Wall clock time and date at job start Tue Mar 31 2020 12:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47169 * 2 1 4 4 C 1.53006 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47916 * 55.02372 * 4 3 2 6 6 C 1.53086 * 109.49174 * 175.05621 * 4 3 2 7 7 C 1.53175 * 109.16349 * 177.59930 * 6 4 3 8 8 H 1.08998 * 109.61785 * 62.92502 * 7 6 4 9 9 C 1.50702 * 109.54603 * 183.15030 * 7 6 4 10 10 O 1.21273 * 119.99679 * 8.46815 * 9 7 6 11 11 N 1.34773 * 120.00411 * 188.46455 * 9 7 6 12 12 C 1.37204 * 120.00436 * 185.74531 * 11 9 7 13 13 H 1.08001 * 120.00571 * 216.40088 * 12 11 9 14 14 C 1.38896 * 119.99898 * 36.39828 * 12 11 9 15 15 N 1.31419 * 119.99858 * 19.31924 * 14 12 11 16 16 Si 1.86803 * 120.00240 * 199.32133 * 14 12 11 17 17 H 1.48497 * 109.47033 * 89.99930 * 16 14 12 18 18 H 1.48497 * 109.46913 * 210.00082 * 16 14 12 19 19 H 1.48499 * 109.46741 * 329.99703 * 16 14 12 20 20 C 1.39428 * 119.99953 * 5.74789 * 11 9 7 21 21 C 1.39058 * 119.69903 * 192.86798 * 20 11 9 22 22 C 1.38385 * 119.10083 * 179.97438 * 21 20 11 23 23 C 1.38828 * 118.49046 * 359.97438 * 22 21 20 24 24 C 1.38146 * 119.31204 * 359.97438 * 23 22 21 25 25 N 1.31886 * 120.85154 * 0.02562 * 24 23 22 26 26 C 1.53180 * 109.03366 * 303.01604 * 7 6 4 27 27 C 1.53086 * 109.16408 * 56.98111 * 26 7 6 28 28 O 1.42900 * 109.41630 * 302.39342 * 27 26 7 29 29 H 1.09000 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46986 * 299.99993 * 1 2 3 31 31 H 1.09001 * 109.47329 * 59.99422 * 1 2 3 32 32 H 1.09007 * 109.46478 * 240.00581 * 2 1 3 33 33 H 1.08995 * 109.46976 * 120.00822 * 2 1 3 34 34 H 1.08998 * 109.47144 * 60.00908 * 3 2 1 35 35 H 1.08995 * 109.47842 * 300.00291 * 3 2 1 36 36 H 1.08997 * 109.52578 * 57.68817 * 6 4 3 37 37 H 1.09007 * 109.51908 * 297.49976 * 6 4 3 38 38 H 0.96998 * 119.99934 * 184.94359 * 15 14 12 39 39 H 1.08001 * 120.45197 * 0.27486 * 21 20 11 40 40 H 1.07998 * 120.75711 * 180.02562 * 22 21 20 41 41 H 1.07998 * 120.34350 * 179.97438 * 23 22 21 42 42 H 1.07995 * 119.57396 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.52188 * 176.88892 * 26 7 6 44 44 H 1.09002 * 109.52376 * 297.07385 * 26 7 6 45 45 H 1.09010 * 109.48065 * 62.37504 * 27 26 7 46 46 H 1.09004 * 109.48146 * 182.40728 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9332 0.8535 -0.8429 6 6 4.0808 2.8802 -0.1250 7 6 5.6114 2.8771 -0.0646 8 1 6.0100 2.3200 -0.9124 9 6 6.1206 4.2948 -0.1085 10 8 5.3425 5.2213 -0.0260 11 7 7.4406 4.5330 -0.2393 12 6 7.9171 5.8173 -0.1611 13 1 8.7404 6.1270 -0.7877 14 6 7.3406 6.7192 0.7240 15 7 6.6230 6.2811 1.7341 16 14 7.5851 8.5548 0.4786 17 1 6.4997 9.0879 -0.3832 18 1 7.5523 9.2390 1.7962 19 1 8.8979 8.7966 -0.1721 20 6 8.3221 3.4743 -0.4542 21 6 9.6910 3.6799 -0.3219 22 6 10.5547 2.6204 -0.5376 23 6 10.0172 1.3868 -0.8789 24 6 8.6467 1.2541 -0.9919 25 7 7.8480 2.2820 -0.7804 26 6 6.0584 2.2123 1.2410 27 6 5.4712 0.8003 1.3127 28 8 4.0471 0.8728 1.2200 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.6851 3.4796 0.6948 37 1 3.7547 3.3016 -1.0760 38 1 6.1614 6.9104 2.3101 39 1 10.0747 4.6521 -0.0498 40 1 11.6226 2.7500 -0.4417 41 1 10.6636 0.5396 -1.0544 42 1 8.2240 0.2963 -1.2568 43 1 7.1466 2.1560 1.2672 44 1 5.7026 2.7982 2.0886 45 1 5.8593 0.2029 0.4876 46 1 5.7509 0.3379 2.2594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892469315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:12 Heat of formation + Delta-G solvation = -47.236298 kcal Electronic energy + Delta-G solvation = -28237.210597 eV Core-core repulsion = 24512.816647 eV Total energy + Delta-G solvation = -3724.393951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.92354 -40.33502 -39.45929 -36.38587 -35.90772 -34.88046 -33.74528 -33.03405 -32.04936 -30.55339 -28.39943 -27.51208 -25.67941 -24.23443 -23.80371 -23.56398 -22.06917 -21.61575 -20.81228 -19.36507 -18.19557 -17.41291 -17.36797 -16.89165 -16.67783 -16.38125 -16.06537 -15.78480 -15.54171 -15.44075 -15.28213 -14.97350 -14.64677 -14.25735 -14.05947 -13.77942 -13.68005 -13.60022 -13.43423 -13.01439 -12.93739 -12.84173 -12.58873 -12.37002 -12.24495 -12.14421 -12.10540 -11.83556 -11.48714 -11.45860 -11.42951 -11.18400 -10.75490 -10.52639 -10.41720 -10.00283 -9.81995 -8.87741 -8.36678 -6.20491 0.43535 0.60601 1.32486 1.39933 1.46567 2.14144 2.31702 2.77590 2.90489 2.96832 3.37289 3.54410 3.79981 3.96574 4.02061 4.08314 4.17888 4.23092 4.27291 4.35170 4.37080 4.49350 4.53644 4.56359 4.61034 4.68192 4.78620 4.82456 4.89624 4.92668 4.94844 5.01213 5.10109 5.14638 5.15569 5.25440 5.30246 5.32321 5.38174 5.42283 5.53666 5.54595 5.56870 5.91684 6.10809 6.36411 6.64794 6.87506 7.21790 7.46114 8.07482 8.66990 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011943 B = 0.005082 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.872986 B = 5508.112241 C = 7377.544092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.110 4.110 4 C 0.103 3.897 5 H 0.077 0.923 6 C -0.126 4.126 7 C -0.093 4.093 8 H 0.146 0.854 9 C 0.487 3.513 10 O -0.554 6.554 11 N -0.404 5.404 12 C -0.378 4.378 13 H 0.095 0.905 14 C 0.023 3.977 15 N -0.861 5.861 16 Si 0.981 3.019 17 H -0.286 1.286 18 H -0.279 1.279 19 H -0.247 1.247 20 C 0.338 3.662 21 C -0.227 4.227 22 C -0.043 4.043 23 C -0.221 4.221 24 C 0.122 3.878 25 N -0.541 5.541 26 C -0.113 4.113 27 C 0.078 3.922 28 O -0.391 6.391 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.033 0.967 37 H 0.063 0.937 38 H 0.264 0.736 39 H 0.119 0.881 40 H 0.157 0.843 41 H 0.167 0.833 42 H 0.190 0.810 43 H 0.063 0.937 44 H 0.018 0.982 45 H 0.077 0.923 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 -15.859 -4.867 16.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.148 4.148 4 C 0.045 3.955 5 H 0.095 0.905 6 C -0.164 4.164 7 C -0.114 4.114 8 H 0.163 0.837 9 C 0.279 3.721 10 O -0.431 6.431 11 N -0.115 5.115 12 C -0.504 4.504 13 H 0.113 0.887 14 C -0.185 4.185 15 N -0.495 5.495 16 Si 0.805 3.195 17 H -0.213 1.213 18 H -0.205 1.205 19 H -0.170 1.170 20 C 0.110 3.890 21 C -0.251 4.251 22 C -0.069 4.069 23 C -0.242 4.242 24 C -0.036 4.036 25 N -0.258 5.258 26 C -0.151 4.151 27 C 0.002 3.998 28 O -0.311 6.311 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.137 0.863 40 H 0.175 0.825 41 H 0.184 0.816 42 H 0.206 0.794 43 H 0.082 0.918 44 H 0.037 0.963 45 H 0.096 0.904 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.893 -15.344 -4.510 16.018 hybrid contribution 1.071 2.157 0.344 2.432 sum 0.178 -13.187 -4.166 13.831 Atomic orbital electron populations 1.21772 0.95123 1.02164 1.01736 1.21426 0.96220 0.95104 1.02474 1.21653 0.91807 0.98836 1.02479 1.22139 0.95163 0.90921 0.87249 0.90484 1.22046 0.94933 0.98225 1.01226 1.21736 0.94930 0.92395 1.02340 0.83742 1.21267 0.81773 0.91803 0.77297 1.90450 1.55932 1.48158 1.48531 1.41495 1.04846 1.04911 1.60226 1.19465 1.22448 0.86087 1.22416 0.88718 1.26085 0.95653 1.04597 0.92155 1.70029 1.28992 1.37283 1.13195 0.85137 0.79166 0.77633 0.77610 1.21290 1.20469 1.17027 1.19238 0.89221 0.87051 0.93523 1.21615 0.92532 1.01975 1.08963 1.21697 1.00547 0.91716 0.92970 1.22178 0.96644 0.98781 1.06619 1.23196 0.90935 0.96801 0.92694 1.67523 1.39866 0.99360 1.19099 1.21805 1.00628 0.97700 0.94969 1.22542 0.80175 0.93803 1.03300 1.87849 1.21676 1.81956 1.39596 0.91636 0.93350 0.92374 0.91057 0.92113 0.92824 0.89869 0.94795 0.91875 0.92678 0.86337 0.82493 0.81591 0.79369 0.91844 0.96284 0.90450 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.91 71.98 0.71 -1.96 16 2 C -0.11 -2.39 5.83 30.59 0.18 -2.21 16 3 C -0.11 -2.87 4.92 30.59 0.15 -2.72 16 4 C 0.10 3.11 2.64 30.63 0.08 3.20 16 5 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 6 C -0.13 -5.00 4.10 30.68 0.13 -4.87 16 7 C -0.09 -3.96 1.70 -11.42 -0.02 -3.97 16 8 H 0.15 5.67 5.61 -2.39 -0.01 5.66 16 9 C 0.49 26.58 6.09 87.66 0.53 27.11 16 10 O -0.55 -34.72 13.30 -3.01 -0.04 -34.76 16 11 N -0.40 -21.55 2.78 -464.39 -1.29 -22.85 16 12 C -0.38 -21.26 8.09 84.01 0.68 -20.58 16 13 H 0.10 5.05 7.34 -2.91 -0.02 5.03 16 14 C 0.02 1.31 4.37 84.91 0.37 1.68 16 15 N -0.86 -53.12 11.25 21.65 0.24 -52.88 16 16 Si 0.98 45.42 29.60 68.60 2.03 47.45 16 17 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 20 C 0.34 14.80 6.23 132.90 0.83 15.62 16 21 C -0.23 -8.74 9.27 22.50 0.21 -8.53 16 22 C -0.04 -1.19 10.17 22.45 0.23 -0.96 16 23 C -0.22 -4.96 10.11 22.39 0.23 -4.74 16 24 C 0.12 3.11 11.18 84.66 0.95 4.05 16 25 N -0.54 -19.37 4.44 -192.96 -0.86 -20.23 16 26 C -0.11 -4.51 4.82 30.68 0.15 -4.36 16 27 C 0.08 2.33 6.84 72.01 0.49 2.82 16 28 O -0.39 -12.60 9.94 -148.98 -1.48 -14.08 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.06 1.37 7.82 -2.39 -0.02 1.36 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.03 1.58 7.91 -2.39 -0.02 1.56 16 37 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 38 H 0.26 15.75 8.32 -92.71 -0.77 14.97 16 39 H 0.12 4.92 6.81 -2.91 -0.02 4.90 16 40 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 41 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 42 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 43 H 0.06 2.61 5.86 -2.39 -0.01 2.60 16 44 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 46 H 0.10 2.69 8.14 -2.38 -0.02 2.68 16 Total: -1.00 -75.63 362.31 5.45 -70.17 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.96 Total: 27.60 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 5.89 Total: -0.42 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -1.91 Total: -95.96 kcal Atomic # 8 Polarization: -47.32 SS G_CDS: -1.52 Total: -48.84 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -75.63 5.45 -70.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892469315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.935 kcal (2) G-P(sol) polarization free energy of solvation -75.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds