Wall clock time and date at job start Tue Mar 31 2020 12:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46848 * 2 1 4 4 C 1.53004 * 109.46848 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.49457 * 305.03437 * 4 3 2 6 6 C 1.53096 * 109.47948 * 185.00198 * 4 3 2 7 7 C 1.53177 * 109.16242 * 182.41156 * 6 4 3 8 8 H 1.09005 * 109.54260 * 176.93790 * 7 6 4 9 9 C 1.50693 * 109.54145 * 297.11547 * 7 6 4 10 10 O 1.21271 * 120.00326 * 359.97438 * 9 7 6 11 11 N 1.34783 * 120.00060 * 180.02562 * 9 7 6 12 12 C 1.39262 * 120.00267 * 174.86216 * 11 9 7 13 13 C 1.39676 * 119.57381 * 185.35203 * 12 11 9 14 14 C 1.38654 * 119.49405 * 180.02562 * 13 12 11 15 15 C 1.38350 * 118.67120 * 359.97438 * 14 13 12 16 16 C 1.40580 * 119.12780 * 0.02562 * 15 14 13 17 17 C 1.41342 * 119.78471 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99891 * 359.97438 * 17 16 15 19 19 C 1.40027 * 119.99569 * 179.97438 * 17 16 15 20 20 N 1.30738 * 120.00315 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99748 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46962 * 90.00082 * 21 19 17 23 23 H 1.48500 * 109.47251 * 210.00098 * 21 19 17 24 24 H 1.48502 * 109.47217 * 329.99963 * 21 19 17 25 25 N 1.31904 * 119.57394 * 5.07775 * 12 11 9 26 26 C 1.53183 * 109.03778 * 56.98013 * 7 6 4 27 27 C 1.53094 * 109.16290 * 303.02256 * 26 7 6 28 28 O 1.42897 * 109.41611 * 57.60450 * 27 26 7 29 29 H 1.09001 * 109.46819 * 299.99442 * 1 2 3 30 30 H 1.08999 * 109.47300 * 59.99726 * 1 2 3 31 31 H 1.09001 * 109.46628 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46819 * 240.00557 * 2 1 3 33 33 H 1.08999 * 109.47300 * 120.00274 * 2 1 3 34 34 H 1.09001 * 109.46955 * 60.00641 * 3 2 1 35 35 H 1.08999 * 109.47393 * 300.00217 * 3 2 1 36 36 H 1.09001 * 109.52309 * 62.50351 * 6 4 3 37 37 H 1.09001 * 109.52151 * 302.31694 * 6 4 3 38 38 H 0.97004 * 119.99770 * 354.86191 * 11 9 7 39 39 H 1.07992 * 120.25249 * 0.02562 * 13 12 11 40 40 H 1.08000 * 120.66672 * 180.02562 * 14 13 12 41 41 H 1.08000 * 120.43771 * 180.02562 * 15 14 13 42 42 H 0.97001 * 120.00226 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.52005 * 62.92380 * 26 7 6 44 44 H 1.08991 * 109.52013 * 183.11247 * 26 7 6 45 45 H 1.08997 * 109.47869 * 177.59006 * 27 26 7 46 46 H 1.09002 * 109.47672 * 297.62397 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9334 0.8528 0.8422 6 6 4.0805 2.8803 0.1265 7 6 5.6110 2.8776 0.0658 8 1 5.9791 3.9031 0.1002 9 6 6.1606 2.1052 1.2372 10 8 5.4041 1.6056 2.0427 11 7 7.4929 1.9703 1.3902 12 6 8.0040 1.3497 2.5273 13 6 9.3853 1.3142 2.7313 14 6 9.8923 0.6954 3.8638 15 6 9.0070 0.1287 4.7633 16 6 7.6275 0.1975 4.5013 17 6 6.7107 -0.3773 5.4106 18 1 7.0706 -0.8676 6.3029 19 6 5.3357 -0.3108 5.1544 20 7 4.8999 0.2824 4.0738 21 14 4.1239 -1.0710 6.3557 22 1 3.7318 -0.0597 7.3698 23 1 2.9176 -1.5276 5.6198 24 1 4.7591 -2.2303 7.0325 25 7 7.1770 0.8078 3.4005 26 6 6.0581 2.2142 -1.2406 27 6 5.4712 0.8022 -1.3136 28 8 4.0471 0.8743 -1.2207 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 3.7544 3.3007 1.0778 37 1 3.6845 3.4805 -0.6928 38 1 8.0958 2.3056 0.7082 39 1 10.0532 1.7652 2.0126 40 1 10.9571 0.6572 4.0407 41 1 9.3708 -0.3601 5.6550 42 1 3.9474 0.3288 3.8965 43 1 5.7021 2.8009 -2.0874 44 1 7.1463 2.1583 -1.2668 45 1 5.7508 0.3409 -2.2608 46 1 5.8594 0.2041 -0.4892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:50 Heat of formation + Delta-G solvation = -44.951809 kcal Electronic energy + Delta-G solvation = -28150.990224 eV Core-core repulsion = 24426.695336 eV Total energy + Delta-G solvation = -3724.294888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.27819 -38.54542 -37.17134 -34.85753 -34.15666 -33.34451 -32.99483 -31.00954 -30.31241 -29.01886 -27.14800 -25.66948 -24.60511 -22.81033 -22.21218 -21.38306 -20.77897 -20.47595 -18.77114 -17.60723 -16.27941 -16.20168 -15.92181 -15.88838 -14.80623 -14.71698 -14.47443 -14.40597 -14.12616 -13.73135 -13.71126 -13.37929 -12.93399 -12.80896 -12.64815 -12.44244 -12.13782 -11.98212 -11.71995 -11.59098 -11.38229 -11.19850 -11.13033 -10.96356 -10.75018 -10.66572 -10.48690 -10.45754 -10.43851 -10.03891 -9.93955 -9.63821 -9.24353 -9.02865 -8.69180 -7.97614 -7.20958 -6.97291 -6.15731 -4.41066 2.75786 3.05492 3.16401 3.18449 3.25495 3.70627 3.81908 4.04967 4.05259 4.74951 4.88909 4.91478 4.98579 5.04330 5.22679 5.27266 5.33242 5.49606 5.54975 5.68400 5.70999 5.79624 5.86143 5.91902 5.96774 6.02704 6.05529 6.08542 6.12047 6.13458 6.20479 6.30388 6.40373 6.47755 6.51723 6.60896 6.70039 6.82759 6.83928 7.23150 7.54146 7.55045 7.61560 7.80069 8.05516 8.18946 8.45739 8.73082 9.03845 9.25584 10.22941 10.46244 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010401 B = 0.005884 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.484364 B = 4757.228547 C = 7004.800563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.105 4.105 4 C 0.077 3.923 5 H 0.097 0.903 6 C -0.123 4.123 7 C -0.113 4.113 8 H 0.091 0.909 9 C 0.472 3.528 10 O -0.403 6.403 11 N -0.666 5.666 12 C 0.371 3.629 13 C -0.358 4.358 14 C -0.037 4.037 15 C -0.306 4.306 16 C 0.271 3.729 17 C -0.425 4.425 18 H 0.081 0.919 19 C 0.059 3.941 20 N -0.654 5.654 21 Si 0.893 3.107 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.264 1.264 25 N -0.472 5.472 26 C -0.144 4.144 27 C 0.061 3.939 28 O -0.383 6.383 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.271 0.729 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.623 4.301 -10.861 12.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.142 4.142 4 C 0.020 3.980 5 H 0.114 0.886 6 C -0.161 4.161 7 C -0.135 4.135 8 H 0.109 0.891 9 C 0.254 3.746 10 O -0.267 6.267 11 N -0.313 5.313 12 C 0.133 3.867 13 C -0.384 4.384 14 C -0.061 4.061 15 C -0.329 4.329 16 C 0.146 3.854 17 C -0.455 4.455 18 H 0.100 0.900 19 C -0.170 4.170 20 N -0.273 5.273 21 Si 0.718 3.282 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.188 1.188 25 N -0.191 5.191 26 C -0.182 4.182 27 C -0.016 4.016 28 O -0.302 6.302 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.230 0.770 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.527 3.973 -10.661 12.649 hybrid contribution 1.180 0.120 0.443 1.266 sum -4.346 4.093 -10.218 11.834 Atomic orbital electron populations 1.21775 0.96429 1.01235 1.01331 1.21469 0.95000 0.96924 1.02641 1.21562 0.93344 0.97417 1.01907 1.22486 0.93982 0.93483 0.88034 0.88559 1.21929 0.93137 0.98403 1.02671 1.21476 0.97454 1.00335 0.94232 0.89109 1.20676 0.83034 0.83117 0.87748 1.91090 1.55300 1.40462 1.39843 1.43469 1.07408 1.59215 1.21232 1.18644 0.88551 0.91900 0.87655 1.20498 0.93307 1.20310 1.04255 1.20561 0.97185 0.94988 0.93354 1.21628 0.94934 1.13615 1.02722 1.18386 0.89392 0.88472 0.89148 1.19571 0.90450 1.30135 1.05371 0.90039 1.26148 0.99428 0.95544 0.95868 1.70318 1.14979 1.23299 1.18696 0.86554 0.80290 0.80198 0.81170 1.19687 1.20255 1.18780 1.68707 1.33157 1.13966 1.03234 1.22146 1.01020 0.98053 0.96935 1.22484 0.81796 0.95351 1.01971 1.87826 1.20231 1.82743 1.39424 0.92947 0.93124 0.93077 0.91568 0.91809 0.90806 0.92042 0.90223 0.91440 0.76966 0.89207 0.88696 0.88627 0.91706 0.90567 0.90860 0.89302 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 37.16 0.37 -1.34 16 2 C -0.12 -1.68 5.83 -26.73 -0.16 -1.83 16 3 C -0.10 -1.44 4.92 -26.73 -0.13 -1.57 16 4 C 0.08 1.22 2.35 -26.68 -0.06 1.16 16 5 H 0.10 1.91 5.80 -51.93 -0.30 1.61 16 6 C -0.12 -1.76 4.56 -26.59 -0.12 -1.89 16 7 C -0.11 -1.60 3.05 -91.59 -0.28 -1.88 16 8 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 9 C 0.47 9.04 5.78 -10.99 -0.06 8.98 16 10 O -0.40 -9.43 9.61 5.56 0.05 -9.38 16 11 N -0.67 -12.72 5.30 -11.40 -0.06 -12.78 16 12 C 0.37 8.88 7.43 -154.98 -1.15 7.73 16 13 C -0.36 -7.97 9.96 -38.89 -0.39 -8.36 16 14 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 15 C -0.31 -7.68 9.83 -38.66 -0.38 -8.06 16 16 C 0.27 7.54 6.55 -84.99 -0.56 6.98 16 17 C -0.42 -11.58 9.14 -37.73 -0.34 -11.92 16 18 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 19 C 0.06 1.54 5.50 -17.35 -0.10 1.44 16 20 N -0.65 -17.56 8.99 55.55 0.50 -17.06 16 21 Si 0.89 19.11 29.56 -169.99 -5.02 14.08 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 25 N -0.47 -12.95 5.74 -10.25 -0.06 -13.00 16 26 C -0.14 -1.72 5.57 -26.59 -0.15 -1.87 16 27 C 0.06 0.86 6.62 37.21 0.25 1.11 16 28 O -0.38 -6.00 9.94 -35.23 -0.35 -6.35 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.93 7.83 -51.93 -0.41 0.53 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 5.91 7.97 -40.82 -0.33 5.59 16 39 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 42 H 0.27 6.83 8.29 -40.82 -0.34 6.49 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.76 7.41 -51.93 -0.39 0.38 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 0.92 7.38 -51.93 -0.38 0.54 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -31.09 363.76 -10.38 -41.47 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -7.26 Total: 10.09 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -3.66 Total: -12.55 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.38 Total: -42.85 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.30 Total: -15.73 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.09 -10.38 -41.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.479 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds