Wall clock time and date at job start Tue Mar 31 2020 12:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46962 * 2 1 4 4 C 1.52999 * 109.47071 * 120.00115 * 2 1 3 5 5 H 1.08996 * 115.55284 * 274.32662 * 4 2 1 6 6 C 1.53000 * 117.51447 * 128.62945 * 4 2 1 7 7 C 1.52994 * 117.50120 * 59.99974 * 4 2 1 8 8 H 1.09004 * 117.49510 * 0.02562 * 7 4 2 9 9 N 1.46496 * 117.50428 * 215.00000 * 7 4 2 10 10 C 1.34771 * 120.00338 * 154.99929 * 9 7 4 11 11 O 1.21587 * 120.00083 * 359.97438 * 10 9 7 12 12 N 1.34780 * 120.00253 * 180.02562 * 10 9 7 13 13 C 1.46498 * 120.00298 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47235 * 179.97438 * 13 12 10 15 15 C 1.38305 * 119.92910 * 270.25475 * 14 13 12 16 16 C 1.38104 * 120.06272 * 180.25358 * 15 14 13 17 17 C 1.38874 * 119.93265 * 359.47314 * 16 15 14 18 18 O 1.35749 * 120.06890 * 180.29770 * 17 16 15 19 19 C 1.34834 * 117.00013 * 354.46142 * 18 17 16 20 20 H 1.07996 * 120.00021 * 5.05939 * 19 18 17 21 21 C 1.38654 * 119.99707 * 185.05824 * 19 18 17 22 22 N 1.31563 * 119.99570 * 180.02562 * 21 19 18 23 23 Si 1.86792 * 120.00407 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47217 * 90.00112 * 23 21 19 25 25 H 1.48504 * 109.47173 * 209.99833 * 23 21 19 26 26 H 1.48502 * 109.47283 * 329.99797 * 23 21 19 27 27 C 1.38882 * 119.86301 * 0.27303 * 17 16 15 28 28 C 1.38094 * 119.92975 * 0.02562 * 27 17 16 29 29 H 1.09006 * 109.46852 * 299.99648 * 1 2 3 30 30 H 1.08994 * 109.47176 * 59.99855 * 1 2 3 31 31 H 1.09001 * 109.46921 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46786 * 240.00170 * 2 1 3 33 33 H 1.09003 * 109.47349 * 300.00357 * 3 2 1 34 34 H 1.09006 * 109.47049 * 60.00473 * 3 2 1 35 35 H 1.08997 * 109.47402 * 179.97438 * 3 2 1 36 36 H 1.09005 * 117.49448 * 145.02683 * 6 4 2 37 37 H 1.08997 * 117.50145 * 0.02562 * 6 4 2 38 38 H 0.97004 * 119.99765 * 335.00519 * 9 7 4 39 39 H 0.97004 * 119.99849 * 0.02562 * 12 10 9 40 40 H 1.09006 * 109.47116 * 60.00072 * 13 12 10 41 41 H 1.08998 * 109.47244 * 300.00226 * 13 12 10 42 42 H 1.07990 * 119.96792 * 0.02562 * 15 14 13 43 43 H 1.08000 * 120.02708 * 179.74272 * 16 15 14 44 44 H 0.96992 * 119.99813 * 179.97438 * 22 21 19 45 45 H 1.08005 * 120.03486 * 180.02562 * 27 17 16 46 46 H 1.08006 * 119.96524 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1268 -0.1061 2.1448 6 6 3.0743 -1.8313 1.0518 7 6 1.6358 -2.1852 1.4343 8 1 1.0068 -2.6346 0.6658 9 7 1.3949 -2.6529 2.8015 10 6 0.5844 -3.7072 3.0201 11 8 0.0527 -4.2700 2.0826 12 7 0.3624 -4.1372 4.2781 13 6 -0.5191 -5.2829 4.5158 14 6 -0.5975 -5.5579 5.9954 15 6 0.3085 -6.4201 6.5860 16 6 0.2359 -6.6782 7.9407 17 6 -0.7412 -6.0626 8.7121 18 8 -0.8112 -6.3096 10.0451 19 6 0.0217 -7.2482 10.5383 20 1 0.7596 -7.7064 9.8965 21 6 -0.0692 -7.6251 11.8695 22 7 0.7438 -8.5406 12.3509 23 14 -1.3459 -6.8332 12.9795 24 1 -2.6035 -7.6213 12.9283 25 1 -0.8379 -6.8018 14.3745 26 1 -1.6114 -5.4468 12.5181 27 6 -1.6461 -5.1932 8.1170 28 6 -1.5722 -4.9440 6.7607 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 3.1300 1.4426 0.0005 36 1 3.8415 -1.9463 1.8175 37 1 3.3919 -2.0477 0.0318 38 1 1.8187 -2.2036 3.5495 39 1 0.7857 -3.6875 5.0261 40 1 -0.1215 -6.1595 4.0042 41 1 -1.5154 -5.0602 4.1339 42 1 1.0710 -6.8948 5.9865 43 1 0.9410 -7.3548 8.4006 44 1 0.6805 -8.8040 13.2822 45 1 -2.4069 -4.7126 8.7143 46 1 -2.2760 -4.2684 6.2973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838228395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:01 Heat of formation + Delta-G solvation = -21.381146 kcal Electronic energy + Delta-G solvation = -25042.990997 eV Core-core repulsion = 21319.718210 eV Total energy + Delta-G solvation = -3723.272787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.22218 -39.32208 -38.47480 -37.03484 -34.65621 -34.39082 -32.53208 -32.19702 -30.39479 -29.82853 -27.50323 -26.09706 -24.61968 -23.33270 -22.38166 -22.17785 -20.95693 -20.61189 -20.22124 -18.46156 -17.98289 -17.37846 -16.86790 -15.50825 -15.39122 -15.27050 -14.88565 -14.71264 -14.43808 -14.14279 -14.03091 -13.87486 -13.46768 -13.39710 -13.14061 -12.94079 -12.84490 -12.72860 -12.54590 -12.28388 -12.07741 -11.65400 -11.55141 -11.49373 -11.19971 -11.06960 -10.96586 -10.84010 -10.79193 -10.37108 -10.25563 -10.20970 -9.49791 -9.16164 -8.96483 -8.69053 -8.39090 -7.49827 -6.51065 -4.18096 1.89285 2.01562 2.69511 3.04589 3.15940 3.20035 3.33518 3.62974 4.08657 4.15588 4.33023 4.43498 4.47148 4.57696 4.71000 4.73448 4.92497 5.01074 5.01441 5.12885 5.21677 5.31720 5.36254 5.43084 5.51748 5.54161 5.55556 5.60836 5.69551 5.73474 5.79618 5.88181 5.97132 6.01888 6.02328 6.24142 6.35836 6.44188 6.52613 6.66719 6.81693 6.95362 7.11828 7.18066 7.48755 7.69469 7.92994 7.97279 8.56277 8.83439 9.44024 10.56075 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026894 B = 0.001891 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.876887 B =14799.658421 C =14881.660267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.064 4.064 3 C -0.144 4.144 4 C -0.157 4.157 5 H 0.105 0.895 6 C -0.192 4.192 7 C 0.110 3.890 8 H 0.137 0.863 9 N -0.721 5.721 10 C 0.705 3.295 11 O -0.595 6.595 12 N -0.737 5.737 13 C 0.196 3.804 14 C -0.206 4.206 15 C -0.051 4.051 16 C -0.225 4.225 17 C 0.167 3.833 18 O -0.213 6.213 19 C -0.392 4.392 20 H 0.108 0.892 21 C 0.064 3.936 22 N -0.875 5.875 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.259 1.259 27 C -0.196 4.196 28 C -0.055 4.055 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.397 0.603 39 H 0.397 0.603 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.134 0.866 44 H 0.281 0.719 45 H 0.118 0.882 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.435 16.331 -20.402 26.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 C -0.201 4.201 4 C -0.176 4.176 5 H 0.123 0.877 6 C -0.231 4.231 7 C 0.003 3.997 8 H 0.155 0.845 9 N -0.374 5.374 10 C 0.405 3.595 11 O -0.473 6.473 12 N -0.392 5.392 13 C 0.074 3.926 14 C -0.207 4.207 15 C -0.070 4.070 16 C -0.244 4.244 17 C 0.113 3.887 18 O -0.117 6.117 19 C -0.467 4.467 20 H 0.125 0.875 21 C -0.140 4.140 22 N -0.512 5.512 23 Si 0.732 3.268 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.183 1.183 27 C -0.215 4.215 28 C -0.074 4.074 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.231 0.769 39 H 0.231 0.769 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.129 0.871 43 H 0.152 0.848 44 H 0.091 0.909 45 H 0.136 0.864 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.837 15.710 -20.848 26.169 hybrid contribution 0.196 0.539 1.436 1.546 sum 2.033 16.250 -19.412 25.397 Atomic orbital electron populations 1.21833 0.94745 1.02264 1.01645 1.20692 0.95864 0.95911 0.95832 1.21807 1.01030 0.95516 1.01788 1.22935 1.03333 0.91191 1.00175 0.87655 1.23641 0.93439 1.02856 1.03207 1.21462 0.97510 0.95622 0.85135 0.84497 1.44497 1.51427 1.33689 1.07758 1.15940 0.79521 0.80191 0.83814 1.90904 1.54818 1.59535 1.42038 1.45479 1.52268 1.35446 1.06015 1.19855 0.93289 0.87145 0.92345 1.19296 1.01540 1.05700 0.94172 1.20713 0.96589 0.95629 0.94099 1.21284 1.02696 1.06262 0.94131 1.19185 0.92838 0.92920 0.83709 1.83575 1.57084 1.53221 1.17836 1.20788 1.13874 1.15800 0.96246 0.87492 1.24493 0.97563 0.95486 0.96421 1.69643 1.36665 1.28757 1.16140 0.86170 0.80862 0.80911 0.78902 1.19792 1.20691 1.18347 1.20213 1.02060 1.04528 0.94679 1.20544 0.96816 0.97454 0.92611 0.92636 0.92723 0.92278 0.90990 0.92621 0.92656 0.92601 0.88580 0.88076 0.76949 0.76876 0.91561 0.91575 0.87070 0.84794 0.90904 0.86370 0.86746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.03 37.16 0.34 -0.68 16 2 C -0.06 -0.40 3.07 -90.62 -0.28 -0.68 16 3 C -0.14 -0.78 9.18 37.16 0.34 -0.44 16 4 C -0.16 -1.06 5.07 -90.62 -0.46 -1.52 16 5 H 0.11 0.68 8.11 -51.93 -0.42 0.26 16 6 C -0.19 -1.35 10.10 -26.73 -0.27 -1.62 16 7 C 0.11 0.99 5.63 -67.94 -0.38 0.60 16 8 H 0.14 1.47 6.86 -51.93 -0.36 1.12 16 9 N -0.72 -6.98 5.57 -58.68 -0.33 -7.30 16 10 C 0.71 9.26 8.57 -86.92 -0.74 8.52 16 11 O -0.59 -10.10 15.91 5.29 0.08 -10.02 16 12 N -0.74 -8.87 5.55 -66.41 -0.37 -9.24 16 13 C 0.20 2.66 5.79 -5.19 -0.03 2.63 16 14 C -0.21 -3.12 5.25 -104.57 -0.55 -3.67 16 15 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 16 C -0.22 -4.55 9.17 -39.40 -0.36 -4.91 16 17 C 0.17 3.64 6.65 -39.11 -0.26 3.38 16 18 O -0.21 -5.40 8.59 0.04 0.00 -5.40 16 19 C -0.39 -10.67 9.95 30.89 0.31 -10.36 16 20 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 21 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 22 N -0.87 -24.61 13.96 55.48 0.77 -23.84 16 23 Si 0.91 21.05 28.62 -169.99 -4.86 16.18 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 27 C -0.20 -3.61 9.99 -39.40 -0.39 -4.00 16 28 C -0.06 -0.86 9.69 -39.61 -0.38 -1.25 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.47 7.29 -51.93 -0.38 0.10 16 32 H 0.07 0.44 7.90 -51.93 -0.41 0.03 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.64 8.05 -51.93 -0.42 0.23 16 38 H 0.40 2.87 8.84 -40.82 -0.36 2.51 16 39 H 0.40 4.11 8.48 -40.82 -0.35 3.77 16 40 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 41 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 44 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.12 2.04 8.06 -52.48 -0.42 1.62 16 46 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -30.39 385.97 -9.55 -39.94 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -7.05 Total: 7.46 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -3.61 Total: -13.60 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.08 Total: -40.38 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.08 Total: -15.42 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.86 Total: 16.18 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.39 -9.55 -39.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838228395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.559 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds