Wall clock time and date at job start Tue Mar 31 2020 12:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47646 * 2 1 4 4 C 1.53009 * 109.46792 * 240.00402 * 2 1 3 5 5 N 1.46898 * 109.47650 * 120.00698 * 2 1 3 6 6 C 1.47964 * 110.99682 * 319.83942 * 5 2 1 7 7 C 1.53934 * 86.18029 * 137.58157 * 6 5 2 8 8 C 1.47961 * 110.99790 * 59.19748 * 5 2 1 9 9 H 1.09000 * 113.75941 * 108.10644 * 8 5 2 10 10 C 1.50695 * 113.76057 * 336.73483 * 8 5 2 11 11 O 1.21295 * 119.99696 * 66.06731 * 10 8 5 12 12 N 1.34775 * 120.00396 * 246.06114 * 10 8 5 13 13 C 1.39930 * 120.00066 * 184.24087 * 12 10 8 14 14 C 1.38960 * 120.03545 * 327.62187 * 13 12 10 15 15 C 1.38158 * 120.06297 * 179.71814 * 14 13 12 16 16 C 1.38170 * 120.13843 * 0.55195 * 15 14 13 17 17 C 1.38903 * 120.07123 * 359.72561 * 16 15 14 18 18 O 1.35757 * 120.03254 * 180.02562 * 17 16 15 19 19 C 1.34831 * 116.99966 * 184.42778 * 18 17 16 20 20 H 1.08009 * 120.00018 * 4.10435 * 19 18 17 21 21 C 1.38651 * 120.00193 * 184.11159 * 19 18 17 22 22 N 1.31556 * 119.99777 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00121 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47362 * 89.99369 * 23 21 19 25 25 H 1.48495 * 109.46860 * 209.99776 * 23 21 19 26 26 H 1.48503 * 109.47020 * 329.99563 * 23 21 19 27 27 C 1.38718 * 120.03013 * 147.89070 * 13 12 10 28 28 H 1.09004 * 109.46819 * 346.41428 * 1 2 3 29 29 H 1.08999 * 109.47481 * 106.41815 * 1 2 3 30 30 H 1.09007 * 109.47238 * 226.42403 * 1 2 3 31 31 H 1.08995 * 109.47464 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47287 * 300.00585 * 3 2 1 33 33 H 1.09003 * 109.46485 * 60.00555 * 3 2 1 34 34 H 1.08999 * 109.47086 * 272.93693 * 4 2 1 35 35 H 1.09002 * 109.47101 * 32.93845 * 4 2 1 36 36 H 1.08999 * 109.46925 * 152.93937 * 4 2 1 37 37 H 1.09003 * 113.75729 * 23.26410 * 6 5 2 38 38 H 1.08992 * 113.75779 * 251.89874 * 6 5 2 39 39 H 1.09004 * 113.73698 * 221.92318 * 7 6 5 40 40 H 1.08997 * 113.73430 * 90.63616 * 7 6 5 41 41 H 0.96999 * 120.00033 * 4.24839 * 12 10 8 42 42 H 1.07995 * 119.97183 * 359.97438 * 14 13 12 43 43 H 1.08004 * 119.93553 * 180.27726 * 15 14 13 44 44 H 1.08008 * 119.96328 * 179.69863 * 16 15 14 45 45 H 0.97003 * 119.99666 * 180.02562 * 22 21 19 46 46 H 1.07992 * 120.07072 * 0.02666 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 2.0197 -0.6926 1.1993 6 6 1.2012 -0.3471 2.3825 7 6 1.2736 -1.8424 2.7410 8 6 1.5296 -2.0880 1.2430 9 1 2.3021 -2.8312 1.0456 10 6 0.2737 -2.3158 0.4419 11 8 0.2969 -2.2073 -0.7660 12 7 -0.8751 -2.6402 1.0675 13 6 -2.0192 -2.9385 0.3190 14 6 -2.2368 -2.3081 -0.9000 15 6 -3.3633 -2.6065 -1.6422 16 6 -4.2824 -3.5237 -1.1699 17 6 -4.0734 -4.1530 0.0506 18 8 -4.9767 -5.0545 0.5137 19 6 -4.7610 -5.5599 1.7450 20 1 -3.9379 -5.1954 2.3418 21 6 -5.5959 -6.5475 2.2450 22 7 -6.5987 -6.9912 1.5182 23 14 -5.2975 -7.2472 3.9512 24 1 -6.0518 -6.4504 4.9518 25 1 -5.7566 -8.6587 3.9945 26 1 -3.8469 -7.1886 4.2635 27 6 -2.9401 -3.8599 0.7959 28 1 -0.3633 0.9990 0.2414 29 1 -0.3634 -0.2905 -0.9857 30 1 -0.3634 -0.7084 0.7445 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9562 0.8901 34 1 2.1113 -1.7901 -1.0482 35 1 1.3478 -0.5522 -2.0744 36 1 3.0238 -0.3351 -1.5156 37 1 0.1967 -0.0027 2.1362 38 1 1.7113 0.3006 3.0954 39 1 0.3297 -2.2543 3.0980 40 1 2.1193 -2.1002 3.3786 41 1 -0.9090 -2.6668 2.0365 42 1 -1.5227 -1.5872 -1.2697 43 1 -3.5281 -2.1185 -2.5915 44 1 -5.1644 -3.7512 -1.7502 45 1 -7.1829 -7.6819 1.8682 46 1 -2.7755 -4.3476 1.7453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900237177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:55 Heat of formation + Delta-G solvation = 37.043126 kcal Electronic energy + Delta-G solvation = -27939.825903 eV Core-core repulsion = 24219.086583 eV Total energy + Delta-G solvation = -3720.739321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.53473 -40.89469 -39.56145 -37.98733 -36.52629 -35.22580 -34.21879 -31.13304 -30.41067 -29.08058 -28.45894 -28.23182 -27.41646 -26.98163 -23.88588 -23.51631 -22.38879 -21.18926 -20.39361 -19.59403 -19.12037 -18.15428 -17.33257 -17.12844 -16.91371 -16.69484 -16.27593 -15.88744 -15.73509 -15.55681 -15.43968 -15.09588 -14.81234 -14.48301 -14.22499 -13.99472 -13.63923 -13.46123 -13.37521 -13.12165 -12.87718 -12.80137 -12.59366 -12.55143 -12.33272 -12.16735 -12.12287 -11.96302 -11.95305 -11.63958 -11.43208 -11.38614 -11.15710 -10.75377 -10.56335 -9.76203 -9.32305 -8.87064 -8.46258 -6.15092 0.38604 0.70407 1.36475 1.44720 1.51932 1.54019 1.91609 2.18317 2.71953 2.83969 3.17014 3.31294 3.48165 3.50867 3.79248 3.82434 3.94395 4.11635 4.13727 4.32820 4.33427 4.42290 4.45993 4.52139 4.57291 4.64890 4.67288 4.76345 4.80535 4.83866 4.90734 4.99040 5.05012 5.08201 5.10831 5.12786 5.20544 5.23672 5.34738 5.43458 5.45559 5.61445 5.67351 5.71059 5.96829 6.01725 6.18372 6.39894 6.98115 7.05026 7.77957 8.76931 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019502 B = 0.003510 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.433445 B = 7975.609517 C = 9015.166158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.066 3.934 3 C -0.125 4.125 4 C -0.122 4.122 5 N -0.444 5.444 6 C -0.018 4.018 7 C -0.131 4.131 8 C 0.006 3.994 9 H 0.139 0.861 10 C 0.517 3.483 11 O -0.529 6.529 12 N -0.666 5.666 13 C 0.189 3.811 14 C -0.205 4.205 15 C -0.056 4.056 16 C -0.216 4.216 17 C 0.135 3.865 18 O -0.228 6.228 19 C -0.413 4.413 20 H 0.105 0.895 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.262 1.262 25 H -0.275 1.275 26 H -0.249 1.249 27 C -0.262 4.262 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.418 0.582 42 H 0.147 0.853 43 H 0.150 0.850 44 H 0.115 0.885 45 H 0.272 0.728 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.405 14.329 3.904 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.024 4.024 3 C -0.182 4.182 4 C -0.179 4.179 5 N -0.168 5.168 6 C -0.146 4.146 7 C -0.169 4.169 8 C -0.107 4.107 9 H 0.156 0.844 10 C 0.307 3.693 11 O -0.405 6.405 12 N -0.314 5.314 13 C 0.095 3.905 14 C -0.226 4.226 15 C -0.074 4.074 16 C -0.236 4.236 17 C 0.083 3.917 18 O -0.134 6.134 19 C -0.489 4.489 20 H 0.122 0.878 21 C -0.220 4.220 22 N -0.559 5.559 23 Si 0.837 3.163 24 H -0.187 1.187 25 H -0.200 1.200 26 H -0.173 1.173 27 C -0.283 4.283 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.130 0.870 39 H 0.103 0.897 40 H 0.144 0.856 41 H 0.258 0.742 42 H 0.164 0.836 43 H 0.167 0.833 44 H 0.133 0.867 45 H 0.081 0.919 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.859 14.326 2.958 23.867 hybrid contribution -1.413 -0.767 0.608 1.719 sum 17.446 13.559 3.566 22.381 Atomic orbital electron populations 1.23618 0.97035 1.01877 1.02707 1.21556 0.92575 0.96168 0.92070 1.21759 1.01591 0.92956 1.01931 1.22062 0.99229 1.01187 0.95436 1.69029 1.44964 0.99762 1.03005 1.24295 0.98321 0.98320 0.93657 1.23514 1.04636 0.95358 0.93405 1.23500 0.93394 0.96587 0.97181 0.84380 1.20744 0.84768 0.74795 0.88983 1.90789 1.84919 1.49474 1.15337 1.43877 1.08305 1.68355 1.10902 1.17438 0.86469 0.93695 0.92937 1.21250 1.00037 1.05051 0.96230 1.20951 0.92134 0.94956 0.99383 1.20471 1.03251 1.03464 0.96416 1.19574 0.88907 0.89647 0.93536 1.83984 1.44638 1.51133 1.33645 1.21821 1.16305 1.20896 0.89878 0.87820 1.26605 0.94778 0.96031 1.04634 1.70192 1.17029 1.29021 1.39674 0.84591 0.79791 0.77459 0.74416 1.18735 1.19962 1.17254 1.20841 0.97944 1.05135 1.04418 0.92693 0.91545 0.90707 0.91721 0.91987 0.92224 0.91476 0.93538 0.93532 0.90478 0.87037 0.89748 0.85639 0.74210 0.83600 0.83274 0.86654 0.91868 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.38 5.91 71.98 0.43 -3.95 16 2 C 0.07 1.33 0.71 3.53 0.00 1.33 16 3 C -0.12 -2.09 8.22 71.98 0.59 -1.50 16 4 C -0.12 -2.82 7.55 71.99 0.54 -2.27 16 5 N -0.44 -7.88 5.98 -838.72 -5.02 -12.90 16 6 C -0.02 -0.25 7.16 86.40 0.62 0.37 16 7 C -0.13 -1.58 7.72 31.24 0.24 -1.34 16 8 C 0.01 0.10 3.75 44.27 0.17 0.27 16 9 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 10 C 0.52 12.82 3.96 87.66 0.35 13.16 16 11 O -0.53 -15.93 8.01 -3.08 -0.02 -15.95 16 12 N -0.67 -17.39 4.37 -312.91 -1.37 -18.75 16 13 C 0.19 6.66 6.34 38.14 0.24 6.90 16 14 C -0.21 -7.18 8.70 22.42 0.20 -6.98 16 15 C -0.06 -1.99 10.03 22.23 0.22 -1.77 16 16 C -0.22 -9.34 9.99 22.41 0.22 -9.11 16 17 C 0.13 6.63 6.65 22.56 0.15 6.78 16 18 O -0.23 -13.48 9.76 -22.83 -0.22 -13.71 16 19 C -0.41 -23.35 9.46 67.92 0.64 -22.71 16 20 H 0.10 5.27 5.24 -2.91 -0.02 5.25 16 21 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 22 N -0.92 -55.86 13.67 21.61 0.30 -55.57 16 23 Si 1.02 41.36 29.55 68.60 2.03 43.38 16 24 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 26 H -0.25 -9.19 7.11 99.48 0.71 -8.49 16 27 C -0.26 -11.05 9.06 22.51 0.20 -10.85 16 28 H 0.05 1.13 7.65 -2.38 -0.02 1.11 16 29 H 0.07 1.79 4.39 -2.39 -0.01 1.78 16 30 H 0.08 1.70 2.38 -8.74 -0.02 1.68 16 31 H 0.06 1.04 8.11 -2.39 -0.02 1.03 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 0.90 7.89 -2.39 -0.02 0.88 16 34 H 0.07 1.74 5.08 -2.39 -0.01 1.73 16 35 H 0.05 1.18 7.18 -2.39 -0.02 1.16 16 36 H 0.05 0.97 7.86 -2.39 -0.02 0.95 16 37 H 0.08 1.21 5.40 -2.39 -0.01 1.20 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 0.90 5.91 -2.39 -0.01 0.89 16 40 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.42 8.58 6.37 -92.71 -0.59 7.99 16 42 H 0.15 4.79 3.97 -2.91 -0.01 4.78 16 43 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 44 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 45 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 46 H 0.13 5.33 5.67 -2.91 -0.02 5.31 16 Total: -1.00 -70.71 343.46 1.40 -69.31 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: 0.43 Total: 36.66 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 5.28 Total: -32.48 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -6.09 Total: -87.22 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.25 Total: -29.66 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Total: -70.71 1.40 -69.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900237177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.357 kcal (2) G-P(sol) polarization free energy of solvation -70.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds