Wall clock time and date at job start Tue Mar 31 2020 13:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46732 * 2 1 4 4 H 1.09000 * 109.48377 * 304.97916 * 3 2 1 5 5 C 1.53283 * 109.46600 * 184.99282 * 3 2 1 6 6 C 1.53183 * 109.06420 * 182.44662 * 5 3 2 7 7 H 1.08992 * 109.54406 * 176.85337 * 6 5 3 8 8 C 1.53001 * 109.53897 * 297.02913 * 6 5 3 9 9 C 1.50700 * 109.46969 * 184.82082 * 8 6 5 10 10 O 1.21272 * 120.00007 * 0.02562 * 9 8 6 11 11 N 1.34776 * 120.00024 * 179.97438 * 9 8 6 12 12 C 1.39272 * 119.99763 * 185.14879 * 11 9 8 13 13 C 1.39673 * 119.57119 * 174.69208 * 12 11 9 14 14 C 1.38661 * 119.49221 * 179.97438 * 13 12 11 15 15 C 1.38346 * 118.67060 * 0.02562 * 14 13 12 16 16 C 1.40577 * 119.12797 * 359.97438 * 15 14 13 17 17 C 1.41339 * 119.78355 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00366 * 0.02562 * 17 16 15 19 19 C 1.40028 * 119.99880 * 180.27438 * 17 16 15 20 20 N 1.30740 * 119.99868 * 359.72690 * 19 17 16 21 21 Si 1.86795 * 120.00056 * 179.72587 * 19 17 16 22 22 H 1.48507 * 109.47294 * 89.99945 * 21 19 17 23 23 H 1.48497 * 109.47465 * 209.99822 * 21 19 17 24 24 H 1.48500 * 109.47440 * 330.00173 * 21 19 17 25 25 N 1.31903 * 119.57828 * 354.95187 * 12 11 9 26 26 C 1.53176 * 109.10916 * 56.93540 * 6 5 3 27 27 C 1.53089 * 109.16800 * 302.97955 * 26 6 5 28 28 O 1.42897 * 109.47834 * 65.00383 * 3 2 1 29 29 H 1.09000 * 109.47130 * 299.99337 * 1 2 3 30 30 H 1.08995 * 109.47156 * 60.00106 * 1 2 3 31 31 H 1.09007 * 109.46330 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47130 * 240.00662 * 2 1 3 33 33 H 1.08995 * 109.47569 * 120.00240 * 2 1 3 34 34 H 1.08993 * 109.64429 * 62.52823 * 5 3 2 35 35 H 1.09007 * 109.50222 * 302.27742 * 5 3 2 36 36 H 1.08994 * 109.47413 * 64.82428 * 8 6 5 37 37 H 1.08997 * 109.47236 * 304.82137 * 8 6 5 38 38 H 0.96992 * 120.00242 * 5.15215 * 11 9 8 39 39 H 1.07999 * 120.25660 * 0.02562 * 13 12 11 40 40 H 1.07997 * 120.66063 * 179.97438 * 14 13 12 41 41 H 1.08000 * 120.42981 * 179.97438 * 15 14 13 42 42 H 0.97004 * 120.00385 * 179.97438 * 20 19 17 43 43 H 1.09009 * 109.51883 * 62.88675 * 26 6 5 44 44 H 1.09001 * 109.51931 * 183.06817 * 26 6 5 45 45 H 1.08994 * 109.48220 * 177.58672 * 27 26 6 46 46 H 1.08996 * 109.47813 * 297.61416 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6057 1.9817 -0.8420 5 6 3.5676 1.4444 -0.1258 6 6 4.0731 2.8890 -0.0633 7 1 5.1625 2.8959 -0.0959 8 6 3.5205 3.6764 -1.2531 9 6 4.1118 5.0625 -1.2564 10 8 4.8982 5.3883 -0.3926 11 7 3.7676 5.9397 -2.2200 12 6 4.3933 7.1823 -2.2862 13 6 4.1113 8.0400 -3.3519 14 6 4.7347 9.2769 -3.4159 15 6 5.6238 9.6248 -2.4147 16 6 5.8654 8.7174 -1.3685 17 6 6.7714 9.0583 -0.3387 18 1 7.2752 10.0134 -0.3569 19 6 7.0197 8.1555 0.7026 20 7 6.4095 6.9995 0.7249 21 14 8.2230 8.6029 2.0595 22 1 7.4968 9.2875 3.1592 23 1 8.8617 7.3682 2.5817 24 1 9.2670 9.5088 1.5167 25 7 5.2484 7.5317 -1.3447 26 6 3.5953 3.5314 1.2426 27 6 2.0683 3.4485 1.3144 28 8 1.6620 2.0815 1.2210 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0278 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8574 0.9979 -1.0769 35 1 4.0009 0.8711 0.6939 36 1 2.4357 3.7445 -1.1715 37 1 3.7838 3.1668 -2.1799 38 1 3.0842 5.7058 -2.8672 39 1 3.4124 7.7426 -4.1196 40 1 4.5309 9.9548 -4.2316 41 1 6.1256 10.5809 -2.4366 42 1 6.5818 6.3739 1.4460 43 1 4.0292 3.0003 2.0898 44 1 3.9050 4.5762 1.2692 45 1 1.7257 3.8656 2.2612 46 1 1.6345 4.0139 0.4897 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:24 Heat of formation + Delta-G solvation = -43.594865 kcal Electronic energy + Delta-G solvation = -27500.991839 eV Core-core repulsion = 23776.755793 eV Total energy + Delta-G solvation = -3724.236046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.16774 -38.93831 -37.44311 -34.58234 -33.99453 -33.87504 -32.98725 -30.33132 -29.79118 -29.52078 -27.90562 -25.54884 -24.75274 -23.51684 -22.10059 -21.42499 -21.22580 -19.66097 -18.60765 -17.62158 -16.41176 -16.31434 -16.09935 -15.85707 -15.16306 -14.73487 -14.48022 -14.41235 -13.99817 -13.76906 -13.72834 -13.52734 -13.33758 -12.92168 -12.88501 -12.50094 -12.04512 -11.96580 -11.68442 -11.66283 -11.30363 -11.18085 -11.15052 -11.05152 -10.94951 -10.90924 -10.65613 -10.47736 -10.37290 -10.06938 -9.93851 -9.62143 -9.21900 -9.01591 -8.83382 -7.96750 -7.20218 -6.95911 -6.14677 -4.40322 2.77574 3.06832 3.16925 3.19032 3.26250 3.74090 3.82296 3.86597 4.05804 4.58684 4.80755 4.90467 4.92726 5.00301 5.06839 5.13576 5.26268 5.33624 5.38572 5.51234 5.57912 5.66375 5.69567 5.74636 5.78525 5.85713 5.93881 6.00874 6.03978 6.11515 6.13988 6.22360 6.37182 6.44833 6.49052 6.61753 6.71105 6.83915 6.85024 7.23804 7.33022 7.55443 7.63013 7.80980 8.07341 8.20309 8.47652 8.74308 9.04870 9.29399 10.24249 10.47317 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.003832 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.166949 B = 7305.606379 C = 8711.512841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.088 3.912 4 H 0.057 0.943 5 C -0.145 4.145 6 C -0.069 4.069 7 H 0.084 0.916 8 C -0.141 4.141 9 C 0.468 3.532 10 O -0.405 6.405 11 N -0.669 5.669 12 C 0.372 3.628 13 C -0.358 4.358 14 C -0.037 4.037 15 C -0.306 4.306 16 C 0.271 3.729 17 C -0.425 4.425 18 H 0.082 0.918 19 C 0.059 3.941 20 N -0.655 5.655 21 Si 0.895 3.105 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.264 1.264 25 N -0.473 5.473 26 C -0.155 4.155 27 C 0.061 3.939 28 O -0.381 6.381 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.271 0.729 43 H 0.064 0.936 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.636 -12.767 -1.424 15.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.031 3.969 4 H 0.075 0.925 5 C -0.182 4.182 6 C -0.088 4.088 7 H 0.102 0.898 8 C -0.182 4.182 9 C 0.250 3.750 10 O -0.268 6.268 11 N -0.316 5.316 12 C 0.133 3.867 13 C -0.384 4.384 14 C -0.061 4.061 15 C -0.329 4.329 16 C 0.145 3.855 17 C -0.456 4.456 18 H 0.100 0.900 19 C -0.170 4.170 20 N -0.273 5.273 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.188 1.188 25 N -0.192 5.192 26 C -0.193 4.193 27 C -0.016 4.016 28 O -0.301 6.301 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.230 0.770 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.121 0.879 45 H 0.108 0.892 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.947 -13.472 0.251 15.643 hybrid contribution 0.089 0.844 -0.871 1.216 sum -7.858 -12.627 -0.621 14.886 Atomic orbital electron populations 1.21720 0.95455 1.01242 1.02290 1.21553 0.96536 0.94812 1.02485 1.22169 0.93725 0.93583 0.87446 0.92514 1.22301 0.96141 0.97286 1.02516 1.20866 1.01363 0.92711 0.93867 0.89803 1.21880 1.01421 0.94739 1.00136 1.20750 0.84591 0.86279 0.83381 1.91104 1.28179 1.75933 1.31624 1.43502 1.40856 1.14798 1.32473 1.18647 0.92065 0.84505 0.91465 1.20510 1.14853 0.99211 1.03851 1.20565 0.94674 0.94500 0.96378 1.21624 1.08477 1.02161 1.00654 1.18393 0.90055 0.86263 0.90740 1.19570 1.19847 1.01976 1.04163 0.90035 1.26158 0.96754 0.95113 0.99017 1.70323 1.27969 1.03297 1.25733 0.86536 0.81169 0.78899 0.81471 1.19670 1.20324 1.18813 1.68707 1.09962 1.17632 1.22865 1.22316 0.95347 1.04544 0.97072 1.22627 0.94956 0.82284 1.01694 1.87877 1.78687 1.25170 1.38356 0.91932 0.93006 0.93027 0.90864 0.91280 0.91153 0.91011 0.90012 0.89816 0.76968 0.89192 0.88693 0.88623 0.91680 0.91696 0.87850 0.89232 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.81 37.16 0.36 -0.92 16 2 C -0.12 -1.05 5.64 -26.73 -0.15 -1.20 16 3 C 0.09 0.96 2.37 -26.58 -0.06 0.89 16 4 H 0.06 0.59 6.71 -51.93 -0.35 0.25 16 5 C -0.14 -1.59 4.94 -26.49 -0.13 -1.72 16 6 C -0.07 -0.94 2.33 -90.43 -0.21 -1.16 16 7 H 0.08 1.31 7.96 -51.93 -0.41 0.89 16 8 C -0.14 -1.90 4.61 -27.88 -0.13 -2.03 16 9 C 0.47 8.90 7.49 -10.99 -0.08 8.82 16 10 O -0.40 -9.47 9.77 5.56 0.05 -9.42 16 11 N -0.67 -12.85 5.38 -11.40 -0.06 -12.91 16 12 C 0.37 8.97 7.43 -154.98 -1.15 7.82 16 13 C -0.36 -8.04 9.96 -38.89 -0.39 -8.43 16 14 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 15 C -0.31 -7.73 9.83 -38.66 -0.38 -8.11 16 16 C 0.27 7.58 6.55 -85.00 -0.56 7.02 16 17 C -0.42 -11.63 9.14 -37.73 -0.34 -11.98 16 18 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 19 C 0.06 1.53 5.50 -17.35 -0.10 1.43 16 20 N -0.65 -17.68 8.99 55.55 0.50 -17.18 16 21 Si 0.89 19.14 29.56 -169.99 -5.02 14.11 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 25 N -0.47 -13.09 5.74 -10.26 -0.06 -13.15 16 26 C -0.16 -2.29 5.40 -26.59 -0.14 -2.44 16 27 C 0.06 0.80 6.57 37.20 0.24 1.05 16 28 O -0.38 -4.96 9.94 -35.23 -0.35 -5.31 16 29 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.98 5.03 -51.93 -0.26 0.72 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.40 5.89 8.70 -40.82 -0.36 5.53 16 39 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 42 H 0.27 6.87 8.29 -40.82 -0.34 6.53 16 43 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 44 H 0.10 1.89 5.94 -51.93 -0.31 1.58 16 45 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.05 0.63 6.49 -51.93 -0.34 0.29 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -31.51 360.65 -10.17 -41.68 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -7.05 Total: 8.93 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -3.62 Total: -12.19 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.38 Total: -43.24 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.30 Total: -14.73 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.51 -10.17 -41.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.914 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds