Wall clock time and date at job start Tue Mar 31 2020 12:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47294 * 2 1 4 4 C 1.53004 * 109.47645 * 119.99984 * 2 1 3 5 5 H 1.08998 * 109.47768 * 60.02035 * 4 2 1 6 6 C 1.53087 * 109.48500 * 180.02562 * 4 2 1 7 7 C 1.53176 * 109.16363 * 177.59038 * 6 4 2 8 8 H 1.08996 * 109.61270 * 62.93470 * 7 6 4 9 9 C 1.50701 * 109.54119 * 183.15482 * 7 6 4 10 10 O 1.21268 * 120.00140 * 30.07036 * 9 7 6 11 11 N 1.34782 * 119.99789 * 210.06851 * 9 7 6 12 12 C 1.37207 * 120.00147 * 3.81876 * 11 9 7 13 13 H 1.07999 * 120.00018 * 48.34365 * 12 11 9 14 14 C 1.38892 * 120.00363 * 228.34424 * 12 11 9 15 15 N 1.31414 * 119.99458 * 11.01701 * 14 12 11 16 16 Si 1.86798 * 120.00178 * 191.00990 * 14 12 11 17 17 H 1.48506 * 109.46890 * 90.00472 * 16 14 12 18 18 H 1.48504 * 109.47205 * 210.00119 * 16 14 12 19 19 H 1.48489 * 109.47486 * 330.00168 * 16 14 12 20 20 C 1.39430 * 119.99797 * 183.81586 * 11 9 7 21 21 C 1.39067 * 119.69491 * 192.04474 * 20 11 9 22 22 C 1.38376 * 119.09810 * 180.23039 * 21 20 11 23 23 C 1.38831 * 118.48943 * 359.51590 * 22 21 20 24 24 C 1.38143 * 119.31200 * 0.48854 * 23 22 21 25 25 N 1.31880 * 120.85212 * 359.74704 * 24 23 22 26 26 C 1.53174 * 109.03901 * 303.02209 * 7 6 4 27 27 C 1.53093 * 109.16280 * 56.98035 * 26 7 6 28 28 O 1.42902 * 109.47745 * 300.00249 * 4 2 1 29 29 H 1.09005 * 109.47036 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46842 * 299.99957 * 1 2 3 31 31 H 1.08998 * 109.47177 * 59.99730 * 1 2 3 32 32 H 1.09005 * 109.47331 * 239.99911 * 2 1 3 33 33 H 1.08997 * 109.47678 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47228 * 300.00238 * 3 2 1 35 35 H 1.09002 * 109.47141 * 60.00226 * 3 2 1 36 36 H 1.09006 * 109.51778 * 57.68542 * 6 4 2 37 37 H 1.08996 * 109.52383 * 297.50128 * 6 4 2 38 38 H 0.97004 * 119.99776 * 184.83864 * 15 14 12 39 39 H 1.08002 * 120.45171 * 359.96231 * 21 20 11 40 40 H 1.08001 * 120.75451 * 179.72569 * 22 21 20 41 41 H 1.07998 * 120.34087 * 180.24300 * 23 22 21 42 42 H 1.08001 * 119.57186 * 179.77397 * 24 23 22 43 43 H 1.08996 * 109.52341 * 176.88383 * 26 7 6 44 44 H 1.08998 * 109.52115 * 297.07389 * 26 7 6 45 45 H 1.09004 * 109.48124 * 62.37276 * 27 26 7 46 46 H 1.08996 * 109.48141 * 182.39762 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6772 -1.7490 1.2492 6 6 3.5710 -0.7208 1.2498 7 6 4.0736 -1.3910 2.5322 8 1 3.7527 -2.4324 2.5507 9 6 5.5785 -1.3262 2.5783 10 8 6.1621 -0.4031 2.0512 11 7 6.2757 -2.2942 3.2055 12 6 5.6215 -3.3784 3.7338 13 1 4.8951 -3.9129 3.1397 14 6 5.8933 -3.7885 5.0326 15 7 6.6063 -3.0227 5.8278 16 14 5.2454 -5.4285 5.6492 17 1 6.2435 -6.4919 5.3693 18 1 5.0057 -5.3474 7.1125 19 1 3.9721 -5.7499 4.9562 20 6 7.6619 -2.1939 3.3175 21 6 8.4010 -3.2957 3.7342 22 6 9.7755 -3.1810 3.8455 23 6 10.3667 -1.9664 3.5253 24 6 9.5708 -0.9134 3.1179 25 7 8.2624 -1.0507 3.0258 26 6 3.4916 -0.6539 3.7422 27 6 1.9638 -0.6570 3.6455 28 8 1.5639 -0.0478 2.4162 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.9349 0.3059 1.2085 37 1 3.9357 -1.2725 0.3834 38 1 6.8556 -3.3389 6.7103 39 1 7.9084 -4.2271 3.9718 40 1 10.3750 -4.0183 4.1709 41 1 11.4374 -1.8449 3.5978 42 1 10.0260 0.0345 2.8713 43 1 3.7996 -1.1578 4.6584 44 1 3.8540 0.3741 3.7514 45 1 1.5996 -1.6839 3.6771 46 1 1.5454 -0.0970 4.4818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905998149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:30 Heat of formation + Delta-G solvation = -60.950847 kcal Electronic energy + Delta-G solvation = -28081.151860 eV Core-core repulsion = 24356.163202 eV Total energy + Delta-G solvation = -3724.988658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74863 -40.66771 -39.35469 -36.90924 -36.13041 -34.55039 -33.88884 -32.81145 -31.00652 -30.90917 -28.01310 -27.23665 -26.83366 -24.67247 -24.22941 -23.75658 -22.11706 -20.82778 -20.69192 -19.49179 -18.16846 -17.45026 -17.18358 -16.84473 -16.70898 -16.40487 -16.09554 -15.82156 -15.68288 -15.30710 -15.07356 -14.95469 -14.62555 -14.36704 -14.23294 -13.75451 -13.67218 -13.52005 -13.26487 -13.11680 -12.97555 -12.83939 -12.64388 -12.46589 -12.42506 -12.13531 -11.99734 -11.72431 -11.55270 -11.46411 -11.25458 -11.10079 -10.78715 -10.68009 -10.46861 -10.36627 -9.70175 -8.88629 -8.24341 -6.37124 0.51002 0.72112 1.43105 1.46701 1.57567 2.00291 2.23898 2.64507 2.87379 2.92299 3.42236 3.68484 3.80110 3.86017 3.93638 4.06776 4.13037 4.18306 4.19851 4.31510 4.43766 4.47308 4.52569 4.56170 4.61720 4.73027 4.74872 4.79829 4.83341 4.89090 4.93415 5.03606 5.10599 5.11580 5.12827 5.18466 5.25197 5.32321 5.36320 5.39981 5.52704 5.54318 5.57865 5.86863 6.12617 6.33099 6.39089 7.00130 7.15201 7.52222 7.98421 8.65878 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014181 B = 0.004713 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.025006 B = 5939.237629 C = 7375.922295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 C -0.144 4.144 4 C 0.101 3.899 5 H 0.070 0.930 6 C -0.127 4.127 7 C -0.083 4.083 8 H 0.100 0.900 9 C 0.482 3.518 10 O -0.564 6.564 11 N -0.400 5.400 12 C -0.372 4.372 13 H 0.106 0.894 14 C 0.023 3.977 15 N -0.878 5.878 16 Si 0.979 3.021 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.251 1.251 20 C 0.358 3.642 21 C -0.172 4.172 22 C -0.073 4.073 23 C -0.219 4.219 24 C 0.091 3.909 25 N -0.539 5.539 26 C -0.126 4.126 27 C 0.075 3.925 28 O -0.382 6.382 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.040 0.960 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.274 0.726 39 H 0.123 0.877 40 H 0.155 0.845 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.064 0.936 44 H 0.044 0.956 45 H 0.067 0.933 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.829 -1.292 -5.145 8.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 C -0.201 4.201 4 C 0.043 3.957 5 H 0.088 0.912 6 C -0.165 4.165 7 C -0.104 4.104 8 H 0.118 0.882 9 C 0.273 3.727 10 O -0.442 6.442 11 N -0.112 5.112 12 C -0.499 4.499 13 H 0.124 0.876 14 C -0.184 4.184 15 N -0.511 5.511 16 Si 0.801 3.199 17 H -0.192 1.192 18 H -0.210 1.210 19 H -0.174 1.174 20 C 0.129 3.871 21 C -0.196 4.196 22 C -0.099 4.099 23 C -0.241 4.241 24 C -0.067 4.067 25 N -0.255 5.255 26 C -0.164 4.164 27 C -0.002 4.002 28 O -0.301 6.301 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.141 0.859 40 H 0.172 0.828 41 H 0.179 0.821 42 H 0.181 0.819 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.085 0.915 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.269 0.106 -5.495 9.113 hybrid contribution 1.073 -1.473 1.166 2.164 sum -6.197 -1.368 -4.328 7.681 Atomic orbital electron populations 1.21716 0.93338 1.02173 1.02176 1.21186 0.97383 0.96559 0.95292 1.21795 1.00234 0.96122 1.01974 1.22190 0.90731 0.96330 0.86455 0.91243 1.22109 0.97189 1.01296 0.95888 1.21104 0.89909 1.02186 0.97242 0.88217 1.21662 0.91109 0.80817 0.79098 1.90581 1.72348 1.34209 1.47107 1.41523 1.01696 1.19966 1.48027 1.19639 1.25507 1.08108 0.96604 0.87649 1.26295 0.95778 1.01577 0.94716 1.70118 1.35832 1.36406 1.08780 0.85134 0.79825 0.77547 0.77366 1.19234 1.21029 1.17392 1.19129 0.86227 0.89332 0.92408 1.21490 0.94591 0.99090 1.04448 1.21646 0.93451 0.98711 0.96094 1.22090 1.01993 0.94046 1.05962 1.22898 0.88202 0.99804 0.95786 1.67498 1.13166 1.24973 1.19854 1.21879 0.98089 0.99182 0.97258 1.22565 0.91206 0.99305 0.87127 1.87860 1.74047 1.54482 1.13679 0.92168 0.92768 0.91508 0.89128 0.94088 0.91359 0.92989 0.91909 0.91396 0.91670 0.85918 0.82760 0.82106 0.81897 0.91756 0.93725 0.91487 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.05 71.98 0.65 -1.95 16 2 C -0.09 -1.97 2.81 -10.79 -0.03 -2.00 16 3 C -0.14 -3.55 8.70 71.98 0.63 -2.92 16 4 C 0.10 2.78 2.38 30.62 0.07 2.85 16 5 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 6 C -0.13 -4.41 4.07 30.68 0.12 -4.28 16 7 C -0.08 -3.34 2.07 -11.42 -0.02 -3.37 16 8 H 0.10 3.83 6.40 -2.39 -0.02 3.81 16 9 C 0.48 24.60 6.64 87.66 0.58 25.18 16 10 O -0.56 -31.92 14.49 -2.99 -0.04 -31.96 16 11 N -0.40 -21.02 2.69 -464.38 -1.25 -22.26 16 12 C -0.37 -18.04 7.46 84.01 0.63 -17.41 16 13 H 0.11 4.74 6.91 -2.91 -0.02 4.72 16 14 C 0.02 1.08 3.62 84.91 0.31 1.39 16 15 N -0.88 -45.59 11.60 21.65 0.25 -45.34 16 16 Si 0.98 36.44 29.57 68.60 2.03 38.47 16 17 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 18 H -0.28 -10.74 7.11 99.48 0.71 -10.04 16 19 H -0.25 -8.67 7.11 99.48 0.71 -7.97 16 20 C 0.36 18.99 6.41 132.91 0.85 19.84 16 21 C -0.17 -8.10 7.81 22.50 0.18 -7.93 16 22 C -0.07 -2.80 10.17 22.44 0.23 -2.57 16 23 C -0.22 -7.86 10.11 22.39 0.23 -7.63 16 24 C 0.09 3.87 11.18 84.66 0.95 4.82 16 25 N -0.54 -28.49 8.02 -192.96 -1.55 -30.03 16 26 C -0.13 -4.77 5.41 30.68 0.17 -4.61 16 27 C 0.07 2.15 6.84 72.01 0.49 2.64 16 28 O -0.38 -11.24 9.06 -148.98 -1.35 -12.59 16 29 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.05 1.14 7.68 -2.39 -0.02 1.12 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.04 1.16 6.38 -2.39 -0.02 1.14 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.05 1.38 7.68 -2.39 -0.02 1.36 16 36 H 0.06 2.47 5.93 -2.38 -0.01 2.45 16 37 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.27 13.46 8.32 -92.71 -0.77 12.69 16 39 H 0.12 5.84 6.02 -2.91 -0.02 5.82 16 40 H 0.15 4.61 8.06 -2.91 -0.02 4.59 16 41 H 0.16 4.21 8.06 -2.91 -0.02 4.19 16 42 H 0.16 5.76 8.06 -2.91 -0.02 5.74 16 43 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -67.85 362.36 5.08 -62.77 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: 0.97 Total: 38.91 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 6.02 Total: 2.04 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -2.54 Total: -97.64 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.39 Total: -44.55 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Total: -67.85 5.08 -62.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905998149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.819 kcal (2) G-P(sol) polarization free energy of solvation -67.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds