Wall clock time and date at job start Tue Mar 31 2020 13:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47614 * 2 1 4 4 C 1.53000 * 109.46940 * 120.00554 * 2 1 3 5 5 O 1.42901 * 109.47466 * 64.99220 * 4 2 1 6 6 C 1.35711 * 116.99843 * 179.97438 * 5 4 2 7 7 C 1.39001 * 119.90863 * 180.02562 * 6 5 4 8 8 C 1.37699 * 120.08628 * 180.02562 * 7 6 5 9 9 C 1.39736 * 119.91141 * 0.02562 * 8 7 6 10 10 C 1.47607 * 120.08625 * 180.02562 * 9 8 7 11 11 O 1.21581 * 120.00201 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99891 * 180.02562 * 10 9 8 13 13 C 1.46494 * 119.99677 * 179.97438 * 12 10 9 14 14 C 1.53498 * 114.20393 * 155.00067 * 13 12 10 15 15 N 1.47065 * 87.98675 * 87.71349 * 14 13 12 16 16 C 1.36935 * 136.05778 * 207.07950 * 15 14 13 17 17 H 1.07997 * 119.99961 * 6.77313 * 16 15 14 18 18 C 1.38812 * 119.99962 * 186.76980 * 16 15 14 19 19 N 1.31618 * 119.99992 * 172.26235 * 18 16 15 20 20 Si 1.86794 * 120.00181 * 352.26315 * 18 16 15 21 21 H 1.48495 * 109.47373 * 175.35665 * 20 18 16 22 22 H 1.48501 * 109.47224 * 295.36298 * 20 18 16 23 23 H 1.48505 * 109.47188 * 55.35894 * 20 18 16 24 24 C 1.47070 * 87.88470 * 27.34556 * 15 14 13 25 25 C 1.39728 * 119.82565 * 0.27217 * 9 8 7 26 26 C 1.37705 * 119.91108 * 359.47180 * 25 9 8 27 27 H 1.09004 * 109.46991 * 300.00603 * 1 2 3 28 28 H 1.09000 * 109.46798 * 59.99714 * 1 2 3 29 29 H 1.08992 * 109.47587 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46780 * 239.99875 * 2 1 3 31 31 H 1.08995 * 109.47581 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47272 * 299.99996 * 3 2 1 33 33 H 1.09000 * 109.46846 * 60.00062 * 3 2 1 34 34 H 1.09005 * 109.46851 * 304.99112 * 4 2 1 35 35 H 1.09001 * 109.47304 * 185.00050 * 4 2 1 36 36 H 1.07995 * 119.95200 * 359.97438 * 7 6 5 37 37 H 1.07994 * 120.04531 * 179.97438 * 8 7 6 38 38 H 0.97001 * 119.99850 * 359.97438 * 12 10 9 39 39 H 1.08994 * 113.28499 * 21.93089 * 13 12 10 40 40 H 1.09003 * 113.46903 * 332.93254 * 14 13 12 41 41 H 1.09002 * 113.51847 * 202.50737 * 14 13 12 42 42 H 0.97005 * 119.99783 * 4.88000 * 19 18 16 43 43 H 1.08996 * 113.47141 * 87.43428 * 24 15 14 44 44 H 1.09002 * 113.46180 * 217.88172 * 24 15 14 45 45 H 1.07999 * 120.04879 * 179.69734 * 25 9 8 46 46 H 1.07995 * 119.95784 * 180.24572 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 8 1.6618 -2.0982 1.1920 6 6 2.0398 -2.8847 2.2313 7 6 1.7045 -4.2336 2.2376 8 6 2.0858 -5.0348 3.2906 9 6 2.8103 -4.4900 4.3540 10 6 3.2214 -5.3454 5.4845 11 8 2.9294 -6.5256 5.4914 12 7 3.9198 -4.8180 6.5096 13 6 4.3273 -5.6669 7.6317 14 6 5.5636 -5.1603 8.3875 15 7 4.6589 -4.3586 9.2251 16 6 4.7508 -3.1958 9.9425 17 1 5.6435 -2.5913 9.8791 18 6 3.6964 -2.7941 10.7511 19 7 3.8401 -1.7623 11.5556 20 14 2.0737 -3.7177 10.6975 21 1 1.1563 -3.1668 11.7271 22 1 1.4602 -3.5630 9.3540 23 1 2.3145 -5.1577 10.9688 24 6 3.6141 -5.3588 8.9586 25 6 3.1400 -3.1322 4.3469 26 6 2.7596 -2.3387 3.2877 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 1.6054 -0.2618 2.1370 35 1 3.1263 -0.6445 1.2952 36 1 1.1435 -4.6536 1.4159 37 1 1.8245 -6.0827 3.2950 38 1 4.1524 -3.8763 6.5042 39 1 4.3605 -6.7269 7.3803 40 1 6.2324 -4.5587 7.7719 41 1 6.0870 -5.9417 8.9385 42 1 4.6569 -1.2395 11.5326 43 1 3.6229 -6.1931 9.6600 44 1 2.6220 -4.9261 8.8296 45 1 3.6956 -2.7063 5.1693 46 1 3.0175 -1.2901 3.2795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031350936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:37 Heat of formation + Delta-G solvation = 5.904562 kcal Electronic energy + Delta-G solvation = -25998.456067 eV Core-core repulsion = 22276.366477 eV Total energy + Delta-G solvation = -3722.089590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.62651 -39.74615 -38.32346 -37.25226 -35.55517 -33.57748 -32.24915 -31.18287 -30.28473 -27.87761 -27.59851 -26.98514 -25.39503 -23.87167 -23.02976 -22.21494 -20.67774 -20.36827 -19.54713 -18.57087 -17.56275 -17.49716 -16.68549 -16.30256 -15.71993 -15.25010 -14.98047 -14.79660 -14.62417 -14.35710 -13.97915 -13.79261 -13.76687 -13.60764 -13.27770 -13.06264 -12.88973 -12.73204 -12.53686 -12.45565 -12.04836 -11.62277 -11.53993 -11.38070 -11.33877 -11.05021 -10.98127 -10.89460 -10.57152 -10.32394 -9.78202 -9.51049 -9.25348 -9.23538 -8.89997 -8.61583 -8.34089 -7.20009 -6.36273 -3.27670 0.82606 1.16634 2.81110 2.91350 3.36966 3.42589 3.44724 3.64151 3.81739 4.28169 4.35753 4.54890 4.56421 4.60404 4.66328 4.70569 4.84739 4.92071 4.98197 5.07512 5.13269 5.14049 5.21633 5.25611 5.39074 5.41152 5.44275 5.48304 5.61743 5.76645 5.80535 5.84022 5.88358 5.90428 5.98808 6.08904 6.18302 6.21471 6.27718 6.31038 6.41471 6.48309 6.97466 7.05552 7.10440 7.81744 8.18861 8.44222 8.92964 9.45827 10.31811 11.16342 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.002915 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.107624 B = 9604.303373 C =10732.161841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.147 4.147 4 C 0.059 3.941 5 O -0.310 6.310 6 C 0.153 3.847 7 C -0.164 4.164 8 C -0.020 4.020 9 C -0.170 4.170 10 C 0.562 3.438 11 O -0.548 6.548 12 N -0.692 5.692 13 C 0.099 3.901 14 C 0.114 3.886 15 N -0.629 5.629 16 C -0.307 4.307 17 H 0.083 0.917 18 C -0.023 4.023 19 N -0.933 5.933 20 Si 1.070 2.930 21 H -0.296 1.296 22 H -0.294 1.294 23 H -0.286 1.286 24 C 0.084 3.916 25 C -0.040 4.040 26 C -0.217 4.217 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.405 0.595 39 H 0.105 0.895 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.261 0.739 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.133 0.867 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.396 1.503 -24.823 25.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.016 4.016 5 O -0.223 6.223 6 C 0.107 3.893 7 C -0.182 4.182 8 C -0.039 4.039 9 C -0.173 4.173 10 C 0.350 3.650 11 O -0.428 6.428 12 N -0.342 5.342 13 C -0.008 4.008 14 C -0.013 4.013 15 N -0.358 5.358 16 C -0.434 4.434 17 H 0.100 0.900 18 C -0.222 4.222 19 N -0.575 5.575 20 Si 0.903 3.097 21 H -0.223 1.223 22 H -0.222 1.222 23 H -0.213 1.213 24 C -0.042 4.042 25 C -0.059 4.059 26 C -0.236 4.236 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.154 0.846 37 H 0.161 0.839 38 H 0.241 0.759 39 H 0.123 0.877 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.150 0.850 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.173 0.799 -24.133 24.694 hybrid contribution 1.863 0.831 -0.294 2.061 sum -3.310 1.629 -24.427 24.704 Atomic orbital electron populations 1.21834 0.94252 1.02611 1.01864 1.21127 0.97058 0.95857 0.97236 1.21793 1.01305 0.94710 1.02663 1.23006 0.99801 0.79253 0.99527 1.86006 1.73829 1.21087 1.41427 1.19248 0.92639 0.90831 0.86580 1.20372 1.06010 0.90753 1.01077 1.21067 0.92178 1.00227 0.90382 1.19892 1.05912 0.94122 0.97409 1.18122 0.77765 0.87221 0.81931 1.90736 1.56007 1.16222 1.79802 1.45421 1.55476 1.13542 1.19716 1.22477 0.97719 0.94589 0.85997 1.22713 0.93027 0.93966 0.91625 1.46128 1.08318 1.21383 1.59978 1.20102 1.04165 0.95864 1.23220 0.89962 1.25709 1.02329 1.00389 0.93734 1.70933 1.30593 1.20571 1.35414 0.83687 0.75898 0.75075 0.75043 1.22305 1.22237 1.21329 1.23281 0.94893 0.92880 0.93169 1.21207 0.95410 0.92363 0.96952 1.21176 1.05454 1.01090 0.95854 0.92573 0.92460 0.91815 0.90061 0.92258 0.91651 0.92167 0.91579 0.91709 0.84612 0.83901 0.75893 0.87709 0.93299 0.92979 0.92926 0.92642 0.92786 0.84959 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.09 37.16 0.34 -0.62 16 2 C -0.09 -0.59 3.16 -90.62 -0.29 -0.88 16 3 C -0.15 -0.74 9.19 37.15 0.34 -0.40 16 4 C 0.06 0.45 4.11 37.16 0.15 0.60 16 5 O -0.31 -3.13 9.66 -18.84 -0.18 -3.32 16 6 C 0.15 1.71 6.70 -39.02 -0.26 1.45 16 7 C -0.16 -1.81 9.97 -39.50 -0.39 -2.21 16 8 C -0.02 -0.25 9.58 -39.22 -0.38 -0.62 16 9 C -0.17 -2.40 5.87 -104.96 -0.62 -3.01 16 10 C 0.56 9.43 7.76 -12.43 -0.10 9.34 16 11 O -0.55 -10.55 15.93 5.29 0.08 -10.47 16 12 N -0.69 -11.71 5.35 -54.50 -0.29 -12.00 16 13 C 0.10 1.78 4.61 -67.67 -0.31 1.47 16 14 C 0.11 2.15 8.44 -8.51 -0.07 2.08 16 15 N -0.63 -15.02 3.70 -184.60 -0.68 -15.70 16 16 C -0.31 -8.64 11.08 -15.06 -0.17 -8.80 16 17 H 0.08 2.42 8.05 -52.49 -0.42 2.00 16 18 C -0.02 -0.67 5.50 -17.43 -0.10 -0.76 16 19 N -0.93 -29.20 13.70 55.49 0.76 -28.44 16 20 Si 1.07 27.17 25.13 -169.99 -4.27 22.90 16 21 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 22 H -0.29 -7.18 6.65 56.52 0.38 -6.80 16 23 H -0.29 -6.85 6.13 56.52 0.35 -6.50 16 24 C 0.08 1.81 5.54 -8.36 -0.05 1.77 16 25 C -0.04 -0.50 9.53 -39.22 -0.37 -0.88 16 26 C -0.22 -2.39 9.01 -39.50 -0.36 -2.75 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.48 7.82 -51.93 -0.41 0.07 16 30 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.49 7.65 -51.93 -0.40 0.09 16 35 H 0.06 0.44 7.65 -51.93 -0.40 0.05 16 36 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.14 1.72 7.64 -52.49 -0.40 1.31 16 38 H 0.40 6.50 6.78 -40.82 -0.28 6.22 16 39 H 0.11 1.78 7.45 -51.93 -0.39 1.39 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.26 8.02 8.73 -40.82 -0.36 7.67 16 43 H 0.06 1.16 7.73 -51.93 -0.40 0.76 16 44 H 0.05 1.24 4.65 -51.93 -0.24 1.00 16 45 H 0.13 1.54 6.39 -52.49 -0.34 1.20 16 46 H 0.13 1.19 6.28 -52.49 -0.33 0.86 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -33.66 372.54 -8.62 -42.29 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.03 Total: 3.35 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.62 Total: -4.23 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.21 Total: -56.14 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.10 Total: -13.79 kcal Atomic # 14 Polarization: 27.17 SS G_CDS: -4.27 Total: 22.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.66 -8.62 -42.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031350936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.192 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds