Wall clock time and date at job start Tue Mar 31 2020 12:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.47196 * 109.47206 * 2 1 4 4 C 2.64602 * 109.47053 * 359.97438 * 2 1 3 5 5 C 4.11794 * 109.46981 * 0.02562 * 2 1 3 6 6 O 1.45205 * 109.47209 * 91.23680 * 5 4 3 7 7 C 1.34228 * 117.00187 * 179.97438 * 6 5 4 8 8 O 1.20820 * 120.00153 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99885 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.47110 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.47116 * 179.97438 * 10 9 7 12 12 C 1.39862 * 126.04094 * 269.68901 * 11 10 9 13 13 C 1.50702 * 125.90180 * 0.02562 * 12 11 10 14 14 N 1.30842 * 108.19992 * 179.81747 * 12 11 10 15 15 N 1.40084 * 108.20663 * 0.44091 * 14 12 11 16 16 C 1.46495 * 126.04013 * 179.73793 * 15 14 12 17 17 C 1.50699 * 109.47131 * 269.98016 * 16 15 14 18 18 H 1.08002 * 119.99767 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00208 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99755 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00053 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47327 * 59.99628 * 21 19 17 23 23 H 1.48507 * 109.47304 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47123 * 299.99830 * 21 19 17 25 25 C 1.34950 * 107.92381 * 359.71898 * 15 14 12 26 26 C 1.50694 * 126.12576 * 179.97438 * 25 15 14 27 27 H 1.09001 * 109.47193 * 299.99627 * 1 2 3 28 28 H 1.08992 * 109.47249 * 60.00197 * 1 2 3 29 29 H 1.09002 * 109.47065 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47193 * 240.00373 * 2 1 3 31 31 H 1.08997 * 109.47188 * 120.00282 * 2 1 3 32 32 H 1.08995 * 109.48103 * 331.23300 * 5 4 3 33 33 H 1.09005 * 109.46954 * 211.22971 * 5 4 3 34 34 H 1.09000 * 109.47543 * 59.99651 * 9 7 6 35 35 H 1.09008 * 109.47338 * 300.00164 * 9 7 6 36 36 H 1.09000 * 109.46884 * 60.00335 * 10 9 7 37 37 H 1.09000 * 109.46955 * 299.99651 * 10 9 7 38 38 H 1.08998 * 109.47393 * 89.99256 * 13 12 11 39 39 H 1.09001 * 109.46747 * 209.99996 * 13 12 11 40 40 H 1.08998 * 109.46776 * 329.99757 * 13 12 11 41 41 H 1.09001 * 109.47188 * 29.97306 * 16 15 14 42 42 H 1.08997 * 109.47530 * 149.97532 * 16 15 14 43 43 H 0.96999 * 120.00262 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.47170 * 270.02464 * 26 25 15 45 45 H 1.09004 * 109.47112 * 30.02444 * 26 25 15 46 46 H 1.09003 * 109.46820 * 150.02019 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 6 2.4120 2.4947 -0.0011 5 6 2.9025 3.8825 0.0017 6 8 3.0369 4.3512 -1.3660 7 6 3.4764 5.6076 -1.5393 8 8 3.7398 6.2932 -0.5799 9 6 3.6415 6.1630 -2.9304 10 6 4.1521 7.6028 -2.8474 11 6 4.3178 8.1580 -4.2387 12 6 5.4762 8.0898 -5.0194 13 6 6.7778 7.4466 -4.6151 14 7 5.2333 8.6768 -6.1632 15 7 3.9138 9.1468 -6.1425 16 6 3.2392 9.8694 -7.2236 17 6 3.4553 11.3506 -7.0490 18 1 4.0366 11.7170 -6.2158 19 6 2.9108 12.2380 -7.9530 20 7 2.2033 11.7918 -8.9678 21 14 3.1781 14.0740 -7.7362 22 1 4.6327 14.3704 -7.7741 23 1 2.4943 14.8067 -8.8321 24 1 2.6191 14.5047 -6.4295 25 6 3.3738 8.8159 -4.9509 26 6 1.9709 9.1242 -4.4949 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.8726 3.9241 0.4969 33 1 2.1947 4.5169 0.5353 34 1 2.6804 6.1469 -3.4445 35 1 4.3585 5.5547 -3.4818 36 1 5.1133 7.6183 -2.3337 37 1 3.4354 8.2113 -2.2960 38 1 6.7727 6.3980 -4.9124 39 1 7.6045 7.9597 -5.1063 40 1 6.8973 7.5171 -3.5340 41 1 3.6487 9.5532 -8.1829 42 1 2.1715 9.6522 -7.1949 43 1 1.8199 12.4161 -9.6036 44 1 1.9569 10.0905 -3.9907 45 1 1.3067 9.1553 -5.3586 46 1 1.6345 8.3497 -3.8056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893833826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:45 Heat of formation + Delta-G solvation = -10.259739 kcal Electronic energy + Delta-G solvation = -25109.608424 eV Core-core repulsion = 21386.817897 eV Total energy + Delta-G solvation = -3722.790527 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.18435 -41.48855 -37.91242 -36.11797 -36.05496 -34.95511 -34.19797 -32.83480 -31.81605 -30.52331 -28.93072 -27.85487 -27.61056 -25.50394 -24.38466 -23.92036 -21.78150 -20.32367 -20.16573 -18.83407 -18.70350 -18.51968 -17.78170 -17.28047 -16.77619 -16.28496 -15.91769 -15.70880 -15.59839 -15.17958 -14.72201 -14.67111 -14.46474 -14.11569 -13.98724 -13.91497 -13.75941 -13.58498 -13.35044 -13.26843 -13.19613 -12.84981 -12.77106 -12.65481 -12.60647 -12.57934 -12.50491 -12.22532 -12.16805 -11.91658 -11.73050 -11.63454 -11.15038 -10.93133 -10.78404 -10.75127 -9.84072 -9.05514 -8.34929 -6.52630 0.96462 1.18122 1.19276 1.36315 1.37773 1.46832 1.56907 1.88964 1.94277 2.26809 2.33171 2.94731 3.09422 3.76166 3.88037 3.93824 4.12931 4.15805 4.20854 4.26268 4.32628 4.33748 4.39441 4.45837 4.55711 4.61275 4.66958 4.72965 4.79998 4.81859 4.88168 4.89780 4.93248 5.04799 5.05402 5.12099 5.15234 5.23399 5.33732 5.39650 5.40958 5.49936 5.55872 5.80144 6.05032 6.31348 6.47494 6.61839 6.72008 7.11566 7.18628 8.71024 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019888 B = 0.002071 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.568141 B =13515.079748 C =13999.594689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.019 4.019 3 C -0.136 4.136 4 C -0.237 4.237 5 C 0.183 3.817 6 O -0.362 6.362 7 C 0.475 3.525 8 O -0.529 6.529 9 C -0.101 4.101 10 C -0.008 4.008 11 C -0.260 4.260 12 C 0.055 3.945 13 C -0.064 4.064 14 N -0.351 5.351 15 N -0.355 5.355 16 C 0.274 3.726 17 C -0.554 4.554 18 H 0.048 0.952 19 C 0.022 3.978 20 N -0.918 5.918 21 Si 0.971 3.029 22 H -0.276 1.276 23 H -0.272 1.272 24 H -0.265 1.265 25 C 0.081 3.919 26 C -0.085 4.085 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.019 0.981 42 H 0.047 0.953 43 H 0.274 0.726 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.572 -21.060 18.839 28.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.055 4.055 3 C -0.136 4.136 4 C -0.237 4.237 5 C 0.111 3.889 6 O -0.279 6.279 7 C 0.319 3.681 8 O -0.418 6.418 9 C -0.138 4.138 10 C -0.046 4.046 11 C -0.272 4.272 12 C -0.109 4.109 13 C -0.123 4.123 14 N -0.174 5.174 15 N -0.135 5.135 16 C 0.155 3.845 17 C -0.592 4.592 18 H 0.066 0.934 19 C -0.179 4.179 20 N -0.556 5.556 21 Si 0.794 3.206 22 H -0.201 1.201 23 H -0.197 1.197 24 H -0.190 1.190 25 C -0.049 4.049 26 C -0.143 4.143 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.037 0.963 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.219 -20.418 17.698 27.048 hybrid contribution -0.234 1.132 0.257 1.184 sum -1.452 -19.286 17.955 26.390 Atomic orbital electron populations 1.21754 0.93287 1.03537 1.02040 1.19019 0.96522 0.84825 1.05169 1.23346 0.99224 0.95421 0.95647 1.21808 1.01960 0.94304 1.05662 1.19506 1.02430 0.86193 0.80787 1.86567 1.77720 1.31510 1.32130 1.24135 0.71988 0.78674 0.93274 1.90669 1.47706 1.59636 1.43834 1.21490 1.06058 0.97045 0.89250 1.19463 1.02496 0.92431 0.90221 1.19607 0.93430 1.14091 1.00038 1.22814 0.98189 0.98488 0.91447 1.20238 0.89347 1.00155 1.02541 1.77228 0.96400 1.20047 1.23747 1.49006 1.08691 1.41991 1.13773 1.19132 0.91562 0.90436 0.83358 1.21405 1.34626 0.91234 1.11907 0.93368 1.25749 0.93957 1.04179 0.94045 1.69994 1.34200 1.37220 1.14214 0.85417 0.78424 0.78235 0.78486 1.20140 1.19668 1.18950 1.21495 0.98188 0.98256 0.86984 1.20470 0.88413 1.03494 1.01892 0.92698 0.93148 0.89491 0.87691 0.87303 0.87885 0.88131 0.86734 0.86205 0.90087 0.90880 0.89089 0.91714 0.88682 0.96328 0.93478 0.91738 0.90352 0.91903 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.87 71.98 0.71 -0.48 16 2 C -0.02 -0.17 6.42 28.79 0.18 0.01 16 3 C -0.14 -2.31 13.34 31.12 0.42 -1.89 16 4 C -0.24 -4.65 13.74 31.12 0.43 -4.23 16 5 C 0.18 3.39 5.94 70.17 0.42 3.80 16 6 O -0.36 -7.76 10.18 -51.40 -0.52 -8.29 16 7 C 0.47 10.36 7.96 71.23 0.57 10.92 16 8 O -0.53 -13.86 15.73 21.98 0.35 -13.51 16 9 C -0.10 -2.03 5.79 29.85 0.17 -1.85 16 10 C -0.01 -0.19 4.41 29.85 0.13 -0.06 16 11 C -0.26 -8.68 5.35 -20.14 -0.11 -8.79 16 12 C 0.06 2.02 7.22 43.10 0.31 2.33 16 13 C -0.06 -1.64 10.26 71.24 0.73 -0.91 16 14 N -0.35 -16.32 12.58 -47.38 -0.60 -16.91 16 15 N -0.35 -16.90 3.60 -338.42 -1.22 -18.12 16 16 C 0.27 14.70 6.00 85.63 0.51 15.21 16 17 C -0.55 -31.47 9.39 25.60 0.24 -31.23 16 18 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 19 C 0.02 1.20 5.46 84.66 0.46 1.67 16 20 N -0.92 -52.51 13.29 21.45 0.28 -52.22 16 21 Si 0.97 43.55 29.54 68.60 2.03 45.57 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 25 C 0.08 3.13 6.93 41.40 0.29 3.42 16 26 C -0.08 -2.66 9.72 71.23 0.69 -1.97 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.10 1.67 8.13 -2.39 -0.02 1.65 16 33 H 0.10 1.68 8.13 -2.38 -0.02 1.66 16 34 H 0.11 2.13 8.14 -2.39 -0.02 2.12 16 35 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.08 1.90 7.20 -2.39 -0.02 1.88 16 37 H 0.07 1.81 7.73 -2.39 -0.02 1.80 16 38 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.09 1.94 7.25 -2.39 -0.02 1.92 16 41 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.05 2.50 7.05 -2.39 -0.02 2.48 16 43 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 44 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.06 2.10 7.08 -2.39 -0.02 2.08 16 46 H 0.11 2.52 7.77 -2.39 -0.02 2.50 16 Total: -1.00 -71.83 400.07 7.45 -64.39 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.97 Total: 13.13 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 6.16 Total: -14.03 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -1.53 Total: -87.26 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.18 Total: -21.80 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -71.83 7.45 -64.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893833826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.127 kcal (2) G-P(sol) polarization free energy of solvation -71.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds