Wall clock time and date at job start Tue Mar 31 2020 12:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47320 * 2 1 4 4 C 1.50702 * 109.46937 * 239.99905 * 2 1 3 5 5 H 1.08000 * 119.99623 * 239.99939 * 4 2 1 6 6 C 1.37875 * 119.99820 * 59.99934 * 4 2 1 7 7 N 1.31508 * 120.00208 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99454 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47323 * 0.02562 * 8 6 4 10 10 H 1.48509 * 109.46828 * 120.00526 * 8 6 4 11 11 H 1.48495 * 109.47201 * 240.00034 * 8 6 4 12 12 C 1.53001 * 109.46785 * 119.99942 * 2 1 3 13 13 N 1.46498 * 109.47345 * 299.99793 * 12 2 1 14 14 C 1.34774 * 120.00109 * 180.02562 * 13 12 2 15 15 O 1.21583 * 119.99919 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99868 * 180.02562 * 14 13 12 17 17 C 1.46506 * 120.00072 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47289 * 179.97438 * 17 16 14 19 19 C 1.37972 * 119.87929 * 259.72606 * 18 17 16 20 20 C 1.38242 * 120.34901 * 179.81928 * 19 18 17 21 21 C 1.38385 * 119.76724 * 0.39403 * 20 19 18 22 22 C 1.37699 * 119.97882 * 359.68557 * 21 20 19 23 23 C 1.38918 * 120.78818 * 0.30025 * 22 21 20 24 24 O 1.36129 * 111.23385 * 179.29170 * 23 22 21 25 25 C 1.43772 * 109.25982 * 18.86322 * 24 23 22 26 26 C 1.51643 * 132.17907 * 180.54895 * 22 21 20 27 27 H 1.08997 * 109.47050 * 300.00251 * 1 2 3 28 28 H 1.08998 * 109.46910 * 60.00122 * 1 2 3 29 29 H 1.08997 * 109.47451 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47689 * 179.97438 * 3 2 1 31 31 H 1.09010 * 109.46990 * 300.00270 * 3 2 1 32 32 H 1.09005 * 109.47153 * 59.99535 * 3 2 1 33 33 H 0.97000 * 119.99960 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46554 * 180.02562 * 12 2 1 35 35 H 1.08995 * 109.47120 * 60.00180 * 12 2 1 36 36 H 0.97006 * 119.99928 * 359.97438 * 13 12 2 37 37 H 0.97001 * 120.00676 * 359.97438 * 16 14 13 38 38 H 1.09001 * 109.47060 * 300.00359 * 17 16 14 39 39 H 1.09004 * 109.47073 * 59.99848 * 17 16 14 40 40 H 1.08004 * 119.82236 * 0.07535 * 19 18 17 41 41 H 1.07999 * 120.11040 * 180.12559 * 20 19 18 42 42 H 1.08002 * 120.01003 * 179.70184 * 21 20 19 43 43 H 1.09004 * 110.74301 * 90.65418 * 25 24 23 44 44 H 1.09002 * 110.74782 * 213.80978 * 25 24 23 45 45 H 1.08998 * 110.94025 * 46.11767 * 26 22 21 46 46 H 1.09007 * 110.96937 * 282.44300 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1473 -2.2864 -3.6037 10 1 1.1677 -1.5867 -4.8165 11 1 3.1472 -0.1860 -4.8160 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.5773 -1.4788 3.7811 16 7 1.4280 0.1443 4.7699 17 6 1.7818 -0.3562 6.1006 18 6 1.1581 0.5259 7.1514 19 6 1.9207 1.4863 7.7836 20 6 1.3576 2.3032 8.7462 21 6 0.0240 2.1504 9.0824 22 6 -0.7386 1.1914 8.4538 23 6 -0.1842 0.3648 7.4847 24 8 -1.1031 -0.5176 7.0051 25 6 -2.4241 -0.0408 7.3125 26 6 -2.1964 0.7977 8.5925 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7089 1.1613 -3.4844 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 0.9943 0.7583 2.3564 37 1 0.8700 0.9328 4.6810 38 1 1.4127 -1.3754 6.2154 39 1 2.8657 -0.3472 6.2158 40 1 2.9621 1.6032 7.5220 41 1 1.9576 3.0551 9.2372 42 1 -0.4188 2.7833 9.8373 43 1 -2.8069 0.5834 6.5050 44 1 -3.0995 -0.8736 7.5081 45 1 -2.8387 1.6783 8.6007 46 1 -2.3542 0.1944 9.4866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922841538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:26 Heat of formation + Delta-G solvation = -61.258924 kcal Electronic energy + Delta-G solvation = -26384.033923 eV Core-core repulsion = 22659.031906 eV Total energy + Delta-G solvation = -3725.002017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.13355 -40.98914 -38.67787 -38.17036 -36.02975 -34.99209 -33.57637 -32.62971 -31.30778 -30.18973 -27.73747 -27.55918 -27.25528 -25.92818 -24.22096 -23.04467 -22.08077 -21.84862 -20.58222 -19.60979 -18.33421 -17.78470 -17.67451 -17.19092 -17.09174 -16.59931 -16.58024 -16.21878 -15.44853 -15.28042 -15.05498 -14.72697 -14.54896 -14.37583 -14.08961 -13.98920 -13.85821 -13.60031 -13.36937 -13.17184 -13.10185 -12.69605 -12.62595 -12.56430 -12.46743 -12.24535 -12.13470 -11.84479 -11.71455 -11.48033 -11.42594 -11.15739 -10.69413 -10.41381 -10.31614 -9.81591 -9.66439 -9.10200 -8.01763 -6.17261 0.20123 0.36160 1.41958 1.45823 1.55677 1.86183 2.20016 2.34340 2.46971 2.74457 3.21829 3.47422 3.49750 3.55199 3.76990 3.99507 4.15332 4.29106 4.33505 4.42590 4.46050 4.54045 4.59168 4.65004 4.70815 4.72147 4.87672 4.89952 5.00218 5.06414 5.08605 5.11596 5.20725 5.38211 5.38564 5.42319 5.46245 5.53609 5.63061 5.67632 5.68131 5.70176 6.05186 6.15310 6.20790 6.22380 6.44480 6.86955 7.14163 7.50374 7.62389 8.97573 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023504 B = 0.002490 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.980967 B =11242.453113 C =11576.498721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.053 3.947 3 C -0.119 4.119 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.946 3.054 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.168 3.832 13 N -0.725 5.725 14 C 0.698 3.302 15 O -0.642 6.642 16 N -0.727 5.727 17 C 0.192 3.808 18 C -0.140 4.140 19 C -0.071 4.071 20 C -0.147 4.147 21 C -0.063 4.063 22 C -0.188 4.188 23 C 0.102 3.898 24 O -0.329 6.329 25 C 0.040 3.960 26 C -0.102 4.102 27 H 0.034 0.966 28 H 0.063 0.937 29 H 0.016 0.984 30 H 0.018 0.982 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.260 0.740 34 H 0.036 0.964 35 H 0.033 0.967 36 H 0.404 0.596 37 H 0.405 0.595 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.146 0.854 41 H 0.157 0.843 42 H 0.153 0.847 43 H 0.082 0.918 44 H 0.123 0.877 45 H 0.113 0.887 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.091 7.396 25.961 27.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.177 4.177 4 C -0.566 4.566 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.773 3.227 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.043 3.957 13 N -0.381 5.381 14 C 0.397 3.603 15 O -0.524 6.524 16 N -0.383 5.383 17 C 0.068 3.932 18 C -0.142 4.142 19 C -0.089 4.089 20 C -0.165 4.165 21 C -0.081 4.081 22 C -0.188 4.188 23 C 0.056 3.944 24 O -0.243 6.243 25 C -0.034 4.034 26 C -0.139 4.139 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.241 0.759 37 H 0.240 0.760 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.163 0.837 41 H 0.175 0.825 42 H 0.171 0.829 43 H 0.101 0.899 44 H 0.141 0.859 45 H 0.131 0.869 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.522 6.383 25.780 27.348 hybrid contribution -0.182 -0.090 -1.254 1.270 sum -6.704 6.294 24.527 26.194 Atomic orbital electron populations 1.21658 0.97181 0.98583 1.00274 1.18355 0.93207 0.93093 0.90160 1.21658 0.97960 0.97772 1.00317 1.21298 1.31646 1.12136 0.91548 0.93760 1.25451 0.95141 0.95607 1.00957 1.69912 1.37070 1.23303 1.23546 0.85690 0.78132 0.78720 0.80163 1.20070 1.20690 1.20618 1.21134 0.96722 0.94600 0.83202 1.45196 1.55835 1.33190 1.03848 1.16174 0.80225 0.82600 0.81264 1.90848 1.45152 1.29705 1.86721 1.44999 1.56486 1.32966 1.03894 1.19779 0.99141 0.95647 0.78585 1.19104 0.91540 1.01711 1.01796 1.21097 1.00251 0.92635 0.94923 1.21393 0.95229 1.00937 0.98902 1.20739 0.93447 0.95658 0.98247 1.21156 0.97963 1.00257 0.99460 1.19673 0.90968 0.90190 0.93588 1.86872 1.16631 1.43884 1.76906 1.24143 0.82094 1.00008 0.97188 1.21838 0.91780 1.01487 0.98783 0.94688 0.91769 0.96429 0.96250 0.91798 0.94597 0.93016 0.94567 0.94841 0.75926 0.75959 0.93196 0.90918 0.83670 0.82517 0.82928 0.89939 0.85950 0.86867 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.08 71.98 0.58 -4.87 16 2 C 0.05 2.51 0.50 -52.93 -0.03 2.48 16 3 C -0.12 -5.42 8.08 71.98 0.58 -4.84 16 4 C -0.53 -28.57 8.01 25.60 0.21 -28.36 16 5 H 0.04 2.46 7.74 -2.91 -0.02 2.44 16 6 C 0.03 1.50 5.15 84.66 0.44 1.94 16 7 N -0.90 -48.46 9.35 21.45 0.20 -48.26 16 8 Si 0.95 43.24 29.54 68.60 2.03 45.27 16 9 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.17 7.58 4.50 86.38 0.39 7.96 16 13 N -0.73 -27.22 4.96 -478.55 -2.37 -29.60 16 14 C 0.70 26.64 8.57 179.06 1.53 28.17 16 15 O -0.64 -30.09 16.34 -3.98 -0.07 -30.16 16 16 N -0.73 -21.16 5.55 -482.28 -2.68 -23.84 16 17 C 0.19 5.20 5.77 85.63 0.49 5.69 16 18 C -0.14 -3.04 5.27 -19.68 -0.10 -3.14 16 19 C -0.07 -1.16 9.63 22.21 0.21 -0.95 16 20 C -0.15 -1.83 10.07 22.31 0.22 -1.61 16 21 C -0.06 -0.78 10.03 22.18 0.22 -0.56 16 22 C -0.19 -3.00 6.27 -19.53 -0.12 -3.13 16 23 C 0.10 2.21 6.76 22.68 0.15 2.36 16 24 O -0.33 -7.75 11.05 -95.01 -1.05 -8.80 16 25 C 0.04 0.56 8.01 72.56 0.58 1.14 16 26 C -0.10 -1.10 7.12 30.73 0.22 -0.88 16 27 H 0.03 1.35 6.86 -2.39 -0.02 1.33 16 28 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 3.20 6.07 -2.38 -0.01 3.19 16 32 H 0.04 1.37 6.86 -2.38 -0.02 1.35 16 33 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 34 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.40 13.19 6.18 -92.70 -0.57 12.62 16 37 H 0.41 9.81 8.48 -92.71 -0.79 9.03 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.94 7.99 -2.38 -0.02 1.92 16 40 H 0.15 1.97 8.02 -2.91 -0.02 1.95 16 41 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 43 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.10 0.86 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -68.96 371.90 1.28 -67.68 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.36 Total: 26.30 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 5.58 Total: 1.42 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -4.85 Total: -101.71 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -1.11 Total: -38.96 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -68.96 1.28 -67.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922841538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.419 kcal (2) G-P(sol) polarization free energy of solvation -68.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds