Wall clock time and date at job start Tue Mar 31 2020 13:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35619 * 119.99933 * 2 1 4 4 C 1.41554 * 119.99936 * 180.02562 * 3 2 1 5 5 O 1.21778 * 120.00097 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00079 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00141 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47477 * 179.97438 * 7 6 4 9 9 H 1.09002 * 109.52043 * 305.07684 * 8 7 6 10 10 C 1.53032 * 109.49995 * 184.99769 * 8 7 6 11 11 C 1.53043 * 109.53877 * 178.68217 * 10 8 7 12 12 C 1.53186 * 109.31437 * 61.36566 * 11 10 8 13 13 N 1.46927 * 108.77479 * 305.36434 * 12 11 10 14 14 C 1.36936 * 120.63328 * 233.58439 * 13 12 11 15 15 H 1.08004 * 119.99687 * 151.83020 * 14 13 12 16 16 C 1.38804 * 119.99782 * 331.83092 * 14 13 12 17 17 N 1.31622 * 120.00247 * 343.08514 * 16 14 13 18 18 Si 1.86810 * 119.99877 * 163.08468 * 16 14 13 19 19 H 1.48499 * 109.47137 * 59.99982 * 18 16 14 20 20 H 1.48496 * 109.47053 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46625 * 300.00079 * 18 16 14 22 22 C 1.46933 * 118.73465 * 53.86032 * 13 12 11 23 23 C 1.41611 * 119.99809 * 180.02562 * 2 1 3 24 24 C 1.37954 * 126.09987 * 294.71106 * 23 2 1 25 25 C 1.40314 * 106.52514 * 179.85491 * 24 23 2 26 26 C 1.35157 * 107.20677 * 0.40590 * 25 24 23 27 27 O 1.34014 * 109.03507 * 359.74799 * 26 25 24 28 28 H 1.08997 * 109.47831 * 89.99704 * 1 2 3 29 29 H 1.09007 * 109.47242 * 210.00014 * 1 2 3 30 30 H 1.08994 * 109.47044 * 329.99421 * 1 2 3 31 31 H 1.07998 * 120.00553 * 0.02562 * 3 2 1 32 32 H 0.97002 * 119.99805 * 359.97438 * 6 4 3 33 33 H 1.08995 * 109.47309 * 59.99182 * 7 6 4 34 34 H 1.09002 * 109.46648 * 299.99953 * 7 6 4 35 35 H 1.09003 * 109.46153 * 58.66055 * 10 8 7 36 36 H 1.08997 * 109.44923 * 298.69567 * 10 8 7 37 37 H 1.08996 * 109.49433 * 301.41091 * 11 10 8 38 38 H 1.09007 * 109.52229 * 181.32916 * 11 10 8 39 39 H 1.09001 * 109.59236 * 185.57892 * 12 11 10 40 40 H 1.09008 * 109.70642 * 65.21545 * 12 11 10 41 41 H 0.97001 * 120.00021 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.58974 * 65.93163 * 22 13 12 43 43 H 1.09003 * 109.58500 * 186.35202 * 22 13 12 44 44 H 1.08001 * 126.73463 * 0.02562 * 24 23 2 45 45 H 1.08005 * 126.39877 * 180.17174 * 25 24 23 46 46 H 1.07996 * 125.48243 * 179.71946 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1745 0.0000 4 6 3.6006 1.1745 -0.0005 5 8 4.2095 0.1199 -0.0015 6 7 4.2745 2.3417 0.0000 7 6 5.7395 2.3417 -0.0012 8 6 6.2496 3.7842 -0.0009 9 1 5.8137 4.3247 -0.8411 10 6 7.7746 3.7867 -0.1278 11 6 8.2831 5.2299 -0.1607 12 6 7.9057 5.9300 1.1485 13 7 6.4557 5.8055 1.3504 14 6 5.6843 6.9150 1.5724 15 1 4.6453 6.9181 1.2776 16 6 6.2379 8.0356 2.1762 17 7 7.3758 7.9363 2.8301 18 14 5.3677 9.6846 2.0608 19 1 4.0191 9.5766 2.6729 20 1 6.1587 10.7132 2.7829 21 1 5.2341 10.0748 0.6342 22 6 5.8499 4.4673 1.3157 23 6 2.2150 -1.2264 -0.0005 24 6 2.2178 -2.1638 1.0116 25 6 3.0463 -3.2118 0.5827 26 6 3.5130 -2.8774 -0.6409 27 8 3.0120 -1.6841 -0.9887 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6452 2.1098 0.0004 32 1 3.7895 3.1817 0.0003 33 1 6.1022 1.8286 -0.8918 34 1 6.1035 1.8270 0.8881 35 1 8.0634 3.2789 -1.0480 36 1 8.2107 3.2675 0.7256 37 1 7.8281 5.7568 -0.9993 38 1 9.3671 5.2316 -0.2747 39 1 8.1774 6.9840 1.0909 40 1 8.4319 5.4619 1.9806 41 1 7.7625 8.7193 3.2524 42 1 6.2119 3.8803 2.1598 43 1 4.7648 4.5560 1.3683 44 1 1.6846 -2.1040 1.9489 45 1 3.2723 -4.1152 1.1298 46 1 4.1824 -3.4754 -1.2415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857136024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:50 Heat of formation + Delta-G solvation = 10.762555 kcal Electronic energy + Delta-G solvation = -26551.329541 eV Core-core repulsion = 22829.450609 eV Total energy + Delta-G solvation = -3721.878932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.39908 -39.81494 -37.84668 -35.65350 -34.62320 -32.99952 -32.80185 -30.62777 -30.43346 -28.83217 -28.47747 -25.41904 -25.17976 -22.92563 -22.08996 -21.57807 -21.12404 -20.66317 -19.40498 -18.97861 -17.69995 -16.66438 -16.59328 -15.88440 -15.66182 -15.24839 -14.84336 -14.41171 -14.23758 -13.81586 -13.74489 -13.55093 -13.38312 -13.22662 -12.85041 -12.77903 -12.67242 -12.49768 -12.31133 -12.19955 -12.16272 -12.06928 -11.27933 -11.01827 -10.71048 -10.50750 -10.25569 -10.18667 -10.01640 -9.90646 -9.82945 -9.59025 -9.53548 -9.42324 -8.83047 -8.47589 -8.08996 -6.68228 -5.80472 -3.23917 0.65650 1.87774 2.65471 3.14286 3.35993 3.42300 3.42869 3.43887 3.45060 4.46528 4.58926 4.67293 5.01349 5.05436 5.08760 5.11226 5.17967 5.25340 5.30332 5.44674 5.47653 5.51739 5.62046 5.67982 5.79642 5.84401 5.93679 5.96818 5.99086 6.05618 6.23164 6.25920 6.33805 6.37899 6.53970 6.57008 6.59415 6.71025 6.78543 6.86107 6.96954 7.18343 7.39109 7.65542 7.67342 7.76541 8.35628 8.43203 9.19225 9.82713 10.40033 11.27689 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019452 B = 0.002730 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.093336 B =10254.675200 C =11246.139518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.024 3.976 3 C -0.192 4.192 4 C 0.535 3.465 5 O -0.533 6.533 6 N -0.718 5.718 7 C 0.129 3.871 8 C -0.117 4.117 9 H 0.073 0.927 10 C -0.099 4.099 11 C -0.141 4.141 12 C 0.169 3.831 13 N -0.592 5.592 14 C -0.255 4.255 15 H 0.064 0.936 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.902 3.098 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.154 3.846 23 C 0.033 3.967 24 C -0.195 4.195 25 C -0.217 4.217 26 C -0.031 4.031 27 O -0.142 6.142 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.139 0.861 32 H 0.403 0.597 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.086 0.914 40 H 0.017 0.983 41 H 0.254 0.746 42 H 0.018 0.982 43 H 0.050 0.950 44 H 0.144 0.856 45 H 0.144 0.856 46 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.502 -17.521 -7.321 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.022 3.978 3 C -0.213 4.213 4 C 0.325 3.675 5 O -0.413 6.413 6 N -0.369 5.369 7 C 0.005 3.995 8 C -0.138 4.138 9 H 0.091 0.909 10 C -0.138 4.138 11 C -0.180 4.180 12 C 0.043 3.957 13 N -0.314 5.314 14 C -0.385 4.385 15 H 0.082 0.918 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.732 3.268 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.028 3.972 23 C -0.018 4.018 24 C -0.214 4.214 25 C -0.236 4.236 26 C -0.101 4.101 27 O -0.036 6.036 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.157 0.843 32 H 0.238 0.762 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.068 0.932 44 H 0.162 0.838 45 H 0.162 0.838 46 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.895 -17.930 -7.478 21.802 hybrid contribution -0.398 1.253 0.264 1.341 sum -10.293 -16.677 -7.215 20.884 Atomic orbital electron populations 1.20959 0.88952 1.03976 1.03412 1.19226 0.95439 0.89203 0.93959 1.22272 0.94624 0.98749 1.05656 1.17081 0.88362 0.84225 0.77878 1.90847 1.70261 1.30481 1.49685 1.45996 1.08090 1.08369 1.74458 1.21418 0.78707 0.97762 1.01595 1.22026 0.96799 0.93329 1.01655 0.90902 1.21336 0.94218 0.97858 1.00350 1.22165 0.98731 0.95379 1.01762 1.20794 0.83664 1.00527 0.90696 1.44048 1.03861 1.00657 1.82816 1.19116 0.94729 0.91557 1.33072 0.91808 1.25055 0.97921 0.99398 0.97191 1.70028 1.20425 1.28840 1.35301 0.86375 0.78895 0.83830 0.77680 1.20883 1.21629 1.21033 1.20981 0.96428 0.87408 0.92419 1.19316 0.96481 0.95735 0.90262 1.21929 1.05079 0.94356 1.00046 1.21550 1.03468 1.01500 0.97071 1.23981 1.01733 0.86272 0.98082 1.84155 1.48150 1.30540 1.40769 0.89781 0.90539 0.90095 0.84338 0.76238 0.92119 0.91708 0.93491 0.92522 0.92766 0.93204 0.89602 0.96453 0.93551 0.96366 0.93159 0.83821 0.83839 0.78721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.02 36.01 0.36 -0.43 16 2 C 0.02 0.26 5.78 -104.27 -0.60 -0.34 16 3 C -0.19 -2.18 9.49 -39.25 -0.37 -2.55 16 4 C 0.54 7.84 7.53 -15.00 -0.11 7.73 16 5 O -0.53 -9.49 12.81 -18.27 -0.23 -9.72 16 6 N -0.72 -9.94 5.32 -63.24 -0.34 -10.27 16 7 C 0.13 1.95 5.06 -4.04 -0.02 1.93 16 8 C -0.12 -1.96 2.38 -90.28 -0.22 -2.17 16 9 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 10 C -0.10 -1.66 5.16 -26.69 -0.14 -1.80 16 11 C -0.14 -2.67 6.08 -26.61 -0.16 -2.83 16 12 C 0.17 4.00 5.30 -3.71 -0.02 3.99 16 13 N -0.59 -14.54 2.99 -172.05 -0.51 -15.05 16 14 C -0.26 -6.86 9.58 -15.06 -0.14 -7.00 16 15 H 0.06 1.66 7.89 -52.48 -0.41 1.25 16 16 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 17 N -0.90 -26.02 11.20 55.49 0.62 -25.40 16 18 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.15 3.13 5.63 -3.48 -0.02 3.11 16 23 C 0.03 0.43 4.38 -38.40 -0.17 0.26 16 24 C -0.19 -2.38 10.90 -38.91 -0.42 -2.80 16 25 C -0.22 -2.49 10.87 -39.90 -0.43 -2.92 16 26 C -0.03 -0.37 12.06 29.64 0.36 -0.01 16 27 O -0.14 -2.05 8.90 -18.70 -0.17 -2.21 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 30 H 0.08 0.42 8.08 -51.93 -0.42 0.01 16 31 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.40 4.92 7.68 -40.82 -0.31 4.60 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 39 H 0.09 2.28 6.06 -51.93 -0.31 1.96 16 40 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.97 7.16 -51.93 -0.37 0.60 16 44 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 45 H 0.14 1.29 8.06 -52.48 -0.42 0.86 16 46 H 0.20 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -33.13 374.18 -9.53 -42.66 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.31 Total: 3.87 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -2.20 Total: -5.85 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.23 Total: -50.73 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.40 Total: -11.93 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.13 -9.53 -42.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857136024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.426 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds