53952 -18.84676 -17.53583 -16.89201 -16.71489 -16.45029 -16.12991 -15.97772 -15.83646 -15.59014 -15.43414 -15.13487 -14.66493 -14.52831 -14.30450 -14.22145 -13.93411 -13.59266 -13.36855 -13.15147 -12.99468 -12.93914 -12.69609 -12.39190 -12.35604 -12.14252 -12.07801 -11.98779 -11.61122 -11.52679 -11.31457 -11.00303 -10.96590 -10.77089 -10.75748 -10.14182 -9.28823 -8.83480 -8.45615 -6.15228 0.49021 0.73047 1.34480 1.44313 1.50639 1.54996 2.03631 2.19103 2.76877 2.85237 3.13254 3.19702 3.55742 3.61703 3.84162 3.96736 4.14576 4.17426 4.19407 4.37137 4.39140 4.45080 4.45813 4.66257 4.68525 4.73628 4.74098 4.77771 4.84652 4.96129 5.01334 5.05712 5.07180 5.12957 5.18931 5.23736 5.30976 5.40173 5.43654 5.45433 5.49745 5.55220 5.66318 5.76710 5.98578 6.05370 6.24142 6.97965 7.00707 7.48720 7.81995 8.78703 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.002233 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.324599 B =12536.069199 C =13696.189491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.062 4.062 3 C -0.146 4.146 4 C -0.138 4.138 5 H 0.096 0.904 6 C -0.162 4.162 7 C -0.158 4.158 8 H 0.129 0.871 9 C 0.170 3.830 10 N -0.717 5.717 11 C 0.692 3.308 12 O -0.621 6.621 13 N -0.664 5.664 14 C 0.201 3.799 15 C -0.203 4.203 16 C -0.048 4.048 17 C -0.256 4.256 18 C 0.125 3.875 19 O -0.237 6.237 20 C -0.412 4.412 21 H 0.108 0.892 22 C -0.031 4.031 23 N -0.926 5.926 24 Si 1.025 2.975 25 H -0.246 1.246 26 H -0.270 1.270 27 H -0.268 1.268 28 C -0.215 4.215 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.417 0.583 41 H 0.428 0.572 42 H 0.166 0.834 43 H 0.161 0.839 44 H 0.123 0.877 45 H 0.272 0.728 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.195 1.288 -26.757 28.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.203 4.203 4 C -0.157 4.157 5 H 0.114 0.886 6 C -0.199 4.199 7 C -0.177 4.177 8 H 0.147 0.853 9 C 0.045 3.955 10 N -0.374 5.374 11 C 0.392 3.608 12 O -0.500 6.500 13 N -0.314 5.314 14 C 0.106 3.894 15 C -0.224 4.224 16 C -0.066 4.066 17 C -0.276 4.276 18 C 0.074 3.926 19 O -0.144 6.144 20 C -0.488 4.488 21 H 0.125 0.875 22 C -0.227 4.227 23 N -0.565 5.565 24 Si 0.844 3.156 25 H -0.169 1.169 26 H -0.195 1.195 27 H -0.193 1.193 28 C -0.237 4.237 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.255 0.745 41 H 0.268 0.732 42 H 0.183 0.817 43 H 0.179 0.821 44 H 0.141 0.859 45 H 0.081 0.919 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.231 2.252 -25.721 27.100 hybrid contribution -0.417 -0.035 0.577 0.713 sum 7.813 2.217 -25.144 26.424 Atomic orbital electron populations 1.21838 0.95044 1.01967 1.01642 1.20706 0.95542 0.96128 0.95631 1.21815 1.01224 0.95369 1.01888 1.22535 1.03052 0.89914 1.00191 0.88616 1.23303 0.91333 1.01757 1.03509 1.22391 1.00203 0.99436 0.95619 0.85298 1.20714 0.98324 0.80237 0.96189 1.44816 1.70574 1.15255 1.06789 1.16261 0.78309 0.81535 0.84716 1.91018 1.60635 1.67355 1.31010 1.42203 1.68262 1.12653 1.08246 1.17091 0.96054 0.91495 0.84807 1.20872 1.09687 0.91463 1.00393 1.21034 0.94443 1.00556 0.90581 1.21323 1.11359 0.93283 1.01647 1.19694 0.92575 0.92355 0.87961 1.83961 1.74163 1.39880 1.16357 1.21969 1.48736 0.94214 0.83892 0.87522 1.26752 0.95928 0.97317 1.02702 1.70248 1.45729 1.11251 1.29247 0.84445 0.78549 0.78124 0.74483 1.16886 1.19542 1.19261 1.20209 1.10642 0.99830 0.92968 0.93605 0.91975 0.92472 0.90115 0.92362 0.91896 0.93250 0.89133 0.86869 0.93182 0.92906 0.74518 0.73210 0.81701 0.82105 0.85892 0.91945 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.03 71.98 0.65 -1.05 16 2 C -0.06 -0.66 3.07 -10.79 -0.03 -0.69 16 3 C -0.15 -1.53 9.18 71.98 0.66 -0.87 16 4 C -0.14 -1.81 4.87 -10.79 -0.05 -1.86 16 5 H 0.10 1.50 8.11 -2.39 -0.02 1.48 16 6 C -0.16 -1.89 9.82 30.60 0.30 -1.58 16 7 C -0.16 -2.09 5.05 -10.79 -0.05 -2.15 16 8 H 0.13 1.25 7.50 -2.39 -0.02 1.23 16 9 C 0.17 3.63 5.96 86.38 0.51 4.14 16 10 N -0.72 -15.10 5.56 -478.54 -2.66 -17.76 16 11 C 0.69 22.44 8.41 179.05 1.51 23.94 16 12 O -0.62 -28.66 13.78 -3.97 -0.05 -28.72 16 13 N -0.66 -18.44 5.34 -317.24 -1.70 -20.13 16 14 C 0.20 7.45 6.30 38.13 0.24 7.69 16 15 C -0.20 -6.12 9.96 22.42 0.22 -5.90 16 16 C -0.05 -1.59 10.03 22.23 0.22 -1.36 16 17 C -0.26 -11.52 9.17 22.41 0.21 -11.32 16 18 C 0.13 6.84 6.64 22.56 0.15 6.99 16 19 O -0.24 -15.55 9.76 -22.77 -0.22 -15.77 16 20 C -0.41 -25.37 9.49 67.92 0.64 -24.72 16 21 H 0.11 5.92 5.20 -2.91 -0.02 5.90 16 22 C -0.03 -1.83 5.49 84.83 0.47 -1.36 16 23 N -0.93 -60.51 13.67 21.61 0.30 -60.22 16 24 Si 1.03 44.80 29.55 68.60 2.03 46.83 16 25 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 C -0.21 -10.78 8.64 22.51 0.19 -10.58 16 29 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.64 7.29 -2.38 -0.02 0.62 16 32 H 0.08 0.71 7.90 -2.39 -0.02 0.69 16 33 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 1.20 8.03 -2.39 -0.02 1.18 16 37 H 0.11 0.94 8.05 -2.39 -0.02 0.92 16 38 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.05 1.31 7.88 -2.39 -0.02 1.29 16 40 H 0.42 4.99 8.42 -92.71 -0.78 4.21 16 41 H 0.43 7.06 8.84 -92.70 -0.82 6.24 16 42 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 43 H 0.16 3.84 8.06 -2.92 -0.02 3.82 16 44 H 0.12 5.53 5.63 -2.91 -0.02 5.51 16 45 H 0.27 16.16 8.31 -92.71 -0.77 15.38 16 46 H 0.10 5.62 6.22 -2.91 -0.02 5.60 16 Total: -1.00 -88.09 382.43 2.93 -85.16 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: -0.59 Total: 31.31 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 5.84 Total: -20.69 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -4.06 Total: -98.11 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.28 Total: -44.49 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -88.09 2.93 -85.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836290630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.099 kcal (2) G-P(sol) polarization free energy of solvation -88.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds