Wall clock time and date at job start Tue Mar 31 2020 13:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35626 * 120.00023 * 2 1 4 4 C 1.41549 * 119.99939 * 354.61321 * 3 2 1 5 5 O 1.21777 * 120.00241 * 5.36443 * 4 3 2 6 6 N 1.34776 * 120.00044 * 185.37043 * 4 3 2 7 7 C 1.46507 * 120.00062 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47045 * 180.02562 * 7 6 4 9 9 H 1.08992 * 109.52604 * 54.91768 * 8 7 6 10 10 C 1.53047 * 109.49480 * 175.00290 * 8 7 6 11 11 C 1.53040 * 109.52393 * 181.30817 * 10 8 7 12 12 C 1.53193 * 109.31396 * 298.64138 * 11 10 8 13 13 N 1.46922 * 108.77602 * 54.63346 * 12 11 10 14 14 C 1.36936 * 120.62845 * 126.41234 * 13 12 11 15 15 H 1.08003 * 120.00160 * 211.29439 * 14 13 12 16 16 C 1.38812 * 120.00046 * 31.29946 * 14 13 12 17 17 N 1.31626 * 120.00075 * 10.77009 * 16 14 13 18 18 Si 1.86805 * 120.00213 * 190.76573 * 16 14 13 19 19 H 1.48502 * 109.46709 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46772 * 119.99999 * 18 16 14 21 21 H 1.48498 * 109.46846 * 240.00081 * 18 16 14 22 22 C 1.46925 * 118.74422 * 306.39579 * 13 12 11 23 23 C 1.41608 * 120.00261 * 180.02562 * 2 1 3 24 24 C 1.37958 * 126.09909 * 294.99100 * 23 2 1 25 25 C 1.40311 * 106.52801 * 179.97438 * 24 23 2 26 26 C 1.35163 * 107.20663 * 0.02562 * 25 24 23 27 27 O 1.34021 * 109.03151 * 359.77172 * 26 25 24 28 28 H 1.08988 * 109.47611 * 64.19774 * 1 2 3 29 29 H 1.09004 * 109.47003 * 184.19892 * 1 2 3 30 30 H 1.08998 * 109.46830 * 304.19040 * 1 2 3 31 31 H 1.08002 * 120.00512 * 174.60961 * 3 2 1 32 32 H 0.96998 * 120.00397 * 359.97438 * 6 4 3 33 33 H 1.08998 * 109.46730 * 60.00020 * 7 6 4 34 34 H 1.08995 * 109.46788 * 300.00477 * 7 6 4 35 35 H 1.08994 * 109.46146 * 61.29353 * 10 8 7 36 36 H 1.08997 * 109.45642 * 301.32374 * 10 8 7 37 37 H 1.08997 * 109.49676 * 58.59118 * 11 10 8 38 38 H 1.08997 * 109.49599 * 178.68838 * 11 10 8 39 39 H 1.08996 * 109.58761 * 174.42299 * 12 11 10 40 40 H 1.08999 * 109.58285 * 294.70663 * 12 11 10 41 41 H 0.96996 * 120.00138 * 179.97438 * 17 16 14 42 42 H 1.08997 * 109.59294 * 173.39318 * 22 13 12 43 43 H 1.09006 * 109.58482 * 293.67789 * 22 13 12 44 44 H 1.07999 * 126.73578 * 359.97438 * 24 23 2 45 45 H 1.08002 * 126.39812 * 179.97438 * 25 24 23 46 46 H 1.07994 * 125.48193 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.1745 0.0000 4 6 1.4820 2.3977 -0.1151 5 8 0.2642 2.4023 -0.1157 6 7 2.1603 3.5572 -0.2241 7 6 1.4326 4.8231 -0.3438 8 6 2.4313 5.9771 -0.4527 9 1 3.1164 5.7891 -1.2793 10 6 1.6759 7.2845 -0.7026 11 6 2.6761 8.4341 -0.8442 12 6 3.4721 8.5763 0.4570 13 7 4.0840 7.2805 0.7810 14 6 5.4302 7.1831 1.0122 15 1 5.9580 6.2765 0.7555 16 6 6.1165 8.2496 1.5765 17 7 5.4514 9.2662 2.0831 18 14 7.9841 8.2420 1.6172 19 1 8.4878 6.9949 0.9878 20 1 8.5002 9.4167 0.8696 21 1 8.4487 8.3087 3.0261 22 6 3.2243 6.0913 0.8527 23 6 2.2150 -1.2263 -0.0005 24 6 2.2137 -2.1662 1.0094 25 6 3.0462 -3.2119 0.5826 26 6 3.5126 -2.8776 -0.6411 27 8 3.0078 -1.6864 -0.9908 28 1 -0.3634 0.4472 -0.9251 29 1 -0.3633 -1.0250 0.0752 30 1 -0.3633 0.5775 0.8501 31 1 3.2615 1.1767 0.0879 32 1 3.1303 3.5536 -0.2233 33 1 0.8058 4.9664 0.5364 34 1 0.8066 4.7993 -1.2357 35 1 1.0090 7.4845 0.1361 36 1 1.0913 7.1967 -1.6184 37 1 3.3589 8.2229 -1.6671 38 1 2.1389 9.3610 -1.0452 39 1 4.2520 9.3267 0.3280 40 1 2.8036 8.8788 1.2630 41 1 5.9309 10.0113 2.4777 42 1 3.8406 5.2021 0.9849 43 1 2.5368 6.1876 1.6931 44 1 1.6770 -2.1084 1.9448 45 1 3.2728 -4.1148 1.1302 46 1 4.1815 -3.4759 -1.2419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857136021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:41 Heat of formation + Delta-G solvation = -9.336192 kcal Electronic energy + Delta-G solvation = -26051.125825 eV Core-core repulsion = 22328.375347 eV Total energy + Delta-G solvation = -3722.750479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.48929 -41.11752 -39.42933 -36.73131 -35.82907 -34.67330 -33.89995 -32.29995 -32.10746 -30.01969 -29.06149 -27.25614 -26.59776 -24.33845 -23.78850 -22.61229 -22.48436 -21.68437 -20.79374 -20.16020 -18.68518 -18.24168 -17.91903 -17.09443 -16.88328 -16.54415 -16.48334 -15.91591 -15.66641 -15.45820 -15.05252 -14.84816 -14.50515 -14.35762 -14.04584 -13.91006 -13.87431 -13.69128 -13.51296 -13.48570 -13.28259 -13.01718 -12.85382 -12.78578 -12.52392 -12.25341 -11.94438 -11.81686 -11.56139 -11.29448 -11.09861 -10.95476 -10.76565 -10.56570 -10.55080 -9.93583 -9.26507 -8.62237 -7.85912 -5.37538 -0.28837 0.71079 1.46239 1.47631 1.57951 1.63929 2.03287 2.32417 2.45627 2.50347 3.29765 3.60863 3.72569 3.86285 4.00717 4.03196 4.04668 4.07442 4.18346 4.23545 4.42504 4.45884 4.58956 4.63237 4.73968 4.78455 4.81208 4.89977 4.91584 4.93405 4.97447 5.02253 5.07670 5.11767 5.18563 5.24695 5.34865 5.39696 5.42821 5.52505 5.56235 5.58741 5.67610 5.80936 6.07578 6.41732 6.56947 7.16460 7.22389 7.86266 8.39385 9.19768 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014155 B = 0.002674 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.599524 B =10468.832737 C =12034.800221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.043 3.957 3 C -0.206 4.206 4 C 0.543 3.457 5 O -0.571 6.571 6 N -0.717 5.717 7 C 0.139 3.861 8 C -0.100 4.100 9 H 0.075 0.925 10 C -0.097 4.097 11 C -0.131 4.131 12 C 0.173 3.827 13 N -0.610 5.610 14 C -0.260 4.260 15 H 0.069 0.931 16 C -0.052 4.052 17 N -0.938 5.938 18 Si 0.969 3.031 19 H -0.264 1.264 20 H -0.291 1.291 21 H -0.293 1.293 22 C 0.153 3.847 23 C -0.030 4.030 24 C -0.177 4.177 25 C -0.224 4.224 26 C -0.029 4.029 27 O -0.179 6.179 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.410 0.590 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.052 0.948 40 H -0.008 1.008 41 H 0.249 0.751 42 H 0.055 0.945 43 H 0.005 0.995 44 H 0.164 0.836 45 H 0.176 0.824 46 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.959 -22.591 -6.778 24.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.041 3.959 3 C -0.226 4.226 4 C 0.335 3.665 5 O -0.454 6.454 6 N -0.368 5.368 7 C 0.015 3.985 8 C -0.121 4.121 9 H 0.093 0.907 10 C -0.135 4.135 11 C -0.170 4.170 12 C 0.048 3.952 13 N -0.334 5.334 14 C -0.391 4.391 15 H 0.086 0.914 16 C -0.247 4.247 17 N -0.584 5.584 18 Si 0.797 3.203 19 H -0.188 1.188 20 H -0.218 1.218 21 H -0.220 1.220 22 C 0.027 3.973 23 C -0.079 4.079 24 C -0.196 4.196 25 C -0.243 4.243 26 C -0.097 4.097 27 O -0.075 6.075 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.160 0.840 32 H 0.246 0.754 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.010 0.990 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.023 0.977 44 H 0.182 0.818 45 H 0.193 0.807 46 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -7.678 -22.263 -6.968 24.559 hybrid contribution 1.608 0.537 0.671 1.824 sum -6.069 -21.725 -6.297 23.420 Atomic orbital electron populations 1.20973 0.88466 1.02250 1.03870 1.19305 0.96223 0.88622 0.91778 1.22107 1.01529 0.91721 1.07276 1.17175 0.87319 0.84858 0.77131 1.90809 1.14583 1.88088 1.51954 1.45982 1.11008 1.06136 1.73650 1.21251 0.94015 0.81534 1.01698 1.21709 0.96827 0.94350 0.99185 0.90693 1.21337 0.97030 0.93299 1.01824 1.22012 0.97988 0.98534 0.98442 1.20626 0.94456 0.88036 0.92102 1.44278 1.03961 1.04020 1.81104 1.19563 0.84722 1.01432 1.33356 0.91353 1.25940 1.02415 0.98366 0.98004 1.70164 1.35378 1.10198 1.42672 0.85184 0.80511 0.77767 0.76862 1.18766 1.21803 1.22027 1.21016 0.92375 0.89755 0.94113 1.19676 1.00342 0.97394 0.90514 1.22539 1.03074 0.93568 1.00446 1.22115 1.02398 1.02235 0.97504 1.25091 1.01125 0.85239 0.98285 1.84169 1.49668 1.32703 1.40956 0.90211 0.90971 0.90010 0.83970 0.75424 0.92366 0.90881 0.92629 0.90152 0.92928 0.91292 0.92987 0.98988 0.94184 0.92672 0.97660 0.81844 0.80660 0.74261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.10 8.31 71.23 0.59 -1.50 16 2 C 0.04 0.95 5.78 -19.64 -0.11 0.84 16 3 C -0.21 -4.73 9.46 22.48 0.21 -4.51 16 4 C 0.54 14.71 7.53 85.06 0.64 15.35 16 5 O -0.57 -18.12 12.99 -4.60 -0.06 -18.18 16 6 N -0.72 -18.48 5.32 -472.18 -2.51 -21.00 16 7 C 0.14 3.82 5.07 86.38 0.44 4.26 16 8 C -0.10 -3.13 2.37 -10.72 -0.03 -3.16 16 9 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 10 C -0.10 -2.98 5.17 30.62 0.16 -2.82 16 11 C -0.13 -4.78 6.08 30.67 0.19 -4.60 16 12 C 0.17 8.39 5.25 86.36 0.45 8.85 16 13 N -0.61 -30.28 2.99 -699.16 -2.09 -32.36 16 14 C -0.26 -14.11 9.58 84.03 0.81 -13.31 16 15 H 0.07 3.56 7.85 -2.91 -0.02 3.54 16 16 C -0.05 -2.90 5.05 84.86 0.43 -2.47 16 17 N -0.94 -55.72 11.05 21.65 0.24 -55.48 16 18 Si 0.97 44.53 29.57 68.60 2.03 46.56 16 19 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 22 C 0.15 6.11 5.60 86.35 0.48 6.59 16 23 C -0.03 -0.62 6.29 23.04 0.14 -0.47 16 24 C -0.18 -3.01 10.90 22.71 0.25 -2.77 16 25 C -0.22 -2.97 10.87 22.07 0.24 -2.73 16 26 C -0.03 -0.38 12.06 67.11 0.81 0.43 16 27 O -0.18 -3.56 10.67 -6.15 -0.07 -3.62 16 28 H 0.08 1.86 7.32 -2.39 -0.02 1.84 16 29 H 0.07 1.22 7.97 -2.38 -0.02 1.20 16 30 H 0.08 1.90 7.14 -2.39 -0.02 1.88 16 31 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 32 H 0.41 9.55 7.66 -92.71 -0.71 8.84 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 39 H 0.05 2.87 6.10 -2.39 -0.01 2.85 16 40 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.05 2.10 7.14 -2.39 -0.02 2.08 16 43 H 0.01 0.23 8.14 -2.38 -0.02 0.21 16 44 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 45 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 46 H 0.24 0.98 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -69.09 374.27 3.51 -65.58 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.26 Total: 20.52 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 5.70 Total: -2.02 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -4.36 Total: -108.84 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.13 Total: -21.80 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -69.09 3.51 -65.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857136021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.245 kcal (2) G-P(sol) polarization free energy of solvation -69.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds