Wall clock time and date at job start Tue Mar 31 2020 12:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47105 * 2 1 4 4 C 1.53001 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.48572 * 54.97270 * 4 3 2 6 6 C 1.53090 * 109.48200 * 174.99981 * 4 3 2 7 7 C 1.53176 * 109.16315 * 177.59721 * 6 4 3 8 8 H 1.09004 * 109.61292 * 62.93510 * 7 6 4 9 9 C 1.50702 * 109.54138 * 183.15021 * 7 6 4 10 10 O 1.21270 * 120.00311 * 359.55949 * 9 7 6 11 11 N 1.34773 * 119.99646 * 179.56037 * 9 7 6 12 12 C 1.39275 * 119.99816 * 174.86838 * 11 9 7 13 13 C 1.39671 * 119.57308 * 185.35022 * 12 11 9 14 14 C 1.38654 * 119.49547 * 179.97438 * 13 12 11 15 15 C 1.38347 * 118.66916 * 0.02562 * 14 13 12 16 16 C 1.40576 * 119.12863 * 0.02562 * 15 14 13 17 17 C 1.41340 * 119.79031 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99493 * 359.97438 * 17 16 15 19 19 C 1.40029 * 120.00318 * 179.97438 * 17 16 15 20 20 N 1.30739 * 119.99900 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99963 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47329 * 89.99837 * 21 19 17 23 23 H 1.48498 * 109.47076 * 210.00106 * 21 19 17 24 24 H 1.48507 * 109.47070 * 329.99911 * 21 19 17 25 25 N 1.31899 * 119.57530 * 5.07690 * 12 11 9 26 26 C 1.53174 * 109.03950 * 303.02158 * 7 6 4 27 27 C 1.53086 * 109.16424 * 56.97975 * 26 7 6 28 28 O 1.42904 * 109.41545 * 302.38918 * 27 26 7 29 29 H 1.09004 * 109.46878 * 300.00392 * 1 2 3 30 30 H 1.08996 * 109.47123 * 59.99968 * 1 2 3 31 31 H 1.08993 * 109.46927 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47148 * 240.00063 * 2 1 3 33 33 H 1.08996 * 109.47123 * 120.00032 * 2 1 3 34 34 H 1.08993 * 109.47200 * 59.99769 * 3 2 1 35 35 H 1.09003 * 109.46987 * 299.99700 * 3 2 1 36 36 H 1.08996 * 109.52248 * 57.69398 * 6 4 3 37 37 H 1.08996 * 109.52001 * 297.50533 * 6 4 3 38 38 H 0.97003 * 120.00755 * 354.86128 * 11 9 7 39 39 H 1.08002 * 120.25315 * 0.02562 * 13 12 11 40 40 H 1.07997 * 120.66712 * 179.97438 * 14 13 12 41 41 H 1.08004 * 120.43877 * 179.97438 * 15 14 13 42 42 H 0.96998 * 119.99767 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.52247 * 297.07230 * 26 7 6 44 44 H 1.08996 * 109.52353 * 176.88714 * 26 7 6 45 45 H 1.08997 * 109.48307 * 62.37864 * 27 26 7 46 46 H 1.09010 * 109.48291 * 182.41260 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9333 0.8529 -0.8424 6 6 4.0806 2.8803 -0.1264 7 6 5.6111 2.8775 -0.0659 8 1 6.0098 2.3198 -0.9134 9 6 6.1200 4.2953 -0.1113 10 8 5.3374 5.2181 -0.1928 11 7 7.4448 4.5376 -0.0612 12 6 7.9210 5.8379 -0.2105 13 6 9.2978 6.0652 -0.2697 14 6 9.7701 7.3603 -0.4188 15 6 8.8553 8.3946 -0.5044 16 6 7.4822 8.1011 -0.4373 17 6 6.5355 9.1470 -0.5238 18 1 6.8679 10.1679 -0.6408 19 6 5.1666 8.8595 -0.4579 20 7 4.7642 7.6236 -0.3169 21 14 3.9154 10.2420 -0.5716 22 1 3.5478 10.4613 -1.9935 23 1 2.7022 9.8765 0.2026 24 1 4.5018 11.4874 -0.0143 25 7 7.0659 6.8381 -0.2996 26 6 6.0584 2.2140 1.2402 27 6 5.4715 0.8020 1.3132 28 8 4.0473 0.8741 1.2207 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9564 -0.8900 36 1 3.6848 3.4804 0.6929 37 1 3.7543 3.3007 -1.0777 38 1 8.0667 3.8065 0.0788 39 1 9.9893 5.2385 -0.2006 40 1 10.8308 7.5577 -0.4663 41 1 9.1917 9.4144 -0.6205 42 1 3.8160 7.4246 -0.2709 43 1 5.7026 2.8006 2.0872 44 1 7.1466 2.1580 1.2663 45 1 5.8596 0.2040 0.4887 46 1 5.7512 0.3405 2.2604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473753.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:52 Heat of formation + Delta-G solvation = -68.013878 kcal Electronic energy + Delta-G solvation = -27097.016849 eV Core-core repulsion = 23371.721915 eV Total energy + Delta-G solvation = -3725.294934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.40235 -40.24957 -39.04518 -35.98077 -35.89858 -34.87846 -34.53615 -32.23361 -32.14577 -30.89312 -28.28403 -27.54466 -26.09401 -23.89708 -23.63275 -23.05731 -21.98313 -21.58688 -20.52443 -19.54721 -18.03290 -17.77241 -17.40195 -16.77274 -16.49207 -16.27835 -15.97511 -15.67559 -15.51618 -15.34779 -15.03098 -14.89854 -14.66484 -14.28001 -13.94407 -13.69979 -13.60629 -13.54742 -13.05824 -12.89452 -12.74636 -12.58056 -12.49999 -12.32894 -12.29018 -12.25218 -11.87182 -11.78737 -11.57874 -11.48627 -11.48020 -11.18933 -10.87096 -10.71569 -10.31475 -9.90864 -9.07848 -8.82171 -8.06438 -6.43457 0.90930 1.24233 1.37691 1.49351 1.51913 2.14099 2.24596 2.31678 2.88636 2.98163 3.59508 3.66046 3.82653 3.93963 4.05253 4.12416 4.13933 4.27331 4.32300 4.35322 4.44780 4.53218 4.62303 4.70297 4.74801 4.79626 4.81473 4.83714 4.92062 4.95055 4.98451 5.05151 5.08643 5.10438 5.16265 5.27230 5.27683 5.33347 5.41176 5.51123 5.67528 5.85772 5.91708 6.14284 6.34893 6.36856 6.74324 6.84364 7.07212 7.71400 8.34255 8.55200 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.003828 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.985745 B = 7312.876835 C = 9264.039376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.113 4.113 4 C 0.101 3.899 5 H 0.076 0.924 6 C -0.123 4.123 7 C -0.094 4.094 8 H 0.118 0.882 9 C 0.465 3.535 10 O -0.460 6.460 11 N -0.654 5.654 12 C 0.348 3.652 13 C -0.346 4.346 14 C -0.035 4.035 15 C -0.331 4.331 16 C 0.235 3.765 17 C -0.466 4.466 18 H 0.085 0.915 19 C 0.012 3.988 20 N -0.690 5.690 21 Si 0.973 3.027 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.256 1.256 25 N -0.509 5.509 26 C -0.141 4.141 27 C 0.065 3.935 28 O -0.393 6.393 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.065 0.935 38 H 0.419 0.581 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.103 0.897 42 H 0.269 0.731 43 H 0.050 0.950 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 -17.910 0.680 18.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.151 4.151 4 C 0.043 3.957 5 H 0.094 0.906 6 C -0.161 4.161 7 C -0.116 4.116 8 H 0.135 0.865 9 C 0.249 3.751 10 O -0.327 6.327 11 N -0.304 5.304 12 C 0.109 3.891 13 C -0.371 4.371 14 C -0.059 4.059 15 C -0.354 4.354 16 C 0.110 3.890 17 C -0.497 4.497 18 H 0.103 0.897 19 C -0.214 4.214 20 N -0.309 5.309 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.179 1.179 25 N -0.228 5.228 26 C -0.179 4.179 27 C -0.011 4.011 28 O -0.313 6.313 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.257 0.743 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.122 0.878 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.118 0.882 45 H 0.093 0.907 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.103 -17.645 0.810 18.133 hybrid contribution 0.982 1.095 -0.154 1.479 sum -3.120 -16.549 0.656 16.854 Atomic orbital electron populations 1.21783 0.95447 1.02079 1.01708 1.21426 0.96026 0.95402 1.02411 1.21655 0.92357 0.98535 1.02533 1.22133 0.95016 0.91192 0.87361 0.90575 1.21940 0.93745 0.98053 1.02356 1.21376 0.96978 0.91726 1.01478 0.86451 1.21667 0.82629 0.92632 0.78200 1.91139 1.54696 1.45471 1.41378 1.43441 1.08418 1.06472 1.72031 1.19201 0.89729 0.86771 0.93383 1.20993 0.93192 0.98138 1.24825 1.21044 0.98905 0.92042 0.93925 1.21805 0.94316 0.98997 1.20275 1.18898 0.91269 0.90189 0.88665 1.19896 0.91451 0.94052 1.44317 0.89695 1.27022 1.01209 0.98713 0.94407 1.70525 1.16068 1.19250 1.25101 0.85350 0.77321 0.78847 0.79062 1.18997 1.19892 1.17913 1.68673 1.34594 0.98376 1.21202 1.22192 1.02708 0.97847 0.95193 1.22718 0.80062 0.94287 1.04069 1.87911 1.22147 1.82079 1.39130 0.93254 0.92595 0.91812 0.91309 0.91908 0.92534 0.90233 0.93423 0.91675 0.74315 0.84960 0.84532 0.87839 0.92011 0.93078 0.88150 0.90705 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.91 71.98 0.71 -1.64 16 2 C -0.12 -1.98 5.83 30.60 0.18 -1.80 16 3 C -0.11 -2.38 4.92 30.60 0.15 -2.23 16 4 C 0.10 2.23 2.64 30.62 0.08 2.31 16 5 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 6 C -0.12 -3.56 4.01 30.68 0.12 -3.44 16 7 C -0.09 -2.56 2.62 -11.42 -0.03 -2.59 16 8 H 0.12 2.53 8.14 -2.38 -0.02 2.51 16 9 C 0.46 18.63 7.12 87.66 0.62 19.26 16 10 O -0.46 -24.01 11.74 -3.00 -0.04 -24.04 16 11 N -0.65 -25.03 5.31 -308.37 -1.64 -26.67 16 12 C 0.35 16.99 7.43 133.25 0.99 17.98 16 13 C -0.35 -14.85 9.95 22.72 0.23 -14.62 16 14 C -0.03 -1.54 10.15 22.40 0.23 -1.31 16 15 C -0.33 -17.01 9.83 22.87 0.22 -16.78 16 16 C 0.24 13.85 6.55 40.19 0.26 14.11 16 17 C -0.47 -27.05 9.14 23.47 0.21 -26.83 16 18 H 0.08 4.62 7.85 -2.91 -0.02 4.60 16 19 C 0.01 0.66 5.50 85.29 0.47 1.13 16 20 N -0.69 -40.46 9.00 21.84 0.20 -40.27 16 21 Si 0.97 41.46 29.56 68.60 2.03 43.49 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 25 N -0.51 -29.68 5.74 -186.36 -1.07 -30.75 16 26 C -0.14 -3.07 5.29 30.68 0.16 -2.90 16 27 C 0.06 1.12 6.84 72.01 0.49 1.61 16 28 O -0.39 -8.98 9.95 -148.98 -1.48 -10.46 16 29 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.16 7.83 -2.39 -0.02 1.14 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.05 1.69 8.03 -2.39 -0.02 1.67 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.42 11.54 8.05 -92.71 -0.75 10.79 16 39 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 40 H 0.14 4.79 8.06 -2.91 -0.02 4.77 16 41 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 42 H 0.27 14.92 8.29 -92.71 -0.77 14.15 16 43 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.10 1.66 7.56 -2.39 -0.02 1.64 16 45 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -76.08 369.84 3.33 -72.75 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 0.22 Total: 33.72 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 5.11 Total: -17.77 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -2.51 Total: -97.69 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -1.52 Total: -34.50 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -76.08 3.33 -72.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473753.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.734 kcal (2) G-P(sol) polarization free energy of solvation -76.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds