Wall clock time and date at job start Tue Mar 31 2020 12:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46927 * 2 1 4 4 C 1.53003 * 109.46927 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47957 * 305.02098 * 4 3 2 6 6 C 1.53090 * 109.47882 * 185.00188 * 4 3 2 7 7 C 1.53177 * 109.16282 * 182.40906 * 6 4 3 8 8 H 1.08994 * 109.54521 * 176.93357 * 7 6 4 9 9 C 1.50701 * 109.54078 * 297.11072 * 7 6 4 10 10 O 1.21273 * 120.00235 * 324.77359 * 9 7 6 11 11 N 1.34776 * 119.99827 * 144.78068 * 9 7 6 12 12 C 1.37217 * 119.99730 * 197.01345 * 11 9 7 13 13 H 1.07995 * 119.99838 * 182.01950 * 12 11 9 14 14 C 1.38893 * 120.00247 * 2.02359 * 12 11 9 15 15 N 1.31414 * 120.00137 * 73.37731 * 14 12 11 16 16 Si 1.86801 * 120.00090 * 253.38647 * 14 12 11 17 17 H 1.48496 * 109.47326 * 59.99349 * 16 14 12 18 18 H 1.48493 * 109.47233 * 179.97438 * 16 14 12 19 19 H 1.48510 * 109.46779 * 299.99669 * 16 14 12 20 20 C 1.39427 * 120.00306 * 17.01282 * 11 9 7 21 21 C 1.39061 * 119.69665 * 42.24075 * 20 11 9 22 22 C 1.38380 * 119.10113 * 179.77598 * 21 20 11 23 23 C 1.38827 * 118.48803 * 0.48484 * 22 21 20 24 24 C 1.38150 * 119.31210 * 359.75657 * 23 22 21 25 25 N 1.31875 * 120.85255 * 359.97438 * 24 23 22 26 26 C 1.53175 * 109.03963 * 56.97567 * 7 6 4 27 27 C 1.53094 * 109.16437 * 303.02486 * 26 7 6 28 28 O 1.42898 * 109.48140 * 65.05515 * 4 3 2 29 29 H 1.09004 * 109.47408 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46748 * 60.00006 * 1 2 3 31 31 H 1.08998 * 109.47366 * 300.00337 * 1 2 3 32 32 H 1.09000 * 109.46748 * 119.99994 * 2 1 3 33 33 H 1.08998 * 109.47366 * 239.99663 * 2 1 3 34 34 H 1.09000 * 109.47402 * 299.99593 * 3 2 1 35 35 H 1.08998 * 109.47373 * 59.99667 * 3 2 1 36 36 H 1.09006 * 109.52194 * 302.30600 * 6 4 3 37 37 H 1.09000 * 109.53025 * 62.49991 * 6 4 3 38 38 H 0.96995 * 120.00496 * 184.01464 * 15 14 12 39 39 H 1.08003 * 120.44766 * 359.97438 * 21 20 11 40 40 H 1.08001 * 120.75882 * 180.26510 * 22 21 20 41 41 H 1.08000 * 120.34801 * 179.77024 * 23 22 21 42 42 H 1.08001 * 119.57522 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.52281 * 62.92562 * 26 7 6 44 44 H 1.09000 * 109.52656 * 183.11610 * 26 7 6 45 45 H 1.08996 * 109.48429 * 177.59074 * 27 26 7 46 46 H 1.09005 * 109.47676 * 297.62418 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9332 0.8529 0.8425 6 6 4.0804 2.8803 0.1265 7 6 5.6110 2.8776 0.0658 8 1 5.9791 3.9029 0.1001 9 6 6.1605 2.1052 1.2374 10 8 5.5970 2.1486 2.3104 11 7 7.2784 1.3664 1.0928 12 6 7.5885 0.4028 2.0192 13 1 8.5007 -0.1668 1.9210 14 6 6.7293 0.1601 3.0831 15 7 5.5927 -0.4676 2.8798 16 14 7.1890 0.7261 4.8029 17 1 7.3603 2.2011 4.8094 18 1 6.1115 0.3492 5.7526 19 1 8.4606 0.0783 5.2138 20 6 8.1197 1.5810 0.0018 21 6 8.4081 2.8806 -0.4005 22 6 9.2483 3.0795 -1.4819 23 6 9.7649 1.9672 -2.1325 24 6 9.4317 0.7045 -1.6815 25 7 8.6326 0.5458 -0.6446 26 6 6.0582 2.2142 -1.2403 27 6 5.4713 0.8021 -1.3134 28 8 4.0471 0.8742 -1.2206 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.6846 3.4804 -0.6929 37 1 3.7543 3.3008 1.0778 38 1 4.9664 -0.5858 3.6109 39 1 7.9847 3.7232 0.1260 40 1 9.4938 4.0772 -1.8145 41 1 10.4206 2.0876 -2.9821 42 1 9.8315 -0.1637 -2.1842 43 1 5.7022 2.8007 -2.0873 44 1 7.1464 2.1581 -1.2666 45 1 5.7509 0.3407 -2.2604 46 1 5.8595 0.2040 -0.4888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892469318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:19 Heat of formation + Delta-G solvation = 6.776890 kcal Electronic energy + Delta-G solvation = -29268.092475 eV Core-core repulsion = 25546.040712 eV Total energy + Delta-G solvation = -3722.051763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.21226 -38.95806 -37.71449 -34.82549 -34.52875 -33.55995 -32.31195 -31.75977 -30.65127 -29.36858 -26.87661 -25.72771 -24.17149 -22.86487 -22.76616 -22.08591 -20.87055 -20.60789 -19.19832 -17.67689 -16.28982 -15.95012 -15.82210 -15.72379 -15.55292 -15.04339 -14.67912 -14.41043 -14.20788 -14.09689 -13.62751 -13.40197 -13.15252 -12.85212 -12.60247 -12.47299 -12.36563 -12.22763 -11.96030 -11.78808 -11.55596 -11.23965 -11.07050 -11.04275 -10.87142 -10.66925 -10.52513 -10.33077 -10.27104 -10.12064 -9.74560 -9.64993 -9.18135 -8.97610 -8.80717 -8.59737 -8.02135 -7.49996 -6.93225 -3.61879 1.58781 1.88246 3.23753 3.38410 3.44353 3.68051 3.93607 4.34244 4.36796 4.53096 4.69136 4.94357 5.06335 5.20519 5.25950 5.32790 5.33552 5.42808 5.47388 5.57170 5.63450 5.65940 5.69263 5.78690 5.87176 5.97799 6.02851 6.09872 6.12579 6.18679 6.20043 6.24611 6.30130 6.40571 6.41618 6.45823 6.55885 6.57371 6.61738 6.69521 6.74928 6.80583 7.16674 7.28738 7.79477 7.85923 8.33124 8.74398 8.79837 9.31747 9.69141 10.06470 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010612 B = 0.007042 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.888050 B = 3975.293872 C = 5671.266615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.104 4.104 4 C 0.085 3.915 5 H 0.080 0.920 6 C -0.126 4.126 7 C -0.100 4.100 8 H 0.087 0.913 9 C 0.462 3.538 10 O -0.524 6.524 11 N -0.357 5.357 12 C -0.455 4.455 13 H 0.111 0.889 14 C 0.175 3.825 15 N -0.715 5.715 16 Si 0.857 3.143 17 H -0.269 1.269 18 H -0.289 1.289 19 H -0.277 1.277 20 C 0.369 3.631 21 C -0.222 4.222 22 C -0.058 4.058 23 C -0.249 4.249 24 C 0.130 3.870 25 N -0.507 5.507 26 C -0.201 4.201 27 C 0.062 3.938 28 O -0.385 6.385 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.277 0.723 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.145 0.855 43 H 0.064 0.936 44 H 0.123 0.877 45 H 0.080 0.920 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.804 4.945 -8.632 10.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.142 4.142 4 C 0.028 3.972 5 H 0.098 0.902 6 C -0.164 4.164 7 C -0.121 4.121 8 H 0.105 0.895 9 C 0.255 3.745 10 O -0.403 6.403 11 N -0.065 5.065 12 C -0.572 4.572 13 H 0.129 0.871 14 C -0.054 4.054 15 N -0.338 5.338 16 Si 0.679 3.321 17 H -0.194 1.194 18 H -0.215 1.215 19 H -0.202 1.202 20 C 0.139 3.861 21 C -0.246 4.246 22 C -0.083 4.083 23 C -0.271 4.271 24 C -0.030 4.030 25 N -0.224 5.224 26 C -0.238 4.238 27 C -0.015 4.015 28 O -0.304 6.304 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.163 0.837 43 H 0.082 0.918 44 H 0.140 0.860 45 H 0.098 0.902 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.758 3.895 -7.796 9.140 hybrid contribution 0.583 1.281 0.630 1.542 sum -2.175 5.176 -7.166 9.104 Atomic orbital electron populations 1.21774 0.96509 1.01153 1.01222 1.21464 0.94793 0.96893 1.02849 1.21555 0.93456 0.97434 1.01744 1.22182 0.93750 0.93083 0.88224 0.90214 1.21982 0.93631 0.98312 1.02439 1.21278 0.96828 0.99869 0.94160 0.89459 1.19935 0.82209 0.82729 0.89672 1.90476 1.59209 1.63030 1.27556 1.41561 1.18177 1.30305 1.16467 1.18753 1.09434 1.24235 1.04739 0.87117 1.24791 0.92260 0.87971 1.00399 1.70724 1.08974 1.17658 1.36401 0.87166 0.78620 0.81872 0.84445 1.19411 1.21542 1.20248 1.18198 0.92599 0.88515 0.86779 1.21472 1.04319 0.96811 1.01969 1.21119 0.94438 0.98836 0.93938 1.21649 1.07344 0.93789 1.04344 1.22422 0.92426 0.96335 0.91794 1.67451 1.12673 1.34006 1.08221 1.23513 1.05914 0.97863 0.96483 1.22570 0.80630 0.95698 1.02569 1.87770 1.21295 1.82710 1.38634 0.93076 0.93135 0.93101 0.91804 0.91395 0.91936 0.91129 0.91524 0.90324 0.91129 0.85691 0.85792 0.86096 0.83721 0.91752 0.86016 0.90160 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.89 5.83 -26.73 -0.16 -2.05 16 3 C -0.10 -1.67 4.92 -26.73 -0.13 -1.80 16 4 C 0.09 1.65 2.41 -26.68 -0.06 1.58 16 5 H 0.08 1.88 7.12 -51.93 -0.37 1.51 16 6 C -0.13 -2.27 4.64 -26.59 -0.12 -2.40 16 7 C -0.10 -1.92 2.20 -91.59 -0.20 -2.12 16 8 H 0.09 1.50 7.18 -51.93 -0.37 1.13 16 9 C 0.46 10.94 4.75 -10.99 -0.05 10.88 16 10 O -0.52 -13.82 12.59 5.56 0.07 -13.75 16 11 N -0.36 -8.70 1.98 -71.84 -0.14 -8.84 16 12 C -0.46 -12.28 9.24 -14.90 -0.14 -12.42 16 13 H 0.11 3.10 7.97 -52.49 -0.42 2.68 16 14 C 0.17 4.65 2.97 -17.49 -0.05 4.60 16 15 N -0.72 -19.10 13.26 55.49 0.74 -18.36 16 16 Si 0.86 20.90 28.92 -169.99 -4.92 15.98 16 17 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.37 7.83 3.50 -154.64 -0.54 7.29 16 21 C -0.22 -3.94 6.55 -39.22 -0.26 -4.19 16 22 C -0.06 -0.84 9.83 -39.31 -0.39 -1.23 16 23 C -0.25 -3.51 10.08 -39.40 -0.40 -3.91 16 24 C 0.13 2.12 11.09 -17.57 -0.19 1.93 16 25 N -0.51 -10.48 9.86 -22.47 -0.22 -10.71 16 26 C -0.20 -3.68 4.62 -26.59 -0.12 -3.80 16 27 C 0.06 1.25 6.28 37.21 0.23 1.49 16 28 O -0.38 -7.72 9.94 -35.23 -0.35 -8.07 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.11 7.83 -51.93 -0.41 0.70 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.45 7.76 -51.93 -0.40 1.04 16 38 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.13 2.13 6.51 -52.48 -0.34 1.79 16 40 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.12 2.24 1.83 -97.79 -0.18 2.06 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.07 1.79 6.45 -51.93 -0.33 1.46 16 LS Contribution 355.08 15.07 5.35 5.35 Total: -1.00 -29.44 355.08 -8.72 -38.16 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.03 Total: 7.85 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.21 Total: -7.62 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.37 Total: -37.91 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.28 Total: -21.82 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.92 Total: 15.98 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.44 -8.72 -38.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892469318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.940 kcal (2) G-P(sol) polarization free energy of solvation -29.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds