Wall clock time and date at job start Tue Mar 31 2020 13:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47218 * 2 1 4 4 N 1.46495 * 109.47382 * 239.99613 * 2 1 3 5 5 C 1.39678 * 119.99914 * 180.76521 * 4 2 1 6 6 C 1.38905 * 120.07321 * 7.14143 * 5 4 2 7 7 C 1.38107 * 119.91965 * 179.76770 * 6 5 4 8 8 C 1.38282 * 120.07778 * 0.50703 * 7 6 5 9 9 C 1.38286 * 120.14906 * 359.74750 * 8 7 6 10 10 C 1.38106 * 120.07518 * 359.97438 * 9 8 7 11 11 C 1.50702 * 109.46719 * 119.99957 * 2 1 3 12 12 O 1.21286 * 119.99822 * 262.25531 * 11 2 1 13 13 N 1.34773 * 120.00519 * 82.25230 * 11 2 1 14 14 C 1.47026 * 125.64291 * 355.01528 * 13 11 2 15 15 C 1.54337 * 107.26199 * 178.84854 * 14 13 11 16 16 C 1.55154 * 103.02153 * 338.14073 * 15 14 13 17 17 O 1.42900 * 111.03520 * 277.21744 * 16 15 14 18 18 C 1.50700 * 111.00513 * 153.38524 * 16 15 14 19 19 H 1.07996 * 119.99851 * 247.80869 * 18 16 15 20 20 C 1.37879 * 120.00013 * 67.79844 * 18 16 15 21 21 N 1.31513 * 119.99937 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 119.99718 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47380 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47330 * 120.00607 * 22 20 18 25 25 H 1.48510 * 109.46886 * 240.00201 * 22 20 18 26 26 C 1.47426 * 125.65415 * 175.32210 * 13 11 2 27 27 H 1.09000 * 109.47296 * 304.87250 * 1 2 3 28 28 H 1.09006 * 109.46991 * 64.87033 * 1 2 3 29 29 H 1.08994 * 109.47543 * 184.86764 * 1 2 3 30 30 H 1.09003 * 109.47325 * 174.61127 * 3 2 1 31 31 H 1.09000 * 109.47393 * 294.61345 * 3 2 1 32 32 H 1.09010 * 109.47221 * 54.61319 * 3 2 1 33 33 H 0.97005 * 119.99801 * 0.76502 * 4 2 1 34 34 H 1.08003 * 120.04106 * 0.02562 * 6 5 4 35 35 H 1.08004 * 119.95822 * 180.25590 * 7 6 5 36 36 H 1.07995 * 119.92843 * 179.71725 * 8 7 6 37 37 H 1.07997 * 119.96680 * 179.97438 * 9 8 7 38 38 H 1.08001 * 120.03961 * 180.02562 * 10 9 8 39 39 H 1.08997 * 109.88025 * 298.39154 * 14 13 11 40 40 H 1.08999 * 109.88383 * 59.55875 * 14 13 11 41 41 H 1.09005 * 110.84542 * 219.67104 * 15 14 13 42 42 H 1.08996 * 110.67030 * 96.52592 * 15 14 13 43 43 H 0.96695 * 114.00601 * 292.21647 * 17 16 15 44 44 H 0.97002 * 119.99549 * 179.97438 * 21 20 18 45 45 H 1.08997 * 110.36133 * 322.93247 * 26 13 11 46 46 H 1.08996 * 110.36804 * 85.14275 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 3.3916 -0.8323 -1.4090 6 6 4.2918 -0.4531 -0.4214 7 6 5.6487 -0.5989 -0.6334 8 6 6.1118 -1.1120 -1.8311 9 6 5.2185 -1.4855 -2.8184 10 6 3.8601 -1.3477 -2.6108 11 6 2.0322 -0.7104 1.2305 12 8 2.3678 -0.0713 2.2052 13 7 2.1085 -2.0559 1.2480 14 6 1.6408 -2.9545 0.1824 15 6 1.9605 -4.3974 0.6270 16 6 3.0937 -4.1995 1.6682 17 8 4.3630 -4.0652 1.0256 18 6 3.1136 -5.3285 2.6662 19 1 2.8506 -5.1426 3.6970 20 6 3.4674 -6.5987 2.2632 21 7 3.7880 -6.8249 1.0079 22 14 3.4913 -7.9982 3.5001 23 1 3.0938 -7.4852 4.8358 24 1 2.5393 -9.0542 3.0714 25 1 4.8607 -8.5678 3.5767 26 6 2.6689 -2.8707 2.3414 27 1 -0.3634 0.5876 0.8431 28 1 -0.3633 0.4364 -0.9305 29 1 -0.3634 -1.0239 0.0872 30 1 3.1258 1.4440 0.0965 31 1 1.7576 1.9277 -0.9343 32 1 1.6000 1.9834 0.8379 33 1 1.3881 -1.0496 -1.8402 34 1 3.9310 -0.0485 0.5127 35 1 6.3491 -0.3081 0.1356 36 1 7.1735 -1.2207 -1.9961 37 1 5.5834 -1.8855 -3.7529 38 1 3.1629 -1.6400 -3.3821 39 1 0.5662 -2.8368 0.0435 40 1 2.1637 -2.7306 -0.7474 41 1 2.3105 -4.9943 -0.2153 42 1 1.0884 -4.8597 1.0894 43 1 4.6706 -4.8718 0.5900 44 1 4.0372 -7.7185 0.7246 45 1 3.5344 -2.3737 2.7796 46 1 1.9119 -3.0547 3.1037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911526565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:02 Heat of formation + Delta-G solvation = -38.531767 kcal Electronic energy + Delta-G solvation = -29025.546988 eV Core-core repulsion = 25301.530494 eV Total energy + Delta-G solvation = -3724.016494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.60863 -38.53243 -37.40204 -36.00393 -34.21690 -32.12626 -32.10264 -30.52887 -29.76322 -28.42519 -28.00943 -27.18645 -25.42035 -23.43042 -22.15441 -21.79979 -20.98765 -19.62055 -18.75357 -17.49613 -17.08928 -16.69502 -15.81565 -15.33002 -15.21128 -14.96285 -14.92772 -14.17399 -14.02259 -13.69960 -13.44497 -13.26021 -12.87638 -12.83216 -12.63978 -12.36202 -12.30738 -12.10168 -12.01003 -11.72377 -11.64288 -11.42834 -11.29671 -11.29410 -10.94665 -10.89479 -10.59912 -10.45698 -10.44149 -10.18897 -9.95075 -9.38930 -9.15634 -8.66170 -8.51576 -8.14451 -7.91633 -7.15802 -6.28701 -4.36324 1.82639 1.96753 2.90702 3.18015 3.27243 3.31346 3.47323 3.62960 4.26142 4.27414 4.70782 4.82076 4.95054 5.03078 5.24108 5.31443 5.42761 5.53376 5.56194 5.61996 5.68499 5.72083 5.80560 5.82750 5.85265 5.96188 5.98280 6.06444 6.12935 6.27373 6.35297 6.35929 6.46810 6.62217 6.68733 6.83071 6.91479 6.98378 7.02701 7.13080 7.32851 7.36111 7.54105 7.74973 7.86198 8.01487 8.17827 8.61348 8.66907 9.32968 9.54128 10.78646 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014692 B = 0.005167 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.328099 B = 5417.356891 C = 6375.528713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.166 3.834 3 C -0.151 4.151 4 N -0.739 5.739 5 C 0.217 3.783 6 C -0.181 4.181 7 C -0.067 4.067 8 C -0.172 4.172 9 C -0.078 4.078 10 C -0.191 4.191 11 C 0.518 3.482 12 O -0.559 6.559 13 N -0.589 5.589 14 C 0.099 3.901 15 C -0.140 4.140 16 C 0.253 3.747 17 O -0.577 6.577 18 C -0.534 4.534 19 H 0.064 0.936 20 C 0.072 3.928 21 N -0.896 5.896 22 Si 0.902 3.098 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.282 1.282 26 C 0.119 3.881 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.400 0.600 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.384 0.616 44 H 0.268 0.732 45 H 0.068 0.932 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.246 10.654 -8.587 14.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.076 3.924 3 C -0.209 4.209 4 N -0.372 5.372 5 C 0.117 3.883 6 C -0.203 4.203 7 C -0.086 4.086 8 C -0.192 4.192 9 C -0.097 4.097 10 C -0.214 4.214 11 C 0.305 3.695 12 O -0.438 6.438 13 N -0.320 5.320 14 C -0.024 4.024 15 C -0.179 4.179 16 C 0.212 3.788 17 O -0.387 6.387 18 C -0.573 4.573 19 H 0.082 0.918 20 C -0.130 4.130 21 N -0.536 5.536 22 Si 0.729 3.271 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.208 1.208 26 C -0.003 4.003 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.235 0.765 34 H 0.144 0.856 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.235 0.765 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.107 11.620 -7.788 14.579 hybrid contribution -0.269 -1.829 0.137 1.854 sum -4.376 9.791 -7.651 13.174 Atomic orbital electron populations 1.21989 0.91767 1.03529 1.03570 1.20388 0.95433 0.92738 0.83852 1.22154 1.03188 0.93358 1.02200 1.44749 1.03658 1.64252 1.24584 1.17618 0.83395 0.94039 0.93281 1.20939 0.93279 1.07076 0.99010 1.20827 0.94825 0.96551 0.96414 1.20824 0.99097 1.04515 0.94799 1.20749 0.92605 0.97775 0.98524 1.20460 0.95971 1.08454 0.96493 1.20433 0.78668 0.81470 0.88957 1.90676 1.51250 1.65489 1.36391 1.48457 1.58436 1.04481 1.20582 1.22376 0.96807 0.91692 0.91564 1.23209 1.00958 0.92085 1.01675 1.19494 0.81321 0.89294 0.88663 1.86130 1.36907 1.41397 1.74287 1.21536 1.46906 0.92845 0.96006 0.91776 1.24978 0.93778 0.98763 0.95453 1.69584 1.46105 1.22623 1.15300 0.86378 0.77822 0.81508 0.81353 1.19613 1.20863 1.20754 1.22378 0.97237 0.91684 0.88960 0.90357 0.90879 0.91347 0.91009 0.91772 0.90966 0.76460 0.85635 0.86746 0.86949 0.86689 0.86755 0.93734 0.90882 0.90131 0.91897 0.76478 0.92199 0.91385 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.56 37.16 0.32 -1.30 16 2 C 0.17 2.29 0.70 -132.97 -0.09 2.20 16 3 C -0.15 -1.96 7.73 37.16 0.29 -1.67 16 4 N -0.74 -9.66 2.95 -47.06 -0.14 -9.80 16 5 C 0.22 3.34 4.78 -83.79 -0.40 2.94 16 6 C -0.18 -3.15 7.43 -39.38 -0.29 -3.44 16 7 C -0.07 -1.12 10.04 -39.61 -0.40 -1.51 16 8 C -0.17 -2.60 10.04 -39.55 -0.40 -2.99 16 9 C -0.08 -1.11 10.04 -39.61 -0.40 -1.50 16 10 C -0.19 -2.73 9.90 -39.38 -0.39 -3.12 16 11 C 0.52 9.56 4.00 -10.99 -0.04 9.52 16 12 O -0.56 -11.97 15.94 5.55 0.09 -11.88 16 13 N -0.59 -11.53 3.24 -170.52 -0.55 -12.08 16 14 C 0.10 1.78 5.72 -3.06 -0.02 1.76 16 15 C -0.14 -3.02 5.64 -24.89 -0.14 -3.16 16 16 C 0.25 6.11 0.89 -89.63 -0.08 6.03 16 17 O -0.58 -14.90 13.18 -35.23 -0.46 -15.36 16 18 C -0.53 -13.93 8.25 -34.44 -0.28 -14.21 16 19 H 0.06 1.68 7.77 -52.49 -0.41 1.27 16 20 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 21 N -0.90 -23.14 10.79 55.43 0.60 -22.54 16 22 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 C 0.12 2.69 6.06 -2.53 -0.02 2.68 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.75 6.70 -51.93 -0.35 0.41 16 30 H 0.07 1.06 5.37 -51.93 -0.28 0.78 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.92 8.06 -51.92 -0.42 0.50 16 33 H 0.40 4.32 8.37 -40.82 -0.34 3.98 16 34 H 0.13 2.39 3.69 -52.48 -0.19 2.20 16 35 H 0.11 1.76 8.06 -52.48 -0.42 1.33 16 36 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.04 0.69 6.83 -51.93 -0.35 0.34 16 40 H 0.07 1.30 5.08 -51.93 -0.26 1.03 16 41 H 0.08 1.84 7.85 -51.93 -0.41 1.43 16 42 H 0.06 1.36 8.03 -51.93 -0.42 0.94 16 43 H 0.38 10.15 6.93 45.56 0.32 10.46 16 44 H 0.27 6.62 8.31 -40.82 -0.34 6.29 16 45 H 0.07 1.65 8.08 -51.93 -0.42 1.23 16 46 H 0.07 1.49 8.02 -51.93 -0.42 1.07 16 LS Contribution 357.75 15.07 5.39 5.39 Total: -1.00 -29.01 357.75 -8.58 -37.59 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -6.05 Total: 19.50 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.44 Total: -6.02 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.09 Total: -44.43 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.38 Total: -27.24 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.01 -8.58 -37.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911526565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.938 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds