Wall clock time and date at job start Tue Mar 31 2020 12:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47646 * 2 1 4 4 C 1.53009 * 109.46792 * 240.00402 * 2 1 3 5 5 N 1.46898 * 109.47650 * 120.00698 * 2 1 3 6 6 C 1.47964 * 110.99682 * 319.83942 * 5 2 1 7 7 C 1.53934 * 86.18029 * 137.58157 * 6 5 2 8 8 C 1.47961 * 110.99790 * 59.19748 * 5 2 1 9 9 H 1.09000 * 113.75941 * 108.10644 * 8 5 2 10 10 C 1.50695 * 113.76057 * 336.73483 * 8 5 2 11 11 O 1.21295 * 119.99696 * 66.06731 * 10 8 5 12 12 N 1.34775 * 120.00396 * 246.06114 * 10 8 5 13 13 C 1.39930 * 120.00066 * 184.24087 * 12 10 8 14 14 C 1.38960 * 120.03545 * 327.62187 * 13 12 10 15 15 C 1.38158 * 120.06297 * 179.71814 * 14 13 12 16 16 C 1.38170 * 120.13843 * 0.55195 * 15 14 13 17 17 C 1.38903 * 120.07123 * 359.72561 * 16 15 14 18 18 O 1.35757 * 120.03254 * 180.02562 * 17 16 15 19 19 C 1.34831 * 116.99966 * 184.42778 * 18 17 16 20 20 H 1.08009 * 120.00018 * 4.10435 * 19 18 17 21 21 C 1.38651 * 120.00193 * 184.11159 * 19 18 17 22 22 N 1.31556 * 119.99777 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00121 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47362 * 89.99369 * 23 21 19 25 25 H 1.48495 * 109.46860 * 209.99776 * 23 21 19 26 26 H 1.48503 * 109.47020 * 329.99563 * 23 21 19 27 27 C 1.38718 * 120.03013 * 147.89070 * 13 12 10 28 28 H 1.09004 * 109.46819 * 346.41428 * 1 2 3 29 29 H 1.08999 * 109.47481 * 106.41815 * 1 2 3 30 30 H 1.09007 * 109.47238 * 226.42403 * 1 2 3 31 31 H 1.08995 * 109.47464 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47287 * 300.00585 * 3 2 1 33 33 H 1.09003 * 109.46485 * 60.00555 * 3 2 1 34 34 H 1.08999 * 109.47086 * 272.93693 * 4 2 1 35 35 H 1.09002 * 109.47101 * 32.93845 * 4 2 1 36 36 H 1.08999 * 109.46925 * 152.93937 * 4 2 1 37 37 H 1.09003 * 113.75729 * 23.26410 * 6 5 2 38 38 H 1.08992 * 113.75779 * 251.89874 * 6 5 2 39 39 H 1.09004 * 113.73698 * 221.92318 * 7 6 5 40 40 H 1.08997 * 113.73430 * 90.63616 * 7 6 5 41 41 H 0.96999 * 120.00033 * 4.24839 * 12 10 8 42 42 H 1.07995 * 119.97183 * 359.97438 * 14 13 12 43 43 H 1.08004 * 119.93553 * 180.27726 * 15 14 13 44 44 H 1.08008 * 119.96328 * 179.69863 * 16 15 14 45 45 H 0.97003 * 119.99666 * 180.02562 * 22 21 19 46 46 H 1.07992 * 120.07072 * 0.02666 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 2.0197 -0.6926 1.1993 6 6 1.2012 -0.3471 2.3825 7 6 1.2736 -1.8424 2.7410 8 6 1.5296 -2.0880 1.2430 9 1 2.3021 -2.8312 1.0456 10 6 0.2737 -2.3158 0.4419 11 8 0.2969 -2.2073 -0.7660 12 7 -0.8751 -2.6402 1.0675 13 6 -2.0192 -2.9385 0.3190 14 6 -2.2368 -2.3081 -0.9000 15 6 -3.3633 -2.6065 -1.6422 16 6 -4.2824 -3.5237 -1.1699 17 6 -4.0734 -4.1530 0.0506 18 8 -4.9767 -5.0545 0.5137 19 6 -4.7610 -5.5599 1.7450 20 1 -3.9379 -5.1954 2.3418 21 6 -5.5959 -6.5475 2.2450 22 7 -6.5987 -6.9912 1.5182 23 14 -5.2975 -7.2472 3.9512 24 1 -6.0518 -6.4504 4.9518 25 1 -5.7566 -8.6587 3.9945 26 1 -3.8469 -7.1886 4.2635 27 6 -2.9401 -3.8599 0.7959 28 1 -0.3633 0.9990 0.2414 29 1 -0.3634 -0.2905 -0.9857 30 1 -0.3634 -0.7084 0.7445 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9562 0.8901 34 1 2.1113 -1.7901 -1.0482 35 1 1.3478 -0.5522 -2.0744 36 1 3.0238 -0.3351 -1.5156 37 1 0.1967 -0.0027 2.1362 38 1 1.7113 0.3006 3.0954 39 1 0.3297 -2.2543 3.0980 40 1 2.1193 -2.1002 3.3786 41 1 -0.9090 -2.6668 2.0365 42 1 -1.5227 -1.5872 -1.2697 43 1 -3.5281 -2.1185 -2.5915 44 1 -5.1644 -3.7512 -1.7502 45 1 -7.1829 -7.6819 1.8682 46 1 -2.7755 -4.3476 1.7453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900237177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:56 Heat of formation + Delta-G solvation = 58.229433 kcal Electronic energy + Delta-G solvation = -27938.907196 eV Core-core repulsion = 24219.086583 eV Total energy + Delta-G solvation = -3719.820613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.56853 -39.36325 -38.21152 -36.46408 -35.47779 -34.01501 -32.27081 -29.61594 -28.87714 -28.10094 -27.53711 -27.42839 -26.20330 -25.31395 -22.70447 -21.88164 -21.20388 -20.19045 -19.13025 -18.02492 -17.58878 -17.03614 -16.25174 -15.90754 -15.65943 -15.45418 -14.89285 -14.59268 -14.33161 -14.17150 -14.03113 -13.77015 -13.58988 -13.11160 -12.98247 -12.67995 -12.61589 -12.38860 -11.96614 -11.85056 -11.71705 -11.49941 -11.42346 -11.37080 -11.06527 -11.00398 -10.93341 -10.87853 -10.70183 -10.50497 -10.45652 -9.78732 -9.58667 -9.46735 -8.85589 -8.79863 -7.76122 -7.19860 -6.48347 -4.08208 1.89169 2.33872 2.70383 3.06556 3.09018 3.10163 3.14335 3.50974 3.92454 4.03963 4.41654 4.52800 4.63520 4.65969 4.81607 4.93213 5.07061 5.10036 5.22987 5.23914 5.32606 5.42307 5.44065 5.50682 5.61646 5.65853 5.68521 5.75480 5.87612 5.90345 5.99303 6.01593 6.10715 6.14771 6.19724 6.22160 6.34720 6.55509 6.62255 6.79924 6.91219 6.94831 7.08012 7.28412 7.38693 7.61172 7.76835 7.95490 8.19199 8.96943 9.67132 10.69704 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019502 B = 0.003510 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.433445 B = 7975.609517 C = 9015.166158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.066 3.934 3 C -0.129 4.129 4 C -0.126 4.126 5 N -0.444 5.444 6 C -0.016 4.016 7 C -0.144 4.144 8 C 0.008 3.992 9 H 0.130 0.870 10 C 0.517 3.483 11 O -0.506 6.506 12 N -0.673 5.673 13 C 0.178 3.822 14 C -0.213 4.213 15 C -0.065 4.065 16 C -0.200 4.200 17 C 0.168 3.832 18 O -0.176 6.176 19 C -0.393 4.393 20 H 0.090 0.910 21 C 0.040 3.960 22 N -0.862 5.862 23 Si 0.940 3.060 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.268 1.268 27 C -0.258 4.258 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.037 0.963 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.404 0.596 42 H 0.132 0.868 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.270 0.730 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.629 12.737 2.146 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.023 4.023 3 C -0.186 4.186 4 C -0.184 4.184 5 N -0.167 5.167 6 C -0.145 4.145 7 C -0.182 4.182 8 C -0.104 4.104 9 H 0.148 0.852 10 C 0.305 3.695 11 O -0.381 6.381 12 N -0.320 5.320 13 C 0.085 3.915 14 C -0.233 4.233 15 C -0.084 4.084 16 C -0.220 4.220 17 C 0.114 3.886 18 O -0.079 6.079 19 C -0.469 4.469 20 H 0.107 0.893 21 C -0.165 4.165 22 N -0.496 5.496 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.202 1.202 26 H -0.193 1.193 27 C -0.280 4.280 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.242 0.758 42 H 0.149 0.851 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.080 0.920 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 16.023 12.681 1.197 20.470 hybrid contribution -0.746 -0.509 1.345 1.620 sum 15.277 12.173 2.542 19.698 Atomic orbital electron populations 1.23672 0.96103 1.01607 1.04174 1.21576 0.93386 0.95256 0.92129 1.21792 1.01409 0.94036 1.01384 1.22149 0.99108 1.01911 0.95200 1.68991 1.44828 1.00035 1.02894 1.24214 0.98738 0.97319 0.94211 1.23475 1.03326 0.96244 0.95150 1.23475 0.95116 0.96121 0.95684 0.85219 1.20120 0.84375 0.76050 0.88991 1.90790 1.84542 1.48742 1.13992 1.43876 1.09281 1.68505 1.10303 1.17433 0.85962 0.95250 0.92850 1.20894 1.00277 1.05677 0.96501 1.20571 0.93198 0.96332 0.98302 1.20264 1.02310 1.02585 0.96826 1.19059 0.88067 0.89385 0.92081 1.84016 1.42271 1.48876 1.32758 1.21266 1.15676 1.20539 0.89441 0.89262 1.25276 0.95347 0.95939 0.99901 1.70036 1.15173 1.27476 1.36964 0.85730 0.78875 0.78499 0.80409 1.19875 1.20223 1.19273 1.20806 0.98071 1.04522 1.04564 0.93478 0.89458 0.90473 0.92070 0.92197 0.93046 0.90088 0.92134 0.94355 0.89786 0.88783 0.90576 0.87764 0.75832 0.85055 0.86733 0.86464 0.91985 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.43 5.91 37.15 0.22 -2.21 16 2 C 0.07 0.74 0.71 -131.60 -0.09 0.65 16 3 C -0.13 -1.24 8.22 37.16 0.31 -0.94 16 4 C -0.13 -1.55 7.55 37.16 0.28 -1.27 16 5 N -0.44 -4.62 5.98 -216.45 -1.30 -5.91 16 6 C -0.02 -0.14 7.16 -2.76 -0.02 -0.16 16 7 C -0.14 -1.14 7.72 -25.80 -0.20 -1.34 16 8 C 0.01 0.09 3.75 -67.81 -0.25 -0.17 16 9 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 10 C 0.52 6.94 3.96 -10.99 -0.04 6.90 16 11 O -0.51 -7.99 8.01 5.54 0.04 -7.94 16 12 N -0.67 -9.47 4.37 -12.84 -0.06 -9.52 16 13 C 0.18 3.24 6.34 -83.72 -0.53 2.71 16 14 C -0.21 -3.88 8.70 -39.34 -0.34 -4.23 16 15 C -0.07 -1.20 10.03 -39.64 -0.40 -1.60 16 16 C -0.20 -4.23 9.99 -39.36 -0.39 -4.63 16 17 C 0.17 4.01 6.65 -39.14 -0.26 3.75 16 18 O -0.18 -4.94 9.76 0.02 0.00 -4.94 16 19 C -0.39 -10.73 9.46 30.89 0.29 -10.43 16 20 H 0.09 2.23 5.24 -52.48 -0.28 1.95 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -24.96 13.67 55.48 0.76 -24.20 16 23 Si 0.94 20.00 29.55 -169.99 -5.02 14.98 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 27 C -0.26 -5.43 9.06 -39.21 -0.36 -5.78 16 28 H 0.05 0.53 7.65 -51.93 -0.40 0.14 16 29 H 0.09 1.24 4.39 -51.93 -0.23 1.01 16 30 H 0.08 0.97 2.38 -58.69 -0.14 0.83 16 31 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.47 7.89 -51.93 -0.41 0.06 16 34 H 0.08 1.10 5.08 -51.93 -0.26 0.84 16 35 H 0.06 0.79 7.18 -51.93 -0.37 0.42 16 36 H 0.04 0.43 7.86 -51.93 -0.41 0.02 16 37 H 0.08 0.79 5.40 -51.93 -0.28 0.51 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.55 5.91 -51.93 -0.31 0.25 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.40 4.67 6.37 -40.82 -0.26 4.41 16 42 H 0.13 2.28 3.97 -52.49 -0.21 2.07 16 43 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 44 H 0.12 2.39 8.06 -52.48 -0.42 1.96 16 45 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.13 2.66 5.67 -52.49 -0.30 2.36 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -30.92 343.46 -8.22 -39.15 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -5.94 Total: 10.99 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -1.89 Total: -17.78 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: -0.59 Total: -39.64 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.04 Total: -12.88 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.92 -8.22 -39.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900237177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.377 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds