Wall clock time and date at job start Tue Mar 31 2020 12:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47008 * 2 1 4 4 C 1.52996 * 109.47158 * 120.00171 * 2 1 3 5 5 N 1.46502 * 109.47318 * 174.10865 * 4 2 1 6 6 C 1.46497 * 119.99818 * 276.68584 * 5 4 2 7 7 C 1.50699 * 109.47224 * 269.99636 * 6 5 4 8 8 H 1.08004 * 120.00143 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00258 * 180.02562 * 7 6 5 10 10 N 1.31506 * 120.00131 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99941 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47160 * 60.00171 * 11 9 7 13 13 H 1.48499 * 109.47094 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47200 * 299.99922 * 11 9 7 15 15 C 1.34771 * 119.99814 * 96.67968 * 5 4 2 16 16 O 1.21286 * 119.99509 * 185.40655 * 15 5 4 17 17 C 1.50693 * 120.00535 * 5.41326 * 15 5 4 18 18 N 1.46494 * 109.47673 * 174.68943 * 17 15 5 19 19 C 1.34776 * 120.00292 * 179.97438 * 18 17 15 20 20 O 1.21552 * 120.00199 * 0.02562 * 19 18 17 21 21 C 1.47848 * 120.00020 * 180.02562 * 19 18 17 22 22 C 1.39575 * 120.14648 * 179.97438 * 21 19 18 23 23 C 1.37956 * 119.85721 * 179.97438 * 22 21 19 24 24 C 1.38364 * 120.14059 * 359.97438 * 23 22 21 25 25 C 1.38358 * 120.29407 * 0.04999 * 24 23 22 26 26 C 1.37958 * 120.14571 * 359.94668 * 25 24 23 27 27 H 1.09001 * 109.46763 * 299.99721 * 1 2 3 28 28 H 1.09000 * 109.46975 * 60.00063 * 1 2 3 29 29 H 1.08999 * 109.46942 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46763 * 240.00279 * 2 1 3 31 31 H 1.09001 * 109.47372 * 184.70805 * 3 2 1 32 32 H 1.09002 * 109.47533 * 304.70395 * 3 2 1 33 33 H 1.09000 * 109.47546 * 64.71080 * 3 2 1 34 34 H 1.09003 * 109.47190 * 54.10672 * 4 2 1 35 35 H 1.09005 * 109.46936 * 294.10886 * 4 2 1 36 36 H 1.08999 * 109.47380 * 29.99515 * 6 5 4 37 37 H 1.09001 * 109.47311 * 149.99663 * 6 5 4 38 38 H 0.97006 * 120.00284 * 180.02562 * 10 9 7 39 39 H 1.09001 * 109.47545 * 54.68753 * 17 15 5 40 40 H 1.09002 * 109.47246 * 294.69585 * 17 15 5 41 41 H 0.97004 * 119.99880 * 0.02562 * 18 17 15 42 42 H 1.08000 * 120.06913 * 359.70845 * 22 21 19 43 43 H 1.07996 * 119.93226 * 179.97438 * 23 22 21 44 44 H 1.08006 * 119.84955 * 180.02562 * 24 23 22 45 45 H 1.07999 * 119.92533 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.07060 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4982 -0.8453 1.1804 6 6 4.1050 -1.9449 0.4263 7 6 4.2995 -3.1306 1.3358 8 1 4.0005 -3.0712 2.3719 9 6 4.8590 -4.2913 0.8453 10 7 5.2226 -4.3639 -0.4164 11 14 5.0994 -5.7613 1.9726 12 1 3.7838 -6.1954 2.5073 13 1 5.7146 -6.8760 1.2082 14 1 5.9903 -5.3815 3.0983 15 6 4.2812 0.0523 1.8109 16 8 5.4855 0.0082 1.6741 17 6 3.6606 1.1107 2.6859 18 7 4.7178 1.8754 3.3520 19 6 4.3964 2.8815 4.1892 20 8 3.2293 3.1542 4.3919 21 6 5.4634 3.6536 4.8609 22 6 5.1340 4.6965 5.7281 23 6 6.1344 5.4127 6.3522 24 6 7.4619 5.0987 6.1204 25 6 7.7952 4.0664 5.2616 26 6 6.8045 3.3423 4.6312 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1267 1.4437 -0.0843 32 1 1.6095 1.9801 -0.8448 33 1 1.7472 1.9314 0.9291 34 1 1.5931 -1.7140 1.3035 35 1 1.7654 -0.1501 2.1361 36 1 3.4505 -2.2239 -0.3994 37 1 5.0704 -1.6265 0.0330 38 1 5.6160 -5.1807 -0.7617 39 1 3.0275 0.6367 3.4359 40 1 3.0581 1.7812 2.0732 41 1 5.6492 1.6581 3.1899 42 1 4.0983 4.9450 5.9068 43 1 5.8810 6.2202 7.0231 44 1 8.2413 5.6622 6.6118 45 1 8.8333 3.8267 5.0846 46 1 7.0660 2.5366 3.9614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917364354.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:43 Heat of formation + Delta-G solvation = -54.407833 kcal Electronic energy + Delta-G solvation = -26576.092436 eV Core-core repulsion = 22851.387504 eV Total energy + Delta-G solvation = -3724.704932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.37128 -39.37858 -38.19020 -36.46373 -34.54174 -33.65557 -32.37038 -31.55646 -31.13231 -28.74540 -27.16868 -26.74730 -25.48517 -23.86491 -22.81394 -22.36839 -20.52550 -20.21545 -18.99373 -17.97781 -16.69770 -16.55109 -16.18795 -15.86482 -15.66572 -15.40976 -14.84174 -14.61430 -14.59221 -14.37972 -14.08885 -13.79392 -13.48589 -13.46032 -13.01018 -12.85305 -12.56724 -12.32374 -12.12982 -11.88528 -11.86702 -11.62203 -11.35588 -11.30567 -11.01030 -10.96694 -10.76853 -10.59278 -10.44311 -10.19272 -10.02543 -9.69588 -9.28047 -9.21511 -9.14572 -8.98660 -8.48328 -7.76685 -6.09670 -4.15040 0.67139 1.14446 2.78363 3.01831 3.19973 3.28793 3.33282 3.36693 3.72082 3.86909 4.40033 4.57069 4.62446 4.71565 4.85495 4.92991 5.03309 5.10839 5.15293 5.24773 5.26976 5.34792 5.44635 5.47843 5.60178 5.66006 5.73088 5.75393 5.83808 5.97407 6.05238 6.10668 6.14941 6.17289 6.20602 6.25442 6.31500 6.42929 6.54322 6.65041 6.96721 7.36266 7.42396 7.53358 7.85857 8.14078 8.16501 8.29093 8.75967 8.93073 9.50272 10.98303 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011646 B = 0.003440 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.707954 B = 8136.433332 C = 9884.439865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.151 4.151 4 C 0.110 3.890 5 N -0.587 5.587 6 C 0.247 3.753 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.898 3.102 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.503 3.497 16 O -0.543 6.543 17 C 0.088 3.912 18 N -0.708 5.708 19 C 0.558 3.442 20 O -0.544 6.544 21 C -0.131 4.131 22 C -0.061 4.061 23 C -0.131 4.131 24 C -0.097 4.097 25 C -0.127 4.127 26 C -0.084 4.084 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.034 0.966 37 H 0.045 0.955 38 H 0.264 0.736 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.411 0.589 42 H 0.136 0.864 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.129 0.871 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.233 17.138 8.062 19.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 C -0.208 4.208 4 C -0.014 4.014 5 N -0.317 5.317 6 C 0.128 3.872 7 C -0.569 4.569 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.726 3.274 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.202 1.202 15 C 0.289 3.711 16 O -0.422 6.422 17 C -0.039 4.039 18 N -0.362 5.362 19 C 0.345 3.655 20 O -0.423 6.423 21 C -0.134 4.134 22 C -0.080 4.080 23 C -0.149 4.149 24 C -0.115 4.115 25 C -0.145 4.145 26 C -0.102 4.102 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.120 0.880 41 H 0.250 0.750 42 H 0.154 0.846 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.346 17.106 7.940 19.004 hybrid contribution 0.564 -1.123 0.442 1.332 sum -1.783 15.983 8.382 18.136 Atomic orbital electron populations 1.21764 0.94838 1.01917 1.01552 1.21547 0.95623 0.96396 0.99947 1.21997 1.01348 0.96101 1.01385 1.21658 0.81322 1.01547 0.96900 1.48135 1.05470 1.27535 1.50578 1.19306 0.94586 0.82290 0.91012 1.21386 1.41505 0.97325 0.96731 0.92475 1.24918 0.95132 0.98712 0.95174 1.69917 1.41774 1.28041 1.13470 0.86561 0.78475 0.81756 0.80650 1.20196 1.21147 1.20190 1.20113 0.87397 0.82427 0.81156 1.90648 1.14354 1.73552 1.63619 1.21519 0.90862 0.94397 0.97090 1.45681 1.11382 1.33580 1.45586 1.18241 0.88556 0.79811 0.78855 1.90751 1.19590 1.68331 1.63585 1.19949 0.93195 0.99112 1.01182 1.21286 1.00451 0.92840 0.93413 1.21154 0.92722 1.00415 1.00647 1.21387 0.96542 0.96644 0.96970 1.21149 0.99635 0.96217 0.97520 1.21480 0.91883 0.98762 0.98122 0.92729 0.92748 0.92375 0.90277 0.92634 0.92707 0.92575 0.89743 0.91240 0.94759 0.93675 0.92595 0.88908 0.88023 0.74959 0.84629 0.85377 0.85637 0.85257 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.19 37.16 0.34 -1.24 16 2 C -0.12 -1.58 3.11 -90.62 -0.28 -1.86 16 3 C -0.15 -1.96 7.59 37.15 0.28 -1.67 16 4 C 0.11 1.73 4.89 -4.04 -0.02 1.71 16 5 N -0.59 -11.80 2.26 -175.06 -0.40 -12.19 16 6 C 0.25 6.20 5.22 -5.20 -0.03 6.17 16 7 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 11 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 15 C 0.50 9.95 6.52 -10.99 -0.07 9.88 16 16 O -0.54 -12.59 15.23 5.55 0.08 -12.51 16 17 C 0.09 1.40 4.51 -5.20 -0.02 1.38 16 18 N -0.71 -10.78 5.48 -62.44 -0.34 -11.12 16 19 C 0.56 8.39 7.77 -12.33 -0.10 8.30 16 20 O -0.54 -9.42 16.35 5.32 0.09 -9.33 16 21 C -0.13 -1.65 5.87 -104.97 -0.62 -2.27 16 22 C -0.06 -0.67 9.60 -39.19 -0.38 -1.05 16 23 C -0.13 -1.14 10.03 -39.64 -0.40 -1.54 16 24 C -0.10 -0.79 10.04 -39.49 -0.40 -1.19 16 25 C -0.13 -1.15 10.03 -39.64 -0.40 -1.55 16 26 C -0.08 -0.92 9.54 -39.18 -0.37 -1.29 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.22 8.01 -51.93 -0.42 0.81 16 31 H 0.05 0.82 6.87 -51.93 -0.36 0.47 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.68 6.49 -51.93 -0.34 0.34 16 34 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 35 H 0.07 0.95 6.10 -51.93 -0.32 0.63 16 36 H 0.03 0.87 7.94 -51.93 -0.41 0.46 16 37 H 0.05 1.28 7.35 -51.93 -0.38 0.90 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.09 1.43 7.37 -51.93 -0.38 1.04 16 40 H 0.10 1.49 4.80 -51.93 -0.25 1.24 16 41 H 0.41 6.15 5.49 -40.82 -0.22 5.93 16 42 H 0.14 1.47 7.65 -52.49 -0.40 1.06 16 43 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 45 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.13 1.37 6.41 -52.49 -0.34 1.03 16 LS Contribution 377.67 15.07 5.69 5.69 Total: -1.00 -32.83 377.67 -8.77 -41.60 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.74 Total: 6.16 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.87 Total: 0.51 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.00 Total: -48.58 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.17 Total: -21.84 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.83 -8.77 -41.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917364354.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.804 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds