Wall clock time and date at job start Tue Mar 31 2020 12:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46962 * 2 1 4 4 C 1.52999 * 109.47071 * 120.00115 * 2 1 3 5 5 H 1.08996 * 115.55284 * 274.32662 * 4 2 1 6 6 C 1.53000 * 117.51447 * 128.62945 * 4 2 1 7 7 C 1.52994 * 117.50120 * 59.99974 * 4 2 1 8 8 H 1.09004 * 117.49510 * 0.02562 * 7 4 2 9 9 N 1.46496 * 117.50428 * 215.00000 * 7 4 2 10 10 C 1.34771 * 120.00338 * 154.99929 * 9 7 4 11 11 O 1.21587 * 120.00083 * 359.97438 * 10 9 7 12 12 N 1.34780 * 120.00253 * 180.02562 * 10 9 7 13 13 C 1.46498 * 120.00298 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47235 * 179.97438 * 13 12 10 15 15 C 1.38305 * 119.92910 * 270.25475 * 14 13 12 16 16 C 1.38104 * 120.06272 * 180.25358 * 15 14 13 17 17 C 1.38874 * 119.93265 * 359.47314 * 16 15 14 18 18 O 1.35749 * 120.06890 * 180.29770 * 17 16 15 19 19 C 1.34834 * 117.00013 * 354.46142 * 18 17 16 20 20 H 1.07996 * 120.00021 * 5.05939 * 19 18 17 21 21 C 1.38654 * 119.99707 * 185.05824 * 19 18 17 22 22 N 1.31563 * 119.99570 * 180.02562 * 21 19 18 23 23 Si 1.86792 * 120.00407 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47217 * 90.00112 * 23 21 19 25 25 H 1.48504 * 109.47173 * 209.99833 * 23 21 19 26 26 H 1.48502 * 109.47283 * 329.99797 * 23 21 19 27 27 C 1.38882 * 119.86301 * 0.27303 * 17 16 15 28 28 C 1.38094 * 119.92975 * 0.02562 * 27 17 16 29 29 H 1.09006 * 109.46852 * 299.99648 * 1 2 3 30 30 H 1.08994 * 109.47176 * 59.99855 * 1 2 3 31 31 H 1.09001 * 109.46921 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46786 * 240.00170 * 2 1 3 33 33 H 1.09003 * 109.47349 * 300.00357 * 3 2 1 34 34 H 1.09006 * 109.47049 * 60.00473 * 3 2 1 35 35 H 1.08997 * 109.47402 * 179.97438 * 3 2 1 36 36 H 1.09005 * 117.49448 * 145.02683 * 6 4 2 37 37 H 1.08997 * 117.50145 * 0.02562 * 6 4 2 38 38 H 0.97004 * 119.99765 * 335.00519 * 9 7 4 39 39 H 0.97004 * 119.99849 * 0.02562 * 12 10 9 40 40 H 1.09006 * 109.47116 * 60.00072 * 13 12 10 41 41 H 1.08998 * 109.47244 * 300.00226 * 13 12 10 42 42 H 1.07990 * 119.96792 * 0.02562 * 15 14 13 43 43 H 1.08000 * 120.02708 * 179.74272 * 16 15 14 44 44 H 0.96992 * 119.99813 * 179.97438 * 22 21 19 45 45 H 1.08005 * 120.03486 * 180.02562 * 27 17 16 46 46 H 1.08006 * 119.96524 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1268 -0.1061 2.1448 6 6 3.0743 -1.8313 1.0518 7 6 1.6358 -2.1852 1.4343 8 1 1.0068 -2.6346 0.6658 9 7 1.3949 -2.6529 2.8015 10 6 0.5844 -3.7072 3.0201 11 8 0.0527 -4.2700 2.0826 12 7 0.3624 -4.1372 4.2781 13 6 -0.5191 -5.2829 4.5158 14 6 -0.5975 -5.5579 5.9954 15 6 0.3085 -6.4201 6.5860 16 6 0.2359 -6.6782 7.9407 17 6 -0.7412 -6.0626 8.7121 18 8 -0.8112 -6.3096 10.0451 19 6 0.0217 -7.2482 10.5383 20 1 0.7596 -7.7064 9.8965 21 6 -0.0692 -7.6251 11.8695 22 7 0.7438 -8.5406 12.3509 23 14 -1.3459 -6.8332 12.9795 24 1 -2.6035 -7.6213 12.9283 25 1 -0.8379 -6.8018 14.3745 26 1 -1.6114 -5.4468 12.5181 27 6 -1.6461 -5.1932 8.1170 28 6 -1.5722 -4.9440 6.7607 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 3.1300 1.4426 0.0005 36 1 3.8415 -1.9463 1.8175 37 1 3.3919 -2.0477 0.0318 38 1 1.8187 -2.2036 3.5495 39 1 0.7857 -3.6875 5.0261 40 1 -0.1215 -6.1595 4.0042 41 1 -1.5154 -5.0602 4.1339 42 1 1.0710 -6.8948 5.9865 43 1 0.9410 -7.3548 8.4006 44 1 0.6805 -8.8040 13.2822 45 1 -2.4069 -4.7126 8.7143 46 1 -2.2760 -4.2684 6.2973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838228395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:01 Heat of formation + Delta-G solvation = -39.987280 kcal Electronic energy + Delta-G solvation = -25043.797820 eV Core-core repulsion = 21319.718210 eV Total energy + Delta-G solvation = -3724.079610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.25437 -40.82522 -39.27565 -38.53762 -35.64056 -35.33410 -34.44695 -33.04219 -31.87227 -31.16578 -27.99489 -27.75226 -26.12063 -23.90157 -23.71988 -23.17723 -22.05128 -21.85925 -20.83496 -19.86586 -19.41005 -19.06368 -17.74177 -16.81410 -16.48458 -16.28732 -16.07715 -15.83744 -15.74327 -15.59951 -15.31724 -15.00736 -14.74880 -14.50424 -14.28943 -14.06307 -13.97508 -13.71069 -13.53042 -13.35313 -13.11142 -13.01152 -12.58225 -12.47471 -12.32296 -12.23355 -12.12955 -11.94430 -11.82063 -11.59646 -11.39335 -11.30834 -10.93794 -10.90185 -10.19969 -9.84283 -9.48833 -9.11115 -8.51131 -6.24229 0.46437 0.54235 1.32263 1.35478 1.51960 1.74302 2.08496 2.27234 2.73829 2.96906 3.00459 3.12479 3.36687 3.76619 3.82585 3.84990 4.01073 4.02561 4.13837 4.16402 4.42175 4.44647 4.46231 4.54059 4.67944 4.70874 4.80065 4.85120 4.86923 4.95158 4.97561 5.02137 5.08326 5.21897 5.22895 5.30092 5.33083 5.44986 5.46491 5.51461 5.53554 5.61374 5.70706 5.78443 5.87799 6.01696 6.18908 6.82940 7.08333 7.55760 7.58060 8.60078 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026894 B = 0.001891 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.876887 B =14799.658421 C =14881.660267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.139 4.139 5 H 0.115 0.885 6 C -0.181 4.181 7 C 0.085 3.915 8 H 0.115 0.885 9 N -0.706 5.706 10 C 0.703 3.297 11 O -0.635 6.635 12 N -0.730 5.730 13 C 0.202 3.798 14 C -0.172 4.172 15 C -0.049 4.049 16 C -0.239 4.239 17 C 0.129 3.871 18 O -0.242 6.242 19 C -0.400 4.400 20 H 0.083 0.917 21 C 0.010 3.990 22 N -0.921 5.921 23 Si 0.971 3.029 24 H -0.267 1.267 25 H -0.268 1.268 26 H -0.261 1.261 27 C -0.192 4.192 28 C -0.044 4.044 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.411 0.589 39 H 0.408 0.592 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.133 0.867 43 H 0.109 0.891 44 H 0.285 0.715 45 H 0.132 0.868 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.873 19.014 -22.290 29.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 C -0.199 4.199 4 C -0.159 4.159 5 H 0.133 0.867 6 C -0.219 4.219 7 C -0.022 4.022 8 H 0.133 0.867 9 N -0.360 5.360 10 C 0.404 3.596 11 O -0.517 6.517 12 N -0.385 5.385 13 C 0.079 3.921 14 C -0.174 4.174 15 C -0.068 4.068 16 C -0.258 4.258 17 C 0.080 3.920 18 O -0.149 6.149 19 C -0.476 4.476 20 H 0.100 0.900 21 C -0.189 4.189 22 N -0.561 5.561 23 Si 0.793 3.207 24 H -0.192 1.192 25 H -0.193 1.193 26 H -0.185 1.185 27 C -0.211 4.211 28 C -0.062 4.062 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.247 0.753 39 H 0.244 0.756 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.151 0.849 43 H 0.127 0.873 44 H 0.094 0.906 45 H 0.149 0.851 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.302 18.448 -22.766 29.331 hybrid contribution 0.388 -0.170 1.586 1.642 sum 1.691 18.278 -21.180 28.028 Atomic orbital electron populations 1.21810 0.95300 1.01261 1.01941 1.20724 0.95363 0.96614 0.95680 1.21780 1.01301 0.94662 1.02111 1.22964 1.02135 0.90129 1.00664 0.86741 1.23695 0.92450 1.01982 1.03818 1.21473 0.98953 0.97510 0.84276 0.86678 1.44345 1.50370 1.32586 1.08688 1.16041 0.79652 0.80601 0.83355 1.90883 1.56543 1.61020 1.43263 1.45205 1.52064 1.35024 1.06210 1.19739 0.94135 0.87802 0.90458 1.19529 0.99655 1.03118 0.95060 1.20918 0.97445 0.95747 0.92664 1.21269 1.02426 1.06401 0.95691 1.19742 0.94574 0.94658 0.83064 1.83523 1.57700 1.53930 1.19739 1.20708 1.13984 1.16473 0.96438 0.89976 1.25294 0.99637 0.96170 0.97755 1.69729 1.38824 1.30804 1.16786 0.85214 0.78430 0.79674 0.77390 1.19201 1.19324 1.18492 1.20518 1.01294 1.03280 0.95978 1.20949 0.96936 0.97035 0.91288 0.92867 0.91930 0.93880 0.90810 0.92115 0.92582 0.92127 0.87765 0.87404 0.75304 0.75624 0.91716 0.90798 0.84903 0.87275 0.90552 0.85051 0.82863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.03 71.98 0.65 -1.17 16 2 C -0.07 -0.69 3.07 -10.79 -0.03 -0.72 16 3 C -0.14 -1.18 9.18 71.98 0.66 -0.52 16 4 C -0.14 -1.57 5.07 -10.80 -0.05 -1.63 16 5 H 0.11 1.12 8.11 -2.39 -0.02 1.10 16 6 C -0.18 -2.11 10.10 30.59 0.31 -1.80 16 7 C 0.08 1.39 5.63 44.99 0.25 1.64 16 8 H 0.12 2.45 6.86 -2.39 -0.02 2.43 16 9 N -0.71 -12.13 5.57 -457.83 -2.55 -14.68 16 10 C 0.70 16.99 8.57 179.06 1.53 18.52 16 11 O -0.64 -20.80 15.91 -3.99 -0.06 -20.87 16 12 N -0.73 -15.32 5.55 -482.29 -2.68 -17.99 16 13 C 0.20 4.79 5.79 85.63 0.50 5.28 16 14 C -0.17 -4.68 5.25 -19.83 -0.10 -4.78 16 15 C -0.05 -1.57 9.69 22.25 0.22 -1.35 16 16 C -0.24 -9.86 9.17 22.39 0.21 -9.66 16 17 C 0.13 5.70 6.65 22.58 0.15 5.85 16 18 O -0.24 -12.64 8.59 -22.77 -0.20 -12.84 16 19 C -0.40 -22.92 9.95 67.92 0.68 -22.24 16 20 H 0.08 4.93 5.44 -2.91 -0.02 4.92 16 21 C 0.01 0.58 5.49 84.83 0.47 1.04 16 22 N -0.92 -54.08 13.96 21.61 0.30 -53.78 16 23 Si 0.97 44.35 28.62 68.60 1.96 46.32 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 27 C -0.19 -6.70 9.99 22.39 0.22 -6.48 16 28 C -0.04 -1.20 9.69 22.25 0.22 -0.98 16 29 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.04 0.67 7.29 -2.39 -0.02 0.65 16 32 H 0.07 0.77 7.90 -2.39 -0.02 0.75 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 35 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.11 1.13 8.05 -2.39 -0.02 1.11 16 38 H 0.41 4.74 8.84 -92.71 -0.82 3.92 16 39 H 0.41 7.00 8.48 -92.71 -0.79 6.22 16 40 H 0.06 1.63 8.09 -2.38 -0.02 1.61 16 41 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 42 H 0.13 3.66 8.06 -2.92 -0.02 3.64 16 43 H 0.11 5.04 5.64 -2.91 -0.02 5.02 16 44 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 45 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 46 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -69.15 385.97 2.04 -67.12 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -0.60 Total: 25.73 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 5.86 Total: -19.00 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -4.93 Total: -86.45 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.26 Total: -33.71 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.96 Total: 46.32 kcal Total: -69.15 2.04 -67.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838228395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.130 kcal (2) G-P(sol) polarization free energy of solvation -69.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds