Wall clock time and date at job start Tue Mar 31 2020 12:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46848 * 2 1 4 4 C 1.53004 * 109.46848 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.49457 * 305.03437 * 4 3 2 6 6 C 1.53096 * 109.47948 * 185.00198 * 4 3 2 7 7 C 1.53177 * 109.16242 * 182.41156 * 6 4 3 8 8 H 1.09005 * 109.54260 * 176.93790 * 7 6 4 9 9 C 1.50693 * 109.54145 * 297.11547 * 7 6 4 10 10 O 1.21271 * 120.00326 * 359.97438 * 9 7 6 11 11 N 1.34783 * 120.00060 * 180.02562 * 9 7 6 12 12 C 1.39262 * 120.00267 * 174.86216 * 11 9 7 13 13 C 1.39676 * 119.57381 * 185.35203 * 12 11 9 14 14 C 1.38654 * 119.49405 * 180.02562 * 13 12 11 15 15 C 1.38350 * 118.67120 * 359.97438 * 14 13 12 16 16 C 1.40580 * 119.12780 * 0.02562 * 15 14 13 17 17 C 1.41342 * 119.78471 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99891 * 359.97438 * 17 16 15 19 19 C 1.40027 * 119.99569 * 179.97438 * 17 16 15 20 20 N 1.30738 * 120.00315 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99748 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46962 * 90.00082 * 21 19 17 23 23 H 1.48500 * 109.47251 * 210.00098 * 21 19 17 24 24 H 1.48502 * 109.47217 * 329.99963 * 21 19 17 25 25 N 1.31904 * 119.57394 * 5.07775 * 12 11 9 26 26 C 1.53183 * 109.03778 * 56.98013 * 7 6 4 27 27 C 1.53094 * 109.16290 * 303.02256 * 26 7 6 28 28 O 1.42897 * 109.41611 * 57.60450 * 27 26 7 29 29 H 1.09001 * 109.46819 * 299.99442 * 1 2 3 30 30 H 1.08999 * 109.47300 * 59.99726 * 1 2 3 31 31 H 1.09001 * 109.46628 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46819 * 240.00557 * 2 1 3 33 33 H 1.08999 * 109.47300 * 120.00274 * 2 1 3 34 34 H 1.09001 * 109.46955 * 60.00641 * 3 2 1 35 35 H 1.08999 * 109.47393 * 300.00217 * 3 2 1 36 36 H 1.09001 * 109.52309 * 62.50351 * 6 4 3 37 37 H 1.09001 * 109.52151 * 302.31694 * 6 4 3 38 38 H 0.97004 * 119.99770 * 354.86191 * 11 9 7 39 39 H 1.07992 * 120.25249 * 0.02562 * 13 12 11 40 40 H 1.08000 * 120.66672 * 180.02562 * 14 13 12 41 41 H 1.08000 * 120.43771 * 180.02562 * 15 14 13 42 42 H 0.97001 * 120.00226 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.52005 * 62.92380 * 26 7 6 44 44 H 1.08991 * 109.52013 * 183.11247 * 26 7 6 45 45 H 1.08997 * 109.47869 * 177.59006 * 27 26 7 46 46 H 1.09002 * 109.47672 * 297.62397 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9334 0.8528 0.8422 6 6 4.0805 2.8803 0.1265 7 6 5.6110 2.8776 0.0658 8 1 5.9791 3.9031 0.1002 9 6 6.1606 2.1052 1.2372 10 8 5.4041 1.6056 2.0427 11 7 7.4929 1.9703 1.3902 12 6 8.0040 1.3497 2.5273 13 6 9.3853 1.3142 2.7313 14 6 9.8923 0.6954 3.8638 15 6 9.0070 0.1287 4.7633 16 6 7.6275 0.1975 4.5013 17 6 6.7107 -0.3773 5.4106 18 1 7.0706 -0.8676 6.3029 19 6 5.3357 -0.3108 5.1544 20 7 4.8999 0.2824 4.0738 21 14 4.1239 -1.0710 6.3557 22 1 3.7318 -0.0597 7.3698 23 1 2.9176 -1.5276 5.6198 24 1 4.7591 -2.2303 7.0325 25 7 7.1770 0.8078 3.4005 26 6 6.0581 2.2142 -1.2406 27 6 5.4712 0.8022 -1.3136 28 8 4.0471 0.8743 -1.2207 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 3.7544 3.3007 1.0778 37 1 3.6845 3.4805 -0.6928 38 1 8.0958 2.3056 0.7082 39 1 10.0532 1.7652 2.0126 40 1 10.9571 0.6572 4.0407 41 1 9.3708 -0.3601 5.6550 42 1 3.9474 0.3288 3.8965 43 1 5.7021 2.8009 -2.0874 44 1 7.1463 2.1583 -1.2668 45 1 5.7508 0.3409 -2.2608 46 1 5.8594 0.2041 -0.4892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:50 Heat of formation + Delta-G solvation = -62.699008 kcal Electronic energy + Delta-G solvation = -28151.759800 eV Core-core repulsion = 24426.695336 eV Total energy + Delta-G solvation = -3725.064464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.63990 -40.16205 -38.75684 -36.02402 -35.85658 -34.86240 -34.50121 -32.21107 -32.12441 -30.83570 -28.24213 -27.52445 -25.90730 -24.10718 -23.59364 -23.17518 -22.02488 -21.90703 -20.29969 -19.37836 -17.98355 -17.40337 -17.32564 -17.12513 -16.48795 -16.27513 -16.04875 -15.61642 -15.53901 -15.34246 -15.08175 -14.71095 -14.62785 -14.15483 -13.88792 -13.80002 -13.56101 -13.23047 -13.16511 -12.87926 -12.79622 -12.71524 -12.57107 -12.41511 -12.32419 -12.22900 -11.85478 -11.78576 -11.58766 -11.54414 -11.50246 -11.17371 -10.83302 -10.56597 -10.13026 -9.88673 -9.03863 -8.79272 -8.05513 -6.41776 0.92545 1.25206 1.37427 1.48528 1.50926 2.17349 2.24493 2.36096 2.89626 2.99277 3.61527 3.76220 3.85010 3.94579 4.06627 4.10208 4.15514 4.25658 4.36731 4.40046 4.48122 4.57831 4.71030 4.73421 4.75044 4.80714 4.85762 4.89733 4.91111 4.95666 4.99578 5.04223 5.06651 5.09436 5.14174 5.21669 5.26438 5.33942 5.40693 5.47996 5.68699 5.87445 5.92911 6.15681 6.35650 6.38305 6.76128 6.85831 7.09093 7.75050 8.35419 8.55664 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010401 B = 0.005884 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.484364 B = 4757.228547 C = 7004.800563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C -0.101 4.101 4 C 0.080 3.920 5 H 0.046 0.954 6 C -0.120 4.120 7 C -0.103 4.103 8 H 0.122 0.878 9 C 0.461 3.539 10 O -0.449 6.449 11 N -0.656 5.656 12 C 0.350 3.650 13 C -0.348 4.348 14 C -0.035 4.035 15 C -0.333 4.333 16 C 0.238 3.762 17 C -0.466 4.466 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.683 5.683 21 Si 0.968 3.032 22 H -0.266 1.266 23 H -0.274 1.274 24 H -0.257 1.257 25 N -0.504 5.504 26 C -0.133 4.133 27 C 0.055 3.945 28 O -0.389 6.389 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.418 0.582 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.101 0.899 42 H 0.269 0.731 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.115 0.885 46 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.238 5.898 -13.115 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.138 4.138 4 C 0.022 3.978 5 H 0.064 0.936 6 C -0.158 4.158 7 C -0.124 4.124 8 H 0.140 0.860 9 C 0.245 3.755 10 O -0.315 6.315 11 N -0.305 5.305 12 C 0.111 3.889 13 C -0.373 4.373 14 C -0.060 4.060 15 C -0.356 4.356 16 C 0.112 3.888 17 C -0.497 4.497 18 H 0.101 0.899 19 C -0.212 4.212 20 N -0.302 5.302 21 Si 0.789 3.211 22 H -0.191 1.191 23 H -0.199 1.199 24 H -0.181 1.181 25 N -0.223 5.223 26 C -0.171 4.171 27 C -0.021 4.021 28 O -0.309 6.309 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.255 0.745 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.120 0.880 42 H 0.080 0.920 43 H 0.126 0.874 44 H 0.112 0.888 45 H 0.133 0.867 46 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -5.100 5.595 -12.958 15.008 hybrid contribution 1.220 -0.358 1.037 1.640 sum -3.881 5.237 -11.921 13.587 Atomic orbital electron populations 1.21732 0.94251 1.01966 1.02250 1.21430 0.96903 0.96724 1.00854 1.21550 0.92014 0.97463 1.02772 1.22313 0.95176 0.93785 0.86499 0.93566 1.21910 0.93466 0.97411 1.02968 1.21498 0.97028 1.01103 0.92818 0.86004 1.21691 0.82577 0.82582 0.88614 1.91104 1.56289 1.42193 1.41929 1.43473 1.08162 1.58483 1.20387 1.19181 0.89499 0.91735 0.88466 1.20982 0.93213 1.18623 1.04500 1.21026 0.98897 0.93468 0.92573 1.21798 0.94582 1.15156 1.04069 1.18854 0.90878 0.89175 0.89859 1.19858 0.91669 1.32039 1.06134 0.89949 1.26940 1.00749 0.95849 0.97640 1.70503 1.14923 1.24492 1.20247 0.85430 0.77626 0.79360 0.78690 1.19066 1.19852 1.18119 1.68681 1.34837 1.14904 1.03928 1.22152 1.02245 0.96284 0.96402 1.22629 0.81111 0.96820 1.01564 1.87811 1.21217 1.83017 1.38829 0.92710 0.91441 0.92513 0.92251 0.94712 0.90876 0.89943 0.91919 0.88251 0.74487 0.85158 0.84749 0.88048 0.92040 0.87395 0.88754 0.86729 0.96988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.91 71.98 0.71 -2.46 16 2 C -0.12 -3.41 5.83 30.59 0.18 -3.23 16 3 C -0.10 -2.75 4.92 30.59 0.15 -2.60 16 4 C 0.08 2.56 2.35 30.63 0.07 2.63 16 5 H 0.05 1.99 5.80 -2.39 -0.01 1.98 16 6 C -0.12 -3.27 4.56 30.69 0.14 -3.13 16 7 C -0.10 -2.69 3.05 -11.42 -0.03 -2.72 16 8 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 9 C 0.46 17.76 5.78 87.65 0.51 18.26 16 10 O -0.45 -22.12 9.61 -3.00 -0.03 -22.15 16 11 N -0.66 -24.54 5.30 -308.37 -1.64 -26.18 16 12 C 0.35 16.81 7.43 133.25 0.99 17.80 16 13 C -0.35 -14.85 9.96 22.72 0.23 -14.62 16 14 C -0.04 -1.56 10.15 22.40 0.23 -1.33 16 15 C -0.33 -17.08 9.83 22.87 0.22 -16.85 16 16 C 0.24 13.84 6.55 40.20 0.26 14.10 16 17 C -0.47 -26.83 9.14 23.47 0.21 -26.61 16 18 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 19 C 0.01 0.77 5.50 85.29 0.47 1.24 16 20 N -0.68 -39.02 8.99 21.84 0.20 -38.82 16 21 Si 0.97 41.23 29.56 68.60 2.03 43.25 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 25 N -0.50 -28.78 5.74 -186.35 -1.07 -29.85 16 26 C -0.13 -2.74 5.57 30.69 0.17 -2.57 16 27 C 0.06 1.51 6.62 72.01 0.48 1.99 16 28 O -0.39 -11.98 9.94 -148.98 -1.48 -13.46 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.71 7.83 -2.39 -0.02 1.70 16 33 H 0.03 1.14 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 1.92 8.03 -2.39 -0.02 1.90 16 37 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.42 11.38 7.97 -92.71 -0.74 10.64 16 39 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 41 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 42 H 0.27 14.55 8.29 -92.71 -0.77 13.79 16 43 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.09 1.57 7.41 -2.39 -0.02 1.55 16 45 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.01 0.42 7.38 -2.39 -0.02 0.40 16 Total: -1.00 -73.69 363.76 3.24 -70.45 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: 0.24 Total: 36.87 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 4.99 Total: -20.11 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -2.51 Total: -94.85 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -1.51 Total: -35.61 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Total: -73.69 3.24 -70.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.755 kcal (2) G-P(sol) polarization free energy of solvation -73.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds