Wall clock time and date at job start Tue Mar 31 2020 13:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35629 * 120.00139 * 2 1 4 4 C 1.41552 * 119.99605 * 352.83510 * 3 2 1 5 5 O 1.21778 * 120.00324 * 354.10359 * 4 3 2 6 6 N 1.34773 * 119.99710 * 174.11121 * 4 3 2 7 7 C 1.46502 * 120.00420 * 179.97438 * 6 4 3 8 8 C 1.52994 * 109.47843 * 179.97438 * 7 6 4 9 9 H 1.09009 * 109.49080 * 305.06295 * 8 7 6 10 10 C 1.53036 * 109.50155 * 184.99967 * 8 7 6 11 11 C 1.53043 * 109.53982 * 178.64739 * 10 8 7 12 12 C 1.53192 * 109.30880 * 61.36398 * 11 10 8 13 13 N 1.46918 * 108.77883 * 305.36467 * 12 11 10 14 14 C 1.36940 * 120.63421 * 233.58723 * 13 12 11 15 15 H 1.07995 * 119.99934 * 151.42198 * 14 13 12 16 16 C 1.38811 * 119.99487 * 331.42312 * 14 13 12 17 17 N 1.31620 * 120.00193 * 341.94321 * 16 14 13 18 18 Si 1.86803 * 119.99904 * 161.95218 * 16 14 13 19 19 H 1.48494 * 109.47169 * 94.98449 * 18 16 14 20 20 H 1.48507 * 109.47100 * 214.98421 * 18 16 14 21 21 H 1.48500 * 109.47026 * 334.98078 * 18 16 14 22 22 C 1.46928 * 118.74053 * 53.86019 * 13 12 11 23 23 C 1.41603 * 120.00016 * 180.02562 * 2 1 3 24 24 C 1.37948 * 126.10527 * 294.71350 * 23 2 1 25 25 C 1.40324 * 106.53200 * 179.85019 * 24 23 2 26 26 C 1.35160 * 107.20115 * 0.40897 * 25 24 23 27 27 O 1.34016 * 109.03338 * 359.74330 * 26 25 24 28 28 H 1.08993 * 109.47548 * 84.23988 * 1 2 3 29 29 H 1.09000 * 109.46868 * 204.24787 * 1 2 3 30 30 H 1.09004 * 109.46881 * 324.23654 * 1 2 3 31 31 H 1.07993 * 119.99823 * 172.82352 * 3 2 1 32 32 H 0.96998 * 120.00630 * 359.97438 * 6 4 3 33 33 H 1.09002 * 109.46685 * 59.99359 * 7 6 4 34 34 H 1.09005 * 109.46601 * 300.00166 * 7 6 4 35 35 H 1.09004 * 109.45638 * 58.62777 * 10 8 7 36 36 H 1.08995 * 109.45086 * 298.66649 * 10 8 7 37 37 H 1.08995 * 109.49845 * 301.41556 * 11 10 8 38 38 H 1.09000 * 109.52344 * 181.32999 * 11 10 8 39 39 H 1.08998 * 109.58551 * 185.57457 * 12 11 10 40 40 H 1.09007 * 109.70200 * 65.22266 * 12 11 10 41 41 H 0.97005 * 120.00199 * 180.02562 * 17 16 14 42 42 H 1.09003 * 109.58664 * 65.92661 * 22 13 12 43 43 H 1.08993 * 109.59364 * 186.35170 * 22 13 12 44 44 H 1.07995 * 126.73767 * 359.97438 * 24 23 2 45 45 H 1.07989 * 126.40365 * 180.14989 * 25 24 23 46 46 H 1.07996 * 125.48268 * 179.72012 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 1.4856 2.3956 -0.1529 5 8 0.2915 2.3876 -0.3916 6 7 2.1412 3.5672 -0.0345 7 6 1.4175 4.8310 -0.1933 8 6 2.3871 6.0004 -0.0113 9 1 2.8938 5.9067 0.9493 10 6 1.6110 7.3187 -0.0529 11 6 2.5753 8.4874 0.1627 12 6 3.6136 8.5018 -0.9635 13 7 4.2642 7.1859 -1.0238 14 6 5.6285 7.0792 -0.9736 15 1 6.0859 6.1904 -0.5648 16 6 6.4235 8.1134 -1.4482 17 7 5.9123 9.0199 -2.2540 18 14 8.2190 8.2185 -0.9434 19 1 9.0629 7.5686 -1.9781 20 1 8.6123 9.6441 -0.8076 21 1 8.4090 7.5266 0.3567 22 6 3.4236 5.9870 -1.1451 23 6 2.2150 -1.2263 -0.0005 24 6 2.2179 -2.1637 1.0115 25 6 3.0464 -3.2119 0.5825 26 6 3.5131 -2.8773 -0.6411 27 8 3.0119 -1.6840 -0.9887 28 1 -0.3634 0.1031 -1.0224 29 1 -0.3633 -0.9370 0.4221 30 1 -0.3633 0.8339 0.6006 31 1 3.2587 1.1782 0.1168 32 1 3.0923 3.5737 0.1559 33 1 0.6280 4.8941 0.5557 34 1 0.9775 4.8750 -1.1896 35 1 0.8563 7.3208 0.7336 36 1 1.1248 7.4232 -1.0228 37 1 3.0802 8.3703 1.1215 38 1 2.0188 9.4247 0.1565 39 1 4.3604 9.2698 -0.7622 40 1 3.1221 8.7103 -1.9139 41 1 6.4679 9.7424 -2.5860 42 1 2.9148 5.9935 -2.1090 43 1 4.0449 5.0952 -1.0636 44 1 1.6853 -2.1038 1.9490 45 1 3.2726 -4.1150 1.1296 46 1 4.1825 -3.4752 -1.2417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857136023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:46 Heat of formation + Delta-G solvation = -7.434435 kcal Electronic energy + Delta-G solvation = -26054.000033 eV Core-core repulsion = 22331.332021 eV Total energy + Delta-G solvation = -3722.668012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.49151 -41.13170 -39.42343 -36.73116 -35.83031 -34.67433 -33.89865 -32.31663 -32.10386 -30.01947 -29.05668 -27.25147 -26.60420 -24.34340 -23.78096 -22.61384 -22.49866 -21.68853 -20.79802 -20.15919 -18.68237 -18.24247 -17.92313 -17.10970 -16.85375 -16.52754 -16.50772 -15.93331 -15.69256 -15.47328 -15.04184 -14.89336 -14.50956 -14.28512 -14.10301 -13.91784 -13.87032 -13.69844 -13.58440 -13.44578 -13.28041 -12.99904 -12.88529 -12.75117 -12.49367 -12.26281 -11.98014 -11.82104 -11.57218 -11.29875 -11.08675 -10.95993 -10.77298 -10.54149 -10.51055 -9.93529 -9.26107 -8.67213 -7.87663 -5.33418 -0.30080 0.71274 1.46129 1.48032 1.57910 1.64149 2.05598 2.30765 2.46275 2.51055 3.27168 3.60411 3.72860 3.86672 4.00256 4.02558 4.04976 4.07492 4.17790 4.23763 4.41716 4.46302 4.58390 4.62394 4.73308 4.77396 4.80497 4.89630 4.90745 4.93243 4.97325 5.01338 5.08289 5.11307 5.19779 5.23922 5.34081 5.39607 5.43892 5.52020 5.56340 5.58237 5.67032 5.77752 6.08185 6.38773 6.56758 7.14710 7.22324 7.86117 8.38716 9.18670 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.002687 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.103541 B =10418.596089 C =12048.143747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.044 3.956 3 C -0.207 4.207 4 C 0.544 3.456 5 O -0.571 6.571 6 N -0.716 5.716 7 C 0.139 3.861 8 C -0.100 4.100 9 H 0.076 0.924 10 C -0.097 4.097 11 C -0.130 4.130 12 C 0.173 3.827 13 N -0.609 5.609 14 C -0.263 4.263 15 H 0.069 0.931 16 C -0.052 4.052 17 N -0.936 5.936 18 Si 0.966 3.034 19 H -0.287 1.287 20 H -0.294 1.294 21 H -0.267 1.267 22 C 0.152 3.848 23 C -0.032 4.032 24 C -0.174 4.174 25 C -0.223 4.223 26 C -0.031 4.031 27 O -0.182 6.182 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.410 0.590 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.048 0.952 40 H -0.008 1.008 41 H 0.249 0.751 42 H 0.004 0.996 43 H 0.055 0.945 44 H 0.168 0.832 45 H 0.177 0.823 46 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.663 -21.662 8.339 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.041 3.959 3 C -0.228 4.228 4 C 0.336 3.664 5 O -0.454 6.454 6 N -0.367 5.367 7 C 0.014 3.986 8 C -0.120 4.120 9 H 0.095 0.905 10 C -0.135 4.135 11 C -0.168 4.168 12 C 0.048 3.952 13 N -0.332 5.332 14 C -0.393 4.393 15 H 0.087 0.913 16 C -0.247 4.247 17 N -0.582 5.582 18 Si 0.794 3.206 19 H -0.214 1.214 20 H -0.220 1.220 21 H -0.191 1.191 22 C 0.027 3.973 23 C -0.081 4.081 24 C -0.193 4.193 25 C -0.241 4.241 26 C -0.099 4.099 27 O -0.078 6.078 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.160 0.840 32 H 0.246 0.754 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.010 0.990 41 H 0.058 0.942 42 H 0.022 0.978 43 H 0.073 0.927 44 H 0.185 0.815 45 H 0.194 0.806 46 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -9.348 -21.338 7.837 24.579 hybrid contribution 1.710 0.501 -0.147 1.788 sum -7.639 -20.837 7.690 23.487 Atomic orbital electron populations 1.21090 0.88513 1.03350 1.03467 1.19292 0.96255 0.88641 0.91666 1.22108 1.01550 0.91773 1.07322 1.17168 0.86885 0.84855 0.77495 1.90792 1.16040 1.88347 1.50240 1.45992 1.13506 1.05587 1.71627 1.21260 0.94298 0.81547 1.01461 1.21788 0.96011 0.94240 0.99988 0.90519 1.21338 0.97179 0.93077 1.01907 1.21991 0.97326 0.98465 0.99067 1.20613 0.93314 0.87716 0.93601 1.44325 1.01950 1.01712 1.85257 1.19521 0.82688 1.04014 1.33078 0.91319 1.25828 1.01846 0.99595 0.97443 1.70211 1.37090 1.16907 1.33978 0.85292 0.80372 0.76602 0.78371 1.21388 1.22025 1.19129 1.21111 0.92031 0.89617 0.94584 1.19701 1.00276 0.97561 0.90542 1.22550 1.02997 0.93452 1.00349 1.22120 1.02467 1.02232 0.97311 1.25089 1.01263 0.85140 0.98449 1.84178 1.49564 1.32651 1.41386 0.90498 0.90436 0.89554 0.83975 0.75404 0.90671 0.92549 0.90010 0.92692 0.92766 0.91192 0.93330 0.98952 0.94175 0.97764 0.92693 0.81495 0.80551 0.74465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 8.43 71.23 0.60 -1.66 16 2 C 0.04 0.97 5.77 -19.64 -0.11 0.86 16 3 C -0.21 -4.77 9.46 22.48 0.21 -4.56 16 4 C 0.54 14.74 7.44 85.06 0.63 15.37 16 5 O -0.57 -18.20 13.16 -4.60 -0.06 -18.26 16 6 N -0.72 -18.40 5.32 -472.19 -2.51 -20.92 16 7 C 0.14 3.79 5.07 86.38 0.44 4.22 16 8 C -0.10 -3.10 2.38 -10.57 -0.03 -3.12 16 9 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 10 C -0.10 -2.95 5.16 30.62 0.16 -2.80 16 11 C -0.13 -4.69 6.08 30.67 0.19 -4.50 16 12 C 0.17 8.35 5.30 86.36 0.46 8.80 16 13 N -0.61 -30.22 2.98 -698.27 -2.08 -32.30 16 14 C -0.26 -14.28 9.57 84.03 0.80 -13.47 16 15 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 16 C -0.05 -2.89 4.88 84.86 0.41 -2.47 16 17 N -0.94 -55.79 11.30 21.65 0.24 -55.55 16 18 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 19 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 C 0.15 6.10 5.63 86.51 0.49 6.58 16 23 C -0.03 -0.65 6.34 23.03 0.15 -0.51 16 24 C -0.17 -2.85 10.90 22.71 0.25 -2.61 16 25 C -0.22 -2.92 10.87 22.07 0.24 -2.68 16 26 C -0.03 -0.43 12.06 67.11 0.81 0.38 16 27 O -0.18 -3.80 10.67 -6.18 -0.07 -3.87 16 28 H 0.08 1.75 8.03 -2.39 -0.02 1.73 16 29 H 0.08 1.26 8.06 -2.39 -0.02 1.24 16 30 H 0.09 2.04 6.17 -2.38 -0.01 2.02 16 31 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.41 9.50 7.68 -92.71 -0.71 8.79 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.05 2.66 6.13 -2.39 -0.01 2.64 16 40 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 41 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 42 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.05 2.11 7.16 -2.39 -0.02 2.09 16 44 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 45 H 0.18 1.30 8.06 -2.92 -0.02 1.28 16 46 H 0.24 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -69.67 374.63 3.51 -66.16 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.26 Total: 20.30 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 5.70 Total: -2.15 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -4.35 Total: -108.77 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.13 Total: -22.12 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -69.67 3.51 -66.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857136023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.726 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds