Wall clock time and date at job start Tue Mar 31 2020 13:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35629 * 120.00139 * 2 1 4 4 C 1.41552 * 119.99605 * 352.83510 * 3 2 1 5 5 O 1.21778 * 120.00324 * 354.10359 * 4 3 2 6 6 N 1.34773 * 119.99710 * 174.11121 * 4 3 2 7 7 C 1.46502 * 120.00420 * 179.97438 * 6 4 3 8 8 C 1.52994 * 109.47843 * 179.97438 * 7 6 4 9 9 H 1.09009 * 109.49080 * 305.06295 * 8 7 6 10 10 C 1.53036 * 109.50155 * 184.99967 * 8 7 6 11 11 C 1.53043 * 109.53982 * 178.64739 * 10 8 7 12 12 C 1.53192 * 109.30880 * 61.36398 * 11 10 8 13 13 N 1.46918 * 108.77883 * 305.36467 * 12 11 10 14 14 C 1.36940 * 120.63421 * 233.58723 * 13 12 11 15 15 H 1.07995 * 119.99934 * 151.42198 * 14 13 12 16 16 C 1.38811 * 119.99487 * 331.42312 * 14 13 12 17 17 N 1.31620 * 120.00193 * 341.94321 * 16 14 13 18 18 Si 1.86803 * 119.99904 * 161.95218 * 16 14 13 19 19 H 1.48494 * 109.47169 * 94.98449 * 18 16 14 20 20 H 1.48507 * 109.47100 * 214.98421 * 18 16 14 21 21 H 1.48500 * 109.47026 * 334.98078 * 18 16 14 22 22 C 1.46928 * 118.74053 * 53.86019 * 13 12 11 23 23 C 1.41603 * 120.00016 * 180.02562 * 2 1 3 24 24 C 1.37948 * 126.10527 * 294.71350 * 23 2 1 25 25 C 1.40324 * 106.53200 * 179.85019 * 24 23 2 26 26 C 1.35160 * 107.20115 * 0.40897 * 25 24 23 27 27 O 1.34016 * 109.03338 * 359.74330 * 26 25 24 28 28 H 1.08993 * 109.47548 * 84.23988 * 1 2 3 29 29 H 1.09000 * 109.46868 * 204.24787 * 1 2 3 30 30 H 1.09004 * 109.46881 * 324.23654 * 1 2 3 31 31 H 1.07993 * 119.99823 * 172.82352 * 3 2 1 32 32 H 0.96998 * 120.00630 * 359.97438 * 6 4 3 33 33 H 1.09002 * 109.46685 * 59.99359 * 7 6 4 34 34 H 1.09005 * 109.46601 * 300.00166 * 7 6 4 35 35 H 1.09004 * 109.45638 * 58.62777 * 10 8 7 36 36 H 1.08995 * 109.45086 * 298.66649 * 10 8 7 37 37 H 1.08995 * 109.49845 * 301.41556 * 11 10 8 38 38 H 1.09000 * 109.52344 * 181.32999 * 11 10 8 39 39 H 1.08998 * 109.58551 * 185.57457 * 12 11 10 40 40 H 1.09007 * 109.70200 * 65.22266 * 12 11 10 41 41 H 0.97005 * 120.00199 * 180.02562 * 17 16 14 42 42 H 1.09003 * 109.58664 * 65.92661 * 22 13 12 43 43 H 1.08993 * 109.59364 * 186.35170 * 22 13 12 44 44 H 1.07995 * 126.73767 * 359.97438 * 24 23 2 45 45 H 1.07989 * 126.40365 * 180.14989 * 25 24 23 46 46 H 1.07996 * 125.48268 * 179.72012 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 1.4856 2.3956 -0.1529 5 8 0.2915 2.3876 -0.3916 6 7 2.1412 3.5672 -0.0345 7 6 1.4175 4.8310 -0.1933 8 6 2.3871 6.0004 -0.0113 9 1 2.8938 5.9067 0.9493 10 6 1.6110 7.3187 -0.0529 11 6 2.5753 8.4874 0.1627 12 6 3.6136 8.5018 -0.9635 13 7 4.2642 7.1859 -1.0238 14 6 5.6285 7.0792 -0.9736 15 1 6.0859 6.1904 -0.5648 16 6 6.4235 8.1134 -1.4482 17 7 5.9123 9.0199 -2.2540 18 14 8.2190 8.2185 -0.9434 19 1 9.0629 7.5686 -1.9781 20 1 8.6123 9.6441 -0.8076 21 1 8.4090 7.5266 0.3567 22 6 3.4236 5.9870 -1.1451 23 6 2.2150 -1.2263 -0.0005 24 6 2.2179 -2.1637 1.0115 25 6 3.0464 -3.2119 0.5825 26 6 3.5131 -2.8773 -0.6411 27 8 3.0119 -1.6840 -0.9887 28 1 -0.3634 0.1031 -1.0224 29 1 -0.3633 -0.9370 0.4221 30 1 -0.3633 0.8339 0.6006 31 1 3.2587 1.1782 0.1168 32 1 3.0923 3.5737 0.1559 33 1 0.6280 4.8941 0.5557 34 1 0.9775 4.8750 -1.1896 35 1 0.8563 7.3208 0.7336 36 1 1.1248 7.4232 -1.0228 37 1 3.0802 8.3703 1.1215 38 1 2.0188 9.4247 0.1565 39 1 4.3604 9.2698 -0.7622 40 1 3.1221 8.7103 -1.9139 41 1 6.4679 9.7424 -2.5860 42 1 2.9148 5.9935 -2.1090 43 1 4.0449 5.0952 -1.0636 44 1 1.6853 -2.1038 1.9490 45 1 3.2726 -4.1150 1.1296 46 1 4.1825 -3.4752 -1.2417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857136023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:47 Heat of formation + Delta-G solvation = 10.966131 kcal Electronic energy + Delta-G solvation = -26053.202125 eV Core-core repulsion = 22331.332021 eV Total energy + Delta-G solvation = -3721.870104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.80326 -40.04160 -37.89692 -35.63298 -34.59507 -33.22750 -33.02129 -30.67901 -30.43760 -29.20118 -28.10479 -25.46651 -25.21173 -23.40329 -22.10301 -21.96066 -21.06746 -20.64340 -19.59221 -18.95246 -17.45199 -17.08099 -16.61984 -16.31283 -15.61676 -15.38145 -14.94782 -14.81026 -14.35780 -13.89090 -13.76518 -13.44197 -13.28757 -13.24355 -13.21149 -12.82106 -12.78671 -12.61697 -12.31089 -12.18313 -12.14586 -11.88163 -11.27601 -11.04004 -10.71075 -10.49848 -10.28429 -10.24906 -10.19073 -9.95178 -9.78500 -9.68774 -9.49486 -9.41834 -8.86148 -8.53299 -8.47516 -6.67897 -5.81198 -3.23899 0.56639 1.43746 2.26450 2.80470 3.31320 3.35196 3.42841 3.44835 3.45906 4.44639 4.46972 4.62396 4.73580 4.77779 5.06252 5.16676 5.27188 5.29869 5.43435 5.45300 5.47798 5.48567 5.61219 5.64606 5.69417 5.82030 5.83669 5.95240 5.98698 6.03731 6.14675 6.23969 6.28700 6.33851 6.36850 6.54955 6.58855 6.69848 6.74705 6.77760 6.85025 6.96395 7.37575 7.61860 7.64730 7.77206 8.28354 8.42925 9.18946 9.82633 10.40135 11.27169 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.002687 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.103541 B =10418.596089 C =12048.143747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.031 3.969 3 C -0.191 4.191 4 C 0.543 3.457 5 O -0.544 6.544 6 N -0.718 5.718 7 C 0.127 3.873 8 C -0.118 4.118 9 H 0.073 0.927 10 C -0.099 4.099 11 C -0.141 4.141 12 C 0.170 3.830 13 N -0.591 5.591 14 C -0.255 4.255 15 H 0.064 0.936 16 C 0.004 3.996 17 N -0.900 5.900 18 Si 0.900 3.100 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.154 3.846 23 C 0.004 3.996 24 C -0.180 4.180 25 C -0.215 4.215 26 C -0.034 4.034 27 O -0.159 6.159 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.131 0.869 32 H 0.404 0.596 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.018 0.982 41 H 0.254 0.746 42 H 0.019 0.981 43 H 0.050 0.950 44 H 0.153 0.847 45 H 0.151 0.849 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.583 -19.412 6.647 22.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.029 3.971 3 C -0.211 4.211 4 C 0.334 3.666 5 O -0.425 6.425 6 N -0.369 5.369 7 C 0.003 3.997 8 C -0.139 4.139 9 H 0.091 0.909 10 C -0.138 4.138 11 C -0.180 4.180 12 C 0.044 3.956 13 N -0.314 5.314 14 C -0.385 4.385 15 H 0.082 0.918 16 C -0.195 4.195 17 N -0.544 5.544 18 Si 0.730 3.270 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.204 1.204 22 C 0.027 3.973 23 C -0.046 4.046 24 C -0.199 4.199 25 C -0.234 4.234 26 C -0.103 4.103 27 O -0.054 6.054 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.148 0.852 32 H 0.239 0.761 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.068 0.932 44 H 0.170 0.830 45 H 0.169 0.831 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -9.261 -19.063 6.122 22.060 hybrid contribution 1.695 -0.059 0.416 1.746 sum -7.566 -19.122 6.538 21.579 Atomic orbital electron populations 1.21143 0.88590 1.02828 1.04180 1.19163 0.96038 0.88315 0.93609 1.22138 1.01014 0.92459 1.05534 1.16914 0.87184 0.84339 0.78194 1.90802 1.14907 1.87999 1.48829 1.46039 1.13211 1.05933 1.71681 1.21456 0.94671 0.81911 1.01614 1.22032 0.96830 0.93165 1.01835 0.90876 1.21337 0.97198 0.94493 1.00727 1.22162 0.98142 0.96171 1.01572 1.20765 0.93215 0.88736 0.92893 1.44047 1.02017 1.00283 1.85011 1.19139 0.81231 1.04035 1.34086 0.91814 1.25054 0.97844 0.99548 0.97076 1.70054 1.35768 1.16201 1.32393 0.86321 0.85186 0.77058 0.78452 1.21461 1.21544 1.20401 1.20987 0.91597 0.91062 0.93652 1.19682 0.98521 0.96961 0.89438 1.22212 1.03543 0.93823 1.00368 1.21742 1.02855 1.01647 0.97120 1.24271 1.01957 0.86122 0.97966 1.84196 1.49077 1.31307 1.40825 0.89612 0.92423 0.88338 0.85156 0.76126 0.91937 0.91528 0.93440 0.92475 0.92747 0.93182 0.89865 0.96397 0.93629 0.96326 0.93157 0.82951 0.83094 0.77825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 8.43 36.00 0.30 -0.89 16 2 C 0.03 0.35 5.77 -104.27 -0.60 -0.25 16 3 C -0.19 -2.25 9.46 -39.25 -0.37 -2.62 16 4 C 0.54 7.51 7.44 -15.00 -0.11 7.40 16 5 O -0.54 -8.75 13.16 5.12 0.07 -8.68 16 6 N -0.72 -9.60 5.32 -63.24 -0.34 -9.94 16 7 C 0.13 1.84 5.07 -4.04 -0.02 1.82 16 8 C -0.12 -1.92 2.38 -90.28 -0.22 -2.13 16 9 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 10 C -0.10 -1.62 5.16 -26.69 -0.14 -1.76 16 11 C -0.14 -2.63 6.08 -26.61 -0.16 -2.80 16 12 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 13 N -0.59 -14.48 2.98 -172.06 -0.51 -14.99 16 14 C -0.26 -6.87 9.57 -15.06 -0.14 -7.02 16 15 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 16 C 0.00 0.10 4.88 -17.43 -0.09 0.02 16 17 N -0.90 -26.00 11.30 55.49 0.63 -25.37 16 18 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.15 3.09 5.63 -3.48 -0.02 3.07 16 23 C 0.00 0.04 6.34 -38.41 -0.24 -0.20 16 24 C -0.18 -1.66 10.90 -38.90 -0.42 -2.09 16 25 C -0.21 -1.70 10.87 -39.89 -0.43 -2.14 16 26 C -0.03 -0.28 12.06 29.64 0.36 0.08 16 27 O -0.16 -1.76 10.67 4.68 0.05 -1.71 16 28 H 0.09 0.97 8.03 -51.93 -0.42 0.56 16 29 H 0.06 0.50 8.06 -51.93 -0.42 0.08 16 30 H 0.10 1.17 6.17 -51.93 -0.32 0.85 16 31 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.40 4.91 7.68 -40.82 -0.31 4.59 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 2.20 6.13 -51.93 -0.32 1.88 16 40 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.97 7.16 -51.93 -0.37 0.60 16 44 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 45 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.21 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 374.63 15.07 5.65 5.65 Total: -1.00 -31.57 374.63 -9.02 -40.59 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.21 Total: 3.62 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -2.33 Total: -5.53 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.22 Total: -50.30 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.12 Total: -10.39 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.57 -9.02 -40.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857136023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.559 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds