Wall clock time and date at job start Tue Mar 31 2020 13:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47614 * 2 1 4 4 C 1.53000 * 109.46940 * 120.00554 * 2 1 3 5 5 O 1.42901 * 109.47466 * 64.99220 * 4 2 1 6 6 C 1.35711 * 116.99843 * 179.97438 * 5 4 2 7 7 C 1.39001 * 119.90863 * 180.02562 * 6 5 4 8 8 C 1.37699 * 120.08628 * 180.02562 * 7 6 5 9 9 C 1.39736 * 119.91141 * 0.02562 * 8 7 6 10 10 C 1.47607 * 120.08625 * 180.02562 * 9 8 7 11 11 O 1.21581 * 120.00201 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99891 * 180.02562 * 10 9 8 13 13 C 1.46494 * 119.99677 * 179.97438 * 12 10 9 14 14 C 1.53498 * 114.20393 * 155.00067 * 13 12 10 15 15 N 1.47065 * 87.98675 * 87.71349 * 14 13 12 16 16 C 1.36935 * 136.05778 * 207.07950 * 15 14 13 17 17 H 1.07997 * 119.99961 * 6.77313 * 16 15 14 18 18 C 1.38812 * 119.99962 * 186.76980 * 16 15 14 19 19 N 1.31618 * 119.99992 * 172.26235 * 18 16 15 20 20 Si 1.86794 * 120.00181 * 352.26315 * 18 16 15 21 21 H 1.48495 * 109.47373 * 175.35665 * 20 18 16 22 22 H 1.48501 * 109.47224 * 295.36298 * 20 18 16 23 23 H 1.48505 * 109.47188 * 55.35894 * 20 18 16 24 24 C 1.47070 * 87.88470 * 27.34556 * 15 14 13 25 25 C 1.39728 * 119.82565 * 0.27217 * 9 8 7 26 26 C 1.37705 * 119.91108 * 359.47180 * 25 9 8 27 27 H 1.09004 * 109.46991 * 300.00603 * 1 2 3 28 28 H 1.09000 * 109.46798 * 59.99714 * 1 2 3 29 29 H 1.08992 * 109.47587 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46780 * 239.99875 * 2 1 3 31 31 H 1.08995 * 109.47581 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47272 * 299.99996 * 3 2 1 33 33 H 1.09000 * 109.46846 * 60.00062 * 3 2 1 34 34 H 1.09005 * 109.46851 * 304.99112 * 4 2 1 35 35 H 1.09001 * 109.47304 * 185.00050 * 4 2 1 36 36 H 1.07995 * 119.95200 * 359.97438 * 7 6 5 37 37 H 1.07994 * 120.04531 * 179.97438 * 8 7 6 38 38 H 0.97001 * 119.99850 * 359.97438 * 12 10 9 39 39 H 1.08994 * 113.28499 * 21.93089 * 13 12 10 40 40 H 1.09003 * 113.46903 * 332.93254 * 14 13 12 41 41 H 1.09002 * 113.51847 * 202.50737 * 14 13 12 42 42 H 0.97005 * 119.99783 * 4.88000 * 19 18 16 43 43 H 1.08996 * 113.47141 * 87.43428 * 24 15 14 44 44 H 1.09002 * 113.46180 * 217.88172 * 24 15 14 45 45 H 1.07999 * 120.04879 * 179.69734 * 25 9 8 46 46 H 1.07995 * 119.95784 * 180.24572 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 8 1.6618 -2.0982 1.1920 6 6 2.0398 -2.8847 2.2313 7 6 1.7045 -4.2336 2.2376 8 6 2.0858 -5.0348 3.2906 9 6 2.8103 -4.4900 4.3540 10 6 3.2214 -5.3454 5.4845 11 8 2.9294 -6.5256 5.4914 12 7 3.9198 -4.8180 6.5096 13 6 4.3273 -5.6669 7.6317 14 6 5.5636 -5.1603 8.3875 15 7 4.6589 -4.3586 9.2251 16 6 4.7508 -3.1958 9.9425 17 1 5.6435 -2.5913 9.8791 18 6 3.6964 -2.7941 10.7511 19 7 3.8401 -1.7623 11.5556 20 14 2.0737 -3.7177 10.6975 21 1 1.1563 -3.1668 11.7271 22 1 1.4602 -3.5630 9.3540 23 1 2.3145 -5.1577 10.9688 24 6 3.6141 -5.3588 8.9586 25 6 3.1400 -3.1322 4.3469 26 6 2.7596 -2.3387 3.2877 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 1.6054 -0.2618 2.1370 35 1 3.1263 -0.6445 1.2952 36 1 1.1435 -4.6536 1.4159 37 1 1.8245 -6.0827 3.2950 38 1 4.1524 -3.8763 6.5042 39 1 4.3605 -6.7269 7.3803 40 1 6.2324 -4.5587 7.7719 41 1 6.0870 -5.9417 8.9385 42 1 4.6569 -1.2395 11.5326 43 1 3.6229 -6.1931 9.6600 44 1 2.6220 -4.9261 8.8296 45 1 3.6956 -2.7063 5.1693 46 1 3.0175 -1.2901 3.2795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031350936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:36 Heat of formation + Delta-G solvation = -16.017660 kcal Electronic energy + Delta-G solvation = -25999.406686 eV Core-core repulsion = 22276.366477 eV Total energy + Delta-G solvation = -3723.040209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64633 -40.94499 -39.67906 -38.27794 -36.15892 -35.18673 -34.17219 -32.13791 -31.31897 -29.66268 -28.06030 -27.68169 -27.03786 -25.17569 -24.15207 -23.53363 -21.77995 -21.21154 -21.03394 -19.58187 -19.42236 -18.67342 -17.70197 -17.23840 -16.93474 -16.69989 -16.16949 -15.93239 -15.67330 -15.56784 -15.28671 -15.18248 -14.88860 -14.86978 -14.40502 -14.16951 -13.70786 -13.61376 -13.44805 -13.37780 -13.25867 -12.99228 -12.80281 -12.48438 -12.24991 -12.10333 -12.03322 -12.01445 -11.61035 -11.53029 -11.37644 -11.27379 -11.13155 -10.98592 -10.15515 -10.04646 -9.31421 -9.21911 -8.64427 -5.46955 -0.17328 0.26961 1.38204 1.43963 1.63412 1.76859 2.05956 2.12023 2.49833 2.78127 2.92933 3.23094 3.57579 3.62641 3.70857 3.77132 3.83902 3.89801 4.10688 4.13614 4.26598 4.31836 4.34426 4.42211 4.49459 4.58459 4.62920 4.65804 4.66511 4.75165 4.79223 4.89045 4.90852 4.98245 5.00294 5.05914 5.16924 5.17176 5.20884 5.30369 5.36871 5.39367 5.53792 5.61471 5.94767 6.30727 6.50684 6.69647 7.13761 7.31861 8.25910 8.91232 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.002915 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.107624 B = 9604.303373 C =10732.161841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.145 4.145 4 C 0.051 3.949 5 O -0.315 6.315 6 C 0.156 3.844 7 C -0.163 4.163 8 C -0.022 4.022 9 C -0.193 4.193 10 C 0.563 3.437 11 O -0.576 6.576 12 N -0.694 5.694 13 C 0.119 3.881 14 C 0.118 3.882 15 N -0.656 5.656 16 C -0.284 4.284 17 H 0.058 0.942 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 1.106 2.894 21 H -0.307 1.307 22 H -0.283 1.283 23 H -0.264 1.264 24 C 0.074 3.926 25 C -0.043 4.043 26 C -0.217 4.217 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.156 0.844 37 H 0.144 0.856 38 H 0.408 0.592 39 H 0.123 0.877 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.248 0.752 43 H 0.068 0.932 44 H 0.041 0.959 45 H 0.137 0.863 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 0.980 -27.059 27.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.202 4.202 4 C -0.024 4.024 5 O -0.228 6.228 6 C 0.110 3.890 7 C -0.182 4.182 8 C -0.041 4.041 9 C -0.196 4.196 10 C 0.353 3.647 11 O -0.458 6.458 12 N -0.343 5.343 13 C 0.012 3.988 14 C -0.007 4.007 15 N -0.385 5.385 16 C -0.412 4.412 17 H 0.076 0.924 18 C -0.273 4.273 19 N -0.618 5.618 20 Si 0.934 3.066 21 H -0.235 1.235 22 H -0.210 1.210 23 H -0.189 1.189 24 C -0.052 4.052 25 C -0.062 4.062 26 C -0.235 4.235 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.173 0.827 37 H 0.162 0.838 38 H 0.245 0.755 39 H 0.141 0.859 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.059 0.941 45 H 0.154 0.846 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.386 0.250 -26.420 26.965 hybrid contribution 2.004 1.031 0.236 2.266 sum -3.383 1.281 -26.184 26.433 Atomic orbital electron populations 1.21835 0.94489 1.01910 1.02342 1.21140 0.96836 0.96486 0.96556 1.21784 1.01618 0.93739 1.03095 1.23261 1.00625 0.78045 1.00421 1.86020 1.73644 1.22199 1.40915 1.19391 0.91895 0.91067 0.86685 1.20564 1.05713 0.90791 1.01098 1.21131 0.92029 1.00538 0.90413 1.19786 1.07927 0.94565 0.97305 1.18496 0.76884 0.87111 0.82186 1.90712 1.57130 1.17483 1.80464 1.45453 1.55664 1.13676 1.19534 1.22261 0.95974 0.95636 0.84917 1.22901 0.93223 0.93727 0.90882 1.46177 1.11175 1.21263 1.59889 1.19987 1.02513 0.96910 1.21749 0.92379 1.26779 1.05316 1.00949 0.94236 1.71018 1.30375 1.22311 1.38055 0.83236 0.72828 0.75349 0.75179 1.23518 1.20989 1.18909 1.23507 0.93948 0.92285 0.95424 1.21281 0.95449 0.91886 0.97566 1.21387 1.04933 1.01992 0.95232 0.92689 0.91452 0.93059 0.90081 0.91772 0.90872 0.92125 0.91222 0.90647 0.82681 0.83810 0.75508 0.85916 0.92126 0.90730 0.94230 0.91424 0.94081 0.84567 0.82856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.09 71.98 0.65 -1.03 16 2 C -0.09 -0.97 3.16 -10.80 -0.03 -1.01 16 3 C -0.15 -1.14 9.19 71.98 0.66 -0.47 16 4 C 0.05 0.67 4.11 71.98 0.30 0.96 16 5 O -0.31 -5.68 9.66 -90.32 -0.87 -6.55 16 6 C 0.16 3.15 6.70 22.64 0.15 3.31 16 7 C -0.16 -3.31 9.97 22.33 0.22 -3.09 16 8 C -0.02 -0.53 9.58 22.50 0.22 -0.31 16 9 C -0.19 -5.20 5.87 -20.08 -0.12 -5.31 16 10 C 0.56 18.20 7.76 86.72 0.67 18.87 16 11 O -0.58 -21.49 15.93 -3.97 -0.06 -21.55 16 12 N -0.69 -22.31 5.35 -444.61 -2.38 -24.69 16 13 C 0.12 4.01 4.61 45.55 0.21 4.22 16 14 C 0.12 4.17 8.44 83.18 0.70 4.87 16 15 N -0.66 -30.34 3.70 -737.96 -2.73 -33.07 16 16 C -0.28 -15.98 11.08 84.03 0.93 -15.05 16 17 H 0.06 3.48 8.05 -2.91 -0.02 3.46 16 18 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 19 N -0.97 -62.31 13.70 21.65 0.30 -62.01 16 20 Si 1.11 54.84 25.13 68.60 1.72 56.56 16 21 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 22 H -0.28 -13.28 6.65 99.48 0.66 -12.62 16 23 H -0.26 -11.93 6.13 99.48 0.61 -11.32 16 24 C 0.07 3.03 5.54 83.27 0.46 3.49 16 25 C -0.04 -1.01 9.53 22.50 0.21 -0.79 16 26 C -0.22 -4.32 9.01 22.33 0.20 -4.12 16 27 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.71 7.82 -2.39 -0.02 0.69 16 30 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.07 0.87 7.65 -2.38 -0.02 0.86 16 35 H 0.08 0.84 7.65 -2.39 -0.02 0.82 16 36 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 37 H 0.14 3.32 7.64 -2.91 -0.02 3.30 16 38 H 0.41 12.53 6.78 -92.71 -0.63 11.90 16 39 H 0.12 3.80 7.45 -2.39 -0.02 3.78 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.25 15.87 8.73 -92.70 -0.81 15.06 16 43 H 0.07 2.62 7.73 -2.39 -0.02 2.61 16 44 H 0.04 1.80 4.65 -2.39 -0.01 1.79 16 45 H 0.14 2.99 6.39 -2.91 -0.02 2.97 16 46 H 0.15 2.34 6.28 -2.91 -0.02 2.32 16 Total: -1.00 -72.28 372.54 2.06 -70.22 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.18 Total: 20.87 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 5.91 Total: 0.23 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -4.81 Total: -119.77 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.94 Total: -28.10 kcal Atomic # 14 Polarization: 54.84 SS G_CDS: 1.72 Total: 56.56 kcal Total: -72.28 2.06 -70.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031350936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.197 kcal (2) G-P(sol) polarization free energy of solvation -72.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds