Wall clock time and date at job start Tue Mar 31 2020 12:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50707 * 119.99714 * 2 1 4 4 C 1.52992 * 109.47380 * 359.97438 * 3 2 1 5 5 C 1.53001 * 109.46738 * 239.99661 * 3 2 1 6 6 C 1.53002 * 109.47099 * 120.00121 * 3 2 1 7 7 C 1.50699 * 109.46873 * 180.02562 * 6 3 2 8 8 O 1.21278 * 120.00056 * 359.97438 * 7 6 3 9 9 N 1.34774 * 119.99823 * 179.97438 * 7 6 3 10 10 C 1.39581 * 119.99990 * 179.97438 * 9 7 6 11 11 N 1.32276 * 119.72745 * 0.26696 * 10 9 7 12 12 C 1.31949 * 121.69079 * 180.30946 * 11 10 9 13 13 C 1.38093 * 120.95747 * 359.70619 * 12 11 10 14 14 C 1.38775 * 119.35013 * 359.97438 * 13 12 11 15 15 C 1.38801 * 118.45054 * 359.97438 * 14 13 12 16 16 O 1.35973 * 120.50125 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99587 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47325 * 59.99531 * 23 21 19 25 25 H 1.48496 * 109.47425 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47183 * 299.99726 * 23 21 19 27 27 H 1.08005 * 120.00116 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99477 * 180.02562 * 1 2 3 29 29 H 1.07998 * 119.99894 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47154 * 180.02562 * 4 3 2 31 31 H 1.09004 * 109.47361 * 300.00508 * 4 3 2 32 32 H 1.09002 * 109.46899 * 60.00355 * 4 3 2 33 33 H 1.09003 * 109.47447 * 299.99983 * 5 3 2 34 34 H 1.09004 * 109.47348 * 59.99884 * 5 3 2 35 35 H 1.09001 * 109.46986 * 180.02562 * 5 3 2 36 36 H 1.08995 * 109.47518 * 59.99576 * 6 3 2 37 37 H 1.09002 * 109.47042 * 299.99561 * 6 3 2 38 38 H 0.97000 * 120.00150 * 359.97438 * 9 7 6 39 39 H 1.08000 * 119.52722 * 179.72569 * 12 11 10 40 40 H 1.07997 * 120.32692 * 179.97438 * 13 12 11 41 41 H 1.08002 * 120.77560 * 180.02562 * 14 13 12 42 42 H 1.09000 * 109.47490 * 59.99648 * 17 16 15 43 43 H 1.09001 * 109.47232 * 299.99002 * 17 16 15 44 44 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 45 45 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 46 46 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 1.0693 2.4681 -0.0006 5 6 2.9431 1.3862 -1.2492 6 6 2.9431 1.3863 1.2492 7 6 3.6961 2.6917 1.2495 8 8 3.5444 3.4794 0.3399 9 7 4.5379 2.9838 2.2606 10 6 5.2357 4.1927 2.2606 11 7 5.0626 5.0499 1.2682 12 6 5.7067 6.2008 1.2261 13 6 6.5879 6.5587 2.2273 14 6 6.7960 5.6930 3.2918 15 6 6.1043 4.4898 3.3106 16 8 6.2769 3.6104 4.3332 17 6 7.1906 3.9871 5.3654 18 6 7.2519 2.8810 6.4208 19 6 8.2159 3.2779 7.5091 20 1 8.7334 4.2242 7.4533 21 6 8.4380 2.4326 8.5754 22 7 7.8081 1.2800 8.6431 23 14 9.6323 2.9248 9.9246 24 1 9.1717 4.1868 10.5572 25 1 9.6919 1.8513 10.9489 26 1 10.9825 3.1279 9.3407 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.6143 3.4120 -0.0011 31 1 0.4429 2.4101 -0.8908 32 1 0.4423 2.4105 0.8892 33 1 3.6515 0.5577 -1.2492 34 1 2.3165 1.3283 -2.1393 35 1 3.4884 2.3300 -1.2490 36 1 3.6514 0.5578 1.2493 37 1 2.3165 1.3286 2.1392 38 1 4.6589 2.3540 2.9883 39 1 5.5422 6.8728 0.3968 40 1 7.1100 7.5030 2.1824 41 1 7.4797 5.9499 4.0875 42 1 6.8526 4.9135 5.8297 43 1 8.1817 4.1360 4.9369 44 1 6.2608 2.7324 6.8493 45 1 7.5897 1.9544 5.9568 46 1 7.9641 0.6854 9.3934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888864805.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:13 Heat of formation + Delta-G solvation = -17.162740 kcal Electronic energy + Delta-G solvation = -26196.347756 eV Core-core repulsion = 22473.257893 eV Total energy + Delta-G solvation = -3723.089863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.97706 -39.78990 -37.90226 -37.18254 -34.76956 -33.48611 -31.78562 -31.37698 -30.63976 -29.38904 -27.87343 -27.33643 -25.42726 -23.81497 -22.95304 -22.34436 -21.01851 -20.17117 -18.58549 -18.07317 -17.41609 -17.21385 -16.17196 -16.01792 -15.89406 -15.38566 -15.31915 -14.89096 -14.58925 -14.54998 -14.18007 -13.94639 -13.75653 -13.38889 -12.93140 -12.77565 -12.41258 -12.20727 -12.02029 -11.94712 -11.82686 -11.58974 -11.23177 -11.10226 -11.05439 -10.98765 -10.76943 -10.70183 -10.50527 -10.05783 -9.98668 -9.76508 -9.56104 -9.42950 -9.20808 -8.92647 -8.53087 -7.65790 -6.18971 -4.24103 1.20285 1.44305 2.09312 2.71967 2.93824 3.22978 3.27704 3.28771 3.52340 4.00848 4.32617 4.34999 4.58475 4.66939 4.78751 4.94482 4.94686 5.10321 5.12656 5.17808 5.20526 5.32057 5.42397 5.45880 5.49766 5.63310 5.71653 5.84733 5.88589 5.91001 5.92398 6.01158 6.06430 6.18031 6.28518 6.34467 6.41234 6.49453 6.53963 6.63799 6.66482 7.28810 7.33614 7.51267 7.62909 7.84335 8.08195 8.13178 8.37797 8.80888 9.40874 10.92423 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013813 B = 0.002771 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.531615 B =10102.320626 C =11884.610060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C -0.019 4.019 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.130 4.130 7 C 0.505 3.495 8 O -0.472 6.472 9 N -0.653 5.653 10 C 0.328 3.672 11 N -0.443 5.443 12 C 0.074 3.926 13 C -0.161 4.161 14 C -0.149 4.149 15 C 0.066 3.934 16 O -0.316 6.316 17 C 0.066 3.934 18 C 0.027 3.973 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.424 0.576 39 H 0.156 0.844 40 H 0.134 0.866 41 H 0.144 0.856 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.783 2.404 -16.443 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.162 4.162 3 C -0.019 4.019 4 C -0.213 4.213 5 C -0.207 4.207 6 C -0.170 4.170 7 C 0.292 3.708 8 O -0.343 6.343 9 N -0.301 5.301 10 C 0.096 3.904 11 N -0.158 5.158 12 C -0.082 4.082 13 C -0.182 4.182 14 C -0.175 4.175 15 C 0.015 3.985 16 O -0.228 6.228 17 C -0.008 4.008 18 C -0.010 4.010 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.527 5.527 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.261 0.739 39 H 0.173 0.827 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.634 2.323 -17.632 20.721 hybrid contribution 1.515 0.158 2.070 2.570 sum -9.119 2.481 -15.562 18.207 Atomic orbital electron populations 1.24013 0.96183 1.02037 1.01158 1.22948 0.95933 0.97591 0.99717 1.19366 0.94890 0.93347 0.94318 1.22190 0.98564 0.99683 1.00869 1.22064 0.99201 1.03671 0.95738 1.21747 0.99389 0.95354 1.00472 1.20829 0.79361 0.88946 0.81641 1.90655 1.61078 1.49165 1.33406 1.43596 1.42542 1.17765 1.26210 1.17847 0.93350 0.88714 0.90535 1.67619 1.23293 1.02950 1.21931 1.22404 0.94195 0.93060 0.98572 1.21886 1.00584 1.00732 0.95000 1.21609 1.01538 0.93588 1.00778 1.19622 0.97149 0.91559 0.90200 1.86100 1.62914 1.42661 1.31171 1.23395 0.89654 1.01378 0.86350 1.19118 0.98381 0.92628 0.90870 1.20908 1.25378 1.04500 1.05959 0.92398 1.24977 0.96123 0.94808 0.98161 1.69952 1.41868 1.09547 1.31313 0.86541 0.81310 0.78244 0.81266 1.20064 1.21070 1.20058 0.87825 0.88764 0.87435 0.89417 0.92824 0.93200 0.93361 0.93014 0.89368 0.88458 0.88501 0.73863 0.82682 0.84857 0.83804 0.92964 0.92960 0.95355 0.95363 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.62 13.70 29.01 0.40 -1.22 16 2 C -0.14 -1.26 8.76 -36.02 -0.32 -1.57 16 3 C -0.02 -0.19 0.74 -155.66 -0.11 -0.30 16 4 C -0.16 -1.64 6.83 37.15 0.25 -1.39 16 5 C -0.15 -1.58 8.16 37.16 0.30 -1.28 16 6 C -0.13 -1.28 4.75 -27.88 -0.13 -1.42 16 7 C 0.51 6.70 7.21 -10.99 -0.08 6.62 16 8 O -0.47 -7.35 9.60 5.56 0.05 -7.29 16 9 N -0.65 -9.20 5.39 -11.29 -0.06 -9.26 16 10 C 0.33 5.30 7.45 -154.43 -1.15 4.15 16 11 N -0.44 -7.13 7.88 -12.22 -0.10 -7.23 16 12 C 0.07 0.99 11.17 -17.55 -0.20 0.79 16 13 C -0.16 -1.98 10.10 -39.44 -0.40 -2.38 16 14 C -0.15 -2.14 9.14 -39.17 -0.36 -2.50 16 15 C 0.07 1.09 6.72 -38.91 -0.26 0.83 16 16 O -0.32 -5.75 9.39 -19.66 -0.18 -5.94 16 17 C 0.07 1.29 4.70 37.16 0.17 1.47 16 18 C 0.03 0.66 5.34 -27.88 -0.15 0.52 16 19 C -0.53 -14.07 9.11 -34.44 -0.31 -14.38 16 20 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 23 Si 0.90 20.59 29.54 -169.99 -5.02 15.56 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H 0.10 0.84 5.69 -52.48 -0.30 0.54 16 28 H 0.09 0.66 8.06 -52.49 -0.42 0.24 16 29 H 0.11 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.09 1.13 5.51 -51.93 -0.29 0.84 16 31 H 0.05 0.52 7.50 -51.93 -0.39 0.13 16 32 H 0.05 0.49 7.50 -51.93 -0.39 0.10 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 1.13 5.51 -51.93 -0.29 0.85 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.42 5.36 8.04 -40.82 -0.33 5.04 16 39 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 41 H 0.14 1.93 6.44 -52.49 -0.34 1.59 16 42 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 43 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -30.76 374.45 -8.25 -39.01 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.88 Total: 4.69 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.44 Total: -10.48 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.58 Total: -41.20 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.13 Total: -13.23 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.76 -8.25 -39.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888864805.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.852 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds