Wall clock time and date at job start Tue Mar 31 2020 12:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.50697 * 109.46690 * 240.00295 * 2 1 3 5 5 H 1.08002 * 119.99965 * 239.99971 * 4 2 1 6 6 C 1.37877 * 120.00490 * 59.99966 * 4 2 1 7 7 N 1.31514 * 119.99545 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00173 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47330 * 89.99925 * 8 6 4 10 10 H 1.48495 * 109.47202 * 209.99886 * 8 6 4 11 11 H 1.48496 * 109.47402 * 329.99928 * 8 6 4 12 12 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 13 13 N 1.46498 * 109.47059 * 299.99645 * 12 2 1 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 2 15 15 O 1.21593 * 119.99949 * 0.28071 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.27942 * 14 13 12 17 17 C 1.46499 * 120.00065 * 180.02562 * 16 14 13 18 18 H 1.09006 * 110.72774 * 34.29990 * 17 16 14 19 19 C 1.54339 * 110.82345 * 270.89000 * 17 16 14 20 20 C 1.51672 * 105.02310 * 215.56978 * 19 17 16 21 21 C 1.38496 * 130.31095 * 197.10760 * 20 19 17 22 22 C 1.38105 * 120.21962 * 179.78964 * 21 20 19 23 23 C 1.38254 * 119.92759 * 0.02562 * 22 21 20 24 24 C 1.38100 * 119.93963 * 0.02562 * 23 22 21 25 25 C 1.38223 * 109.83973 * 16.92569 * 20 19 17 26 26 C 1.51369 * 109.75483 * 0.14629 * 25 20 19 27 27 H 1.09011 * 110.29830 * 101.74550 * 26 25 20 28 28 O 1.42894 * 110.30519 * 223.89700 * 26 25 20 29 29 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 30 30 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 31 31 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 34 34 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 35 35 H 0.97004 * 119.99855 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.47066 * 179.97438 * 12 2 1 37 37 H 1.08994 * 109.46974 * 60.00060 * 12 2 1 38 38 H 0.97001 * 120.00384 * 0.02562 * 13 12 2 39 39 H 0.97000 * 119.99549 * 359.97438 * 16 14 13 40 40 H 1.08997 * 110.30299 * 334.35910 * 19 17 16 41 41 H 1.09004 * 110.30158 * 96.50416 * 19 17 16 42 42 H 1.08009 * 119.88935 * 359.80673 * 21 20 19 43 43 H 1.07994 * 120.03605 * 179.97438 * 22 21 20 44 44 H 1.08004 * 120.02864 * 179.97438 * 23 22 21 45 45 H 1.08004 * 119.89281 * 180.02562 * 24 23 22 46 46 H 0.96704 * 114.00346 * 295.75321 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.3447 -2.1615 -4.4124 10 1 2.4871 -0.1402 -5.1120 11 1 3.6307 -1.7565 -3.7121 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 1.8728 -0.4943 3.6694 15 8 2.5719 -1.4830 3.7810 16 7 1.4190 0.1377 4.7699 17 6 1.7684 -0.3660 6.1004 18 1 2.7727 -0.7899 6.1010 19 6 0.7341 -1.4050 6.5828 20 6 0.6190 -1.1801 8.0784 21 6 0.0995 -1.9958 9.0697 22 6 0.1037 -1.5786 10.3863 23 6 0.6275 -0.3425 10.7164 24 6 1.1450 0.4728 9.7292 25 6 1.1429 0.0557 8.4086 26 6 1.6433 0.7495 7.1598 27 1 0.9264 1.5029 6.8328 28 8 2.9178 1.3485 7.4022 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9564 0.8899 35 1 0.7081 1.1609 -3.4844 36 1 3.1301 -0.7216 1.2490 37 1 1.6768 -1.7489 1.2492 38 1 0.9939 0.7579 2.3564 39 1 0.8617 0.9266 4.6809 40 1 -0.2280 -1.2331 6.1001 41 1 1.0873 -2.4150 6.3749 42 1 -0.3100 -2.9616 8.8124 43 1 -0.3025 -2.2169 11.1569 44 1 0.6312 -0.0144 11.7455 45 1 1.5543 1.4382 9.9880 46 1 2.9006 2.0571 8.0600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895302025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:06 Heat of formation + Delta-G solvation = -77.429951 kcal Electronic energy + Delta-G solvation = -26360.636268 eV Core-core repulsion = 22634.933022 eV Total energy + Delta-G solvation = -3725.703246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69316 -40.67861 -38.39186 -37.81749 -36.22405 -35.02595 -33.98288 -32.51387 -31.94318 -29.18759 -27.65249 -27.54307 -27.39095 -26.47695 -23.55353 -22.29297 -21.97760 -21.76157 -20.57703 -19.69100 -18.50457 -17.80521 -17.73152 -16.95125 -16.61635 -16.54000 -16.35078 -15.93258 -15.58108 -15.28300 -14.77387 -14.72088 -14.61155 -14.58585 -14.00450 -13.96353 -13.71521 -13.56174 -13.21503 -13.10939 -13.08342 -12.69610 -12.62693 -12.58139 -12.23309 -12.12810 -12.04020 -11.82158 -11.46762 -11.43877 -11.18016 -11.06574 -10.69101 -10.41893 -10.34461 -9.78718 -9.70738 -9.55307 -8.01227 -6.16458 0.34578 0.44078 1.43226 1.45942 1.54085 1.69146 2.16458 2.46974 2.76486 3.13808 3.22386 3.28132 3.31769 3.73651 3.92898 3.97243 4.13572 4.15824 4.27860 4.42896 4.45731 4.54958 4.61567 4.72476 4.74781 4.79140 4.84356 5.02388 5.04339 5.07970 5.12316 5.15083 5.22122 5.39447 5.42559 5.53300 5.58764 5.61868 5.63244 5.68763 5.69148 6.03397 6.06211 6.17156 6.23554 6.45293 6.79342 6.87606 7.13890 7.50960 7.61468 8.97734 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033711 B = 0.002303 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.388490 B =12155.736612 C =12418.590190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.527 4.527 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.168 3.832 13 N -0.723 5.723 14 C 0.700 3.300 15 O -0.639 6.639 16 N -0.722 5.722 17 C 0.172 3.828 18 H 0.076 0.924 19 C -0.090 4.090 20 C -0.100 4.100 21 C -0.122 4.122 22 C -0.116 4.116 23 C -0.126 4.126 24 C -0.099 4.099 25 C -0.144 4.144 26 C 0.151 3.849 27 H 0.100 0.900 28 O -0.570 6.570 29 H 0.038 0.962 30 H 0.062 0.938 31 H 0.017 0.983 32 H 0.016 0.984 33 H 0.063 0.937 34 H 0.037 0.963 35 H 0.260 0.740 36 H 0.033 0.967 37 H 0.036 0.964 38 H 0.406 0.594 39 H 0.412 0.588 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.130 0.870 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.146 0.854 46 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 3.626 26.848 27.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 C -0.178 4.178 4 C -0.566 4.566 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.043 3.957 13 N -0.378 5.378 14 C 0.400 3.600 15 O -0.521 6.521 16 N -0.379 5.379 17 C 0.066 3.934 18 H 0.094 0.906 19 C -0.128 4.128 20 C -0.101 4.101 21 C -0.140 4.140 22 C -0.134 4.134 23 C -0.143 4.143 24 C -0.117 4.117 25 C -0.145 4.145 26 C 0.092 3.908 27 H 0.118 0.882 28 O -0.378 6.378 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.243 0.757 39 H 0.249 0.751 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.148 0.852 43 H 0.165 0.835 44 H 0.169 0.831 45 H 0.164 0.836 46 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -4.323 2.438 26.317 26.781 hybrid contribution -0.193 0.278 -0.960 1.018 sum -4.516 2.716 25.357 25.899 Atomic orbital electron populations 1.21663 0.96986 0.98678 1.00415 1.18363 0.93354 0.93036 0.90143 1.21662 0.97875 0.97846 1.00394 1.21264 1.31652 1.12122 0.91559 0.93800 1.25447 0.95208 0.95618 1.00935 1.69906 1.37015 1.23250 1.23575 0.85761 0.78634 0.78492 0.79925 1.20473 1.20806 1.20189 1.21128 0.96644 0.94717 0.83179 1.45170 1.55837 1.33107 1.03730 1.16131 0.79977 0.82647 0.81269 1.90868 1.44844 1.29729 1.86621 1.44782 1.56476 1.33260 1.03363 1.21209 0.98771 0.93250 0.80183 0.90571 1.21451 0.99855 0.99820 0.91686 1.20568 0.99191 0.95386 0.94914 1.20914 1.00323 1.00041 0.92725 1.21432 0.99008 0.97055 0.95898 1.21432 0.98257 0.94268 1.00369 1.20872 0.99138 1.01094 0.90576 1.21125 1.01251 0.96540 0.95584 1.21317 0.85705 0.93554 0.90252 0.88238 1.86590 1.29910 1.55919 1.65426 0.94349 0.91875 0.96330 0.96441 0.91860 0.94387 0.93037 0.94809 0.94562 0.75691 0.75065 0.88689 0.91150 0.85237 0.83480 0.83083 0.83638 0.75124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.08 71.99 0.58 -4.71 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 3 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 4 C -0.53 -28.15 8.01 25.60 0.21 -27.95 16 5 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 6 C 0.03 1.46 5.15 84.65 0.44 1.90 16 7 N -0.90 -47.97 9.35 21.45 0.20 -47.77 16 8 Si 0.94 42.95 29.54 68.60 2.03 44.97 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 C 0.17 7.33 4.50 86.38 0.39 7.72 16 13 N -0.72 -25.50 4.96 -478.54 -2.37 -27.88 16 14 C 0.70 25.00 8.57 179.05 1.53 26.53 16 15 O -0.64 -28.77 16.03 -4.01 -0.06 -28.84 16 16 N -0.72 -18.47 5.16 -453.44 -2.34 -20.81 16 17 C 0.17 4.30 3.11 45.90 0.14 4.45 16 18 H 0.08 2.48 7.59 -2.38 -0.02 2.46 16 19 C -0.09 -2.04 6.52 30.61 0.20 -1.84 16 20 C -0.10 -2.00 6.15 -19.50 -0.12 -2.12 16 21 C -0.12 -2.09 10.04 22.30 0.22 -1.86 16 22 C -0.12 -1.54 10.05 22.24 0.22 -1.32 16 23 C -0.13 -1.48 10.05 22.24 0.22 -1.26 16 24 C -0.10 -1.31 10.00 22.30 0.22 -1.08 16 25 C -0.14 -2.54 5.82 -19.59 -0.11 -2.66 16 26 C 0.15 2.73 3.94 30.52 0.12 2.85 16 27 H 0.10 1.32 7.79 -2.38 -0.02 1.30 16 28 O -0.57 -10.71 13.35 -148.98 -1.99 -12.70 16 29 H 0.04 1.40 6.86 -2.39 -0.02 1.39 16 30 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 34 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 35 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 36 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.41 12.13 6.18 -92.71 -0.57 11.56 16 39 H 0.41 7.59 8.41 -92.71 -0.78 6.82 16 40 H 0.09 1.99 8.08 -2.39 -0.02 1.97 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 44 H 0.15 0.94 8.06 -2.91 -0.02 0.91 16 45 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 46 H 0.40 3.42 9.10 -74.05 -0.67 2.75 16 Total: -1.00 -69.18 370.27 -0.72 -69.90 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -1.01 Total: 26.86 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 4.82 Total: -3.74 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -4.51 Total: -96.46 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -2.05 Total: -41.54 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -69.18 -0.72 -69.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895302025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.528 kcal (2) G-P(sol) polarization free energy of solvation -69.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds