Wall clock time and date at job start Tue Mar 31 2020 12:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50707 * 119.99714 * 2 1 4 4 C 1.52992 * 109.47380 * 359.97438 * 3 2 1 5 5 C 1.53001 * 109.46738 * 239.99661 * 3 2 1 6 6 C 1.53002 * 109.47099 * 120.00121 * 3 2 1 7 7 C 1.50699 * 109.46873 * 180.02562 * 6 3 2 8 8 O 1.21278 * 120.00056 * 359.97438 * 7 6 3 9 9 N 1.34774 * 119.99823 * 179.97438 * 7 6 3 10 10 C 1.39581 * 119.99990 * 179.97438 * 9 7 6 11 11 N 1.32276 * 119.72745 * 0.26696 * 10 9 7 12 12 C 1.31949 * 121.69079 * 180.30946 * 11 10 9 13 13 C 1.38093 * 120.95747 * 359.70619 * 12 11 10 14 14 C 1.38775 * 119.35013 * 359.97438 * 13 12 11 15 15 C 1.38801 * 118.45054 * 359.97438 * 14 13 12 16 16 O 1.35973 * 120.50125 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99587 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47325 * 59.99531 * 23 21 19 25 25 H 1.48496 * 109.47425 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47183 * 299.99726 * 23 21 19 27 27 H 1.08005 * 120.00116 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99477 * 180.02562 * 1 2 3 29 29 H 1.07998 * 119.99894 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47154 * 180.02562 * 4 3 2 31 31 H 1.09004 * 109.47361 * 300.00508 * 4 3 2 32 32 H 1.09002 * 109.46899 * 60.00355 * 4 3 2 33 33 H 1.09003 * 109.47447 * 299.99983 * 5 3 2 34 34 H 1.09004 * 109.47348 * 59.99884 * 5 3 2 35 35 H 1.09001 * 109.46986 * 180.02562 * 5 3 2 36 36 H 1.08995 * 109.47518 * 59.99576 * 6 3 2 37 37 H 1.09002 * 109.47042 * 299.99561 * 6 3 2 38 38 H 0.97000 * 120.00150 * 359.97438 * 9 7 6 39 39 H 1.08000 * 119.52722 * 179.72569 * 12 11 10 40 40 H 1.07997 * 120.32692 * 179.97438 * 13 12 11 41 41 H 1.08002 * 120.77560 * 180.02562 * 14 13 12 42 42 H 1.09000 * 109.47490 * 59.99648 * 17 16 15 43 43 H 1.09001 * 109.47232 * 299.99002 * 17 16 15 44 44 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 45 45 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 46 46 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 1.0693 2.4681 -0.0006 5 6 2.9431 1.3862 -1.2492 6 6 2.9431 1.3863 1.2492 7 6 3.6961 2.6917 1.2495 8 8 3.5444 3.4794 0.3399 9 7 4.5379 2.9838 2.2606 10 6 5.2357 4.1927 2.2606 11 7 5.0626 5.0499 1.2682 12 6 5.7067 6.2008 1.2261 13 6 6.5879 6.5587 2.2273 14 6 6.7960 5.6930 3.2918 15 6 6.1043 4.4898 3.3106 16 8 6.2769 3.6104 4.3332 17 6 7.1906 3.9871 5.3654 18 6 7.2519 2.8810 6.4208 19 6 8.2159 3.2779 7.5091 20 1 8.7334 4.2242 7.4533 21 6 8.4380 2.4326 8.5754 22 7 7.8081 1.2800 8.6431 23 14 9.6323 2.9248 9.9246 24 1 9.1717 4.1868 10.5572 25 1 9.6919 1.8513 10.9489 26 1 10.9825 3.1279 9.3407 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.6143 3.4120 -0.0011 31 1 0.4429 2.4101 -0.8908 32 1 0.4423 2.4105 0.8892 33 1 3.6515 0.5577 -1.2492 34 1 2.3165 1.3283 -2.1393 35 1 3.4884 2.3300 -1.2490 36 1 3.6514 0.5578 1.2493 37 1 2.3165 1.3286 2.1392 38 1 4.6589 2.3540 2.9883 39 1 5.5422 6.8728 0.3968 40 1 7.1100 7.5030 2.1824 41 1 7.4797 5.9499 4.0875 42 1 6.8526 4.9135 5.8297 43 1 8.1817 4.1360 4.9369 44 1 6.2608 2.7324 6.8493 45 1 7.5897 1.9544 5.9568 46 1 7.9641 0.6854 9.3934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888864805.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:13 Heat of formation + Delta-G solvation = -33.847182 kcal Electronic energy + Delta-G solvation = -26197.071248 eV Core-core repulsion = 22473.257893 eV Total energy + Delta-G solvation = -3723.813355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.08468 -40.85013 -39.18323 -38.07952 -35.87525 -35.43466 -32.92667 -32.45262 -32.02124 -30.62440 -28.80360 -28.17913 -27.16181 -25.06637 -24.13228 -23.30206 -22.58924 -21.24332 -19.65672 -19.13001 -18.63658 -18.24383 -17.99625 -17.18560 -17.09400 -16.50590 -16.48574 -16.22573 -15.87836 -15.45600 -15.17483 -15.12237 -14.84317 -14.38570 -14.31712 -14.13013 -13.71061 -13.58416 -13.29957 -13.01345 -12.80398 -12.72459 -12.66315 -12.49198 -12.44579 -12.02075 -11.87332 -11.75065 -11.63431 -11.58062 -11.48212 -11.43336 -10.97430 -10.59866 -10.37704 -10.23994 -10.00619 -8.82425 -8.25396 -6.38041 0.11149 0.30118 1.42072 1.42653 1.45190 1.53045 1.70498 1.93311 2.12550 2.44817 2.89645 3.09781 3.39371 3.66642 3.80776 3.86789 3.95189 4.03359 4.12789 4.24495 4.29206 4.33787 4.40866 4.47672 4.48272 4.63951 4.72714 4.74789 4.85635 4.96482 4.99012 5.07460 5.09906 5.15759 5.20129 5.29533 5.31716 5.46793 5.50703 5.53133 5.60987 5.74138 5.79970 5.97000 6.08215 6.26182 6.35021 6.76625 6.99221 7.31993 7.32961 8.87014 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013813 B = 0.002771 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.531615 B =10102.320626 C =11884.610060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C -0.018 4.018 4 C -0.151 4.151 5 C -0.145 4.145 6 C -0.125 4.125 7 C 0.501 3.499 8 O -0.497 6.497 9 N -0.656 5.656 10 C 0.313 3.687 11 N -0.469 5.469 12 C 0.073 3.927 13 C -0.148 4.148 14 C -0.150 4.150 15 C 0.038 3.962 16 O -0.329 6.329 17 C 0.084 3.916 18 C 0.031 3.969 19 C -0.546 4.546 20 H 0.070 0.930 21 C 0.005 3.995 22 N -0.929 5.929 23 Si 0.970 3.030 24 H -0.265 1.265 25 H -0.285 1.285 26 H -0.265 1.265 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.426 0.574 39 H 0.185 0.815 40 H 0.173 0.827 41 H 0.155 0.845 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.002 0.998 45 H 0.002 0.998 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.290 3.492 -16.683 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.169 4.169 3 C -0.018 4.018 4 C -0.208 4.208 5 C -0.202 4.202 6 C -0.164 4.164 7 C 0.290 3.710 8 O -0.369 6.369 9 N -0.304 5.304 10 C 0.081 3.919 11 N -0.185 5.185 12 C -0.083 4.083 13 C -0.169 4.169 14 C -0.177 4.177 15 C -0.013 4.013 16 O -0.242 6.242 17 C 0.010 3.990 18 C -0.007 4.007 19 C -0.584 4.584 20 H 0.089 0.911 21 C -0.194 4.194 22 N -0.568 5.568 23 Si 0.794 3.206 24 H -0.190 1.190 25 H -0.210 1.210 26 H -0.190 1.190 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.138 0.862 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.265 0.735 39 H 0.202 0.798 40 H 0.191 0.809 41 H 0.172 0.828 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.149 3.414 -17.886 20.846 hybrid contribution 1.302 -0.100 2.012 2.399 sum -8.847 3.314 -15.873 18.472 Atomic orbital electron populations 1.24160 0.96091 1.02706 1.00051 1.22922 0.96114 0.97157 1.00683 1.19346 0.94686 0.93925 0.93851 1.22111 0.98540 0.98742 1.01402 1.21985 0.99322 1.02528 0.96397 1.21808 0.99579 0.93892 1.01153 1.21433 0.78957 0.89727 0.80906 1.90649 1.61791 1.50241 1.34206 1.43739 1.42593 1.17478 1.26592 1.18068 0.93756 0.89456 0.90654 1.67689 1.24459 1.04099 1.22247 1.23045 0.93323 0.92455 0.99511 1.22258 0.99671 1.01543 0.93385 1.21892 1.01052 0.93053 1.01664 1.19790 0.98895 0.92468 0.90116 1.86024 1.62929 1.43640 1.31621 1.22941 0.90720 0.99443 0.85918 1.18934 0.96423 0.93340 0.91963 1.21374 1.25558 1.04956 1.06485 0.91148 1.25953 0.97942 0.94704 1.00827 1.70091 1.43609 1.10829 1.32268 0.85426 0.79130 0.78070 0.78003 1.18971 1.21008 1.18950 0.87996 0.87318 0.86248 0.91989 0.92238 0.92674 0.92588 0.92608 0.91897 0.86747 0.87188 0.73527 0.79767 0.80913 0.82782 0.91913 0.91892 0.98008 0.97996 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.83 13.70 67.78 0.93 -1.90 16 2 C -0.15 -2.39 8.76 25.65 0.22 -2.17 16 3 C -0.02 -0.34 0.74 -52.93 -0.04 -0.38 16 4 C -0.15 -3.16 6.83 71.98 0.49 -2.67 16 5 C -0.15 -3.04 8.16 71.98 0.59 -2.45 16 6 C -0.12 -2.42 4.75 29.85 0.14 -2.27 16 7 C 0.50 13.56 7.21 87.66 0.63 14.19 16 8 O -0.50 -15.90 9.60 -3.02 -0.03 -15.93 16 9 N -0.66 -18.99 5.39 -308.03 -1.66 -20.65 16 10 C 0.31 10.20 7.45 132.98 0.99 11.19 16 11 N -0.47 -14.98 7.88 -192.58 -1.52 -16.49 16 12 C 0.07 1.81 11.17 84.64 0.95 2.75 16 13 C -0.15 -3.22 10.10 22.36 0.23 -3.00 16 14 C -0.15 -4.08 9.14 22.53 0.21 -3.88 16 15 C 0.04 1.24 6.72 22.70 0.15 1.40 16 16 O -0.33 -12.20 9.39 -93.25 -0.88 -13.07 16 17 C 0.08 3.29 4.70 71.98 0.34 3.63 16 18 C 0.03 1.54 5.34 29.85 0.16 1.70 16 19 C -0.55 -29.11 9.11 25.60 0.23 -28.87 16 20 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 21 C 0.00 0.25 5.46 84.65 0.46 0.71 16 22 N -0.93 -54.23 13.29 21.45 0.28 -53.95 16 23 Si 0.97 41.85 29.54 68.60 2.03 43.88 16 24 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 27 H 0.10 1.51 5.69 -2.91 -0.02 1.50 16 28 H 0.11 1.28 8.06 -2.91 -0.02 1.26 16 29 H 0.12 1.62 8.06 -2.91 -0.02 1.59 16 30 H 0.06 1.65 5.51 -2.39 -0.01 1.63 16 31 H 0.06 1.13 7.50 -2.38 -0.02 1.12 16 32 H 0.05 1.06 7.50 -2.39 -0.02 1.04 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.06 1.67 5.51 -2.39 -0.01 1.65 16 36 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.43 11.28 8.04 -92.71 -0.75 10.54 16 39 H 0.19 3.29 8.06 -2.91 -0.02 3.27 16 40 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 41 H 0.15 3.80 6.44 -2.91 -0.02 3.79 16 42 H 0.06 2.30 7.70 -2.39 -0.02 2.28 16 43 H 0.06 2.30 7.70 -2.39 -0.02 2.29 16 44 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 46 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -67.75 374.45 5.15 -62.60 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.24 Total: 25.63 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 6.68 Total: -12.02 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -2.89 Total: -91.09 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.90 Total: -29.00 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -67.75 5.15 -62.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888864805.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.756 kcal (2) G-P(sol) polarization free energy of solvation -67.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds