Wall clock time and date at job start Tue Mar 31 2020 13:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47161 * 2 1 4 4 C 1.53011 * 109.47014 * 119.99856 * 2 1 3 5 5 O 1.42900 * 109.46811 * 65.00160 * 4 2 1 6 6 C 1.35907 * 116.99518 * 180.02562 * 5 4 2 7 7 C 1.38857 * 119.98773 * 0.02562 * 6 5 4 8 8 C 1.38245 * 120.23952 * 179.97438 * 7 6 5 9 9 C 1.38001 * 120.20688 * 359.74817 * 8 7 6 10 10 C 1.39563 * 119.96441 * 0.50459 * 9 8 7 11 11 C 1.47865 * 120.11622 * 179.77107 * 10 9 8 12 12 O 1.21552 * 119.99914 * 179.72876 * 11 10 9 13 13 N 1.34776 * 120.00139 * 359.72080 * 11 10 9 14 14 C 1.46502 * 119.99960 * 179.97438 * 13 11 10 15 15 C 1.53952 * 113.73599 * 106.26593 * 14 13 11 16 16 N 1.47808 * 86.03517 * 90.88217 * 15 14 13 17 17 C 1.36933 * 134.45725 * 204.64095 * 16 15 14 18 18 H 1.07996 * 120.00846 * 173.35075 * 17 16 15 19 19 C 1.38814 * 119.99714 * 353.35046 * 17 16 15 20 20 N 1.31625 * 120.00245 * 5.06241 * 19 17 16 21 21 Si 1.86809 * 120.00055 * 185.06239 * 19 17 16 22 22 H 1.48500 * 109.46973 * 94.98689 * 21 19 17 23 23 H 1.48500 * 109.47017 * 214.98741 * 21 19 17 24 24 H 1.48499 * 109.46841 * 334.98626 * 21 19 17 25 25 C 1.47582 * 91.05267 * 24.54774 * 16 15 14 26 26 C 1.38458 * 119.98334 * 180.02562 * 6 5 4 27 27 H 1.09003 * 109.46902 * 60.00678 * 1 2 3 28 28 H 1.09005 * 109.47411 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47434 * 300.00448 * 1 2 3 30 30 H 1.09003 * 109.47581 * 239.99686 * 2 1 3 31 31 H 1.09005 * 109.47346 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47398 * 299.99396 * 3 2 1 33 33 H 1.08997 * 109.47529 * 59.99963 * 3 2 1 34 34 H 1.09000 * 109.46958 * 305.00125 * 4 2 1 35 35 H 1.08991 * 109.46666 * 185.00284 * 4 2 1 36 36 H 1.07999 * 119.87618 * 359.96459 * 7 6 5 37 37 H 1.08001 * 119.89555 * 180.02562 * 8 7 6 38 38 H 1.08006 * 120.01847 * 180.25792 * 9 8 7 39 39 H 0.96996 * 119.99562 * 0.02562 * 13 11 10 40 40 H 1.09000 * 112.94445 * 334.67371 * 14 13 11 41 41 H 1.09004 * 113.76381 * 205.14881 * 15 14 13 42 42 H 1.09003 * 113.76793 * 336.54093 * 15 14 13 43 43 H 0.96995 * 119.99775 * 180.02562 * 20 19 17 44 44 H 1.08997 * 113.76639 * 221.14963 * 25 16 15 45 45 H 1.08998 * 113.76570 * 89.75452 * 25 16 15 46 46 H 1.07991 * 120.10071 * 0.03758 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2494 5 8 1.6619 -2.0982 1.1921 6 6 2.0396 -2.8855 2.2335 7 6 2.7594 -2.3418 3.2892 8 6 3.1458 -3.1377 4.3514 9 6 2.8141 -4.4771 4.3721 10 6 2.0955 -5.0337 3.3130 11 6 1.7427 -6.4695 3.3293 12 8 1.1125 -6.9510 2.4082 13 7 2.1201 -7.2445 4.3654 14 6 1.7700 -8.6670 4.3818 15 6 2.9601 -9.6013 4.0973 16 7 3.1674 -9.6145 5.5607 17 6 4.2450 -9.8409 6.3746 18 1 4.1593 -9.6856 7.4399 19 6 5.4477 -10.2701 5.8304 20 7 5.5831 -10.3638 4.5245 21 14 6.8744 -10.7146 6.9515 22 1 6.8714 -12.1787 7.1995 23 1 8.1527 -10.3247 6.3042 24 1 6.7330 -9.9936 8.2420 25 6 1.7479 -9.2836 5.7921 26 6 1.7065 -4.2294 2.2414 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6053 -0.2617 2.1370 35 1 3.1262 -0.6443 1.2952 36 1 3.0184 -1.2933 3.2802 37 1 3.7051 -2.7089 5.1698 38 1 3.1140 -5.0952 5.2055 39 1 2.6227 -6.8602 5.1006 40 1 0.8831 -8.8932 3.7899 41 1 2.6707 -10.5683 3.6857 42 1 3.7688 -9.1260 3.5420 43 1 6.4234 -10.6641 4.1444 44 1 1.5907 -8.5553 6.5877 45 1 1.1018 -10.1571 5.8796 46 1 1.1473 -4.6535 1.4207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031367984.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:39 Heat of formation + Delta-G solvation = -0.941344 kcal Electronic energy + Delta-G solvation = -25824.858746 eV Core-core repulsion = 22102.472295 eV Total energy + Delta-G solvation = -3722.386451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.49915 -39.48183 -37.91665 -37.06656 -35.51413 -33.34535 -31.92601 -31.15112 -29.99669 -27.58258 -27.48050 -26.92922 -24.82478 -24.24554 -22.72569 -22.45616 -20.84333 -20.17589 -19.29980 -18.47413 -16.82536 -16.69811 -16.36113 -16.16206 -15.79088 -15.38299 -14.94630 -14.70807 -14.44396 -14.20669 -14.05322 -13.72389 -13.65987 -13.42112 -12.90848 -12.74031 -12.66180 -12.57127 -12.45292 -11.96507 -11.68911 -11.53137 -11.50075 -11.35383 -11.23669 -10.94407 -10.89855 -10.88787 -10.56230 -10.28681 -9.84177 -9.65583 -9.50631 -9.09944 -8.84283 -8.41924 -8.31819 -6.90643 -5.79273 -3.12163 0.82777 1.33512 2.87013 3.04473 3.37108 3.42223 3.44758 3.59318 3.92547 4.34368 4.40793 4.43418 4.65492 4.66362 4.72669 4.91434 5.00879 5.05460 5.08033 5.14402 5.15920 5.25389 5.34717 5.43924 5.45159 5.46581 5.51407 5.58424 5.65324 5.81788 5.87598 5.94540 6.09182 6.13838 6.23745 6.27052 6.31718 6.40324 6.50335 6.55437 6.81550 7.22953 7.24683 7.32178 7.59202 7.93883 7.99938 8.59488 9.01610 9.68411 10.57280 11.37577 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021493 B = 0.002404 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.420300 B =11643.101404 C =12313.482053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.146 4.146 4 C 0.063 3.937 5 O -0.311 6.311 6 C 0.120 3.880 7 C -0.190 4.190 8 C -0.087 4.087 9 C -0.121 4.121 10 C -0.086 4.086 11 C 0.556 3.444 12 O -0.544 6.544 13 N -0.685 5.685 14 C 0.088 3.912 15 C 0.154 3.846 16 N -0.612 5.612 17 C -0.228 4.228 18 H 0.080 0.920 19 C -0.005 4.005 20 N -0.915 5.915 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.110 3.890 26 C -0.094 4.094 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.403 0.597 40 H 0.091 0.909 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.254 0.746 44 H 0.047 0.953 45 H 0.048 0.952 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.144 22.988 -4.903 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.013 4.013 5 O -0.225 6.225 6 C 0.075 3.925 7 C -0.209 4.209 8 C -0.105 4.105 9 C -0.140 4.140 10 C -0.089 4.089 11 C 0.342 3.658 12 O -0.422 6.422 13 N -0.334 5.334 14 C -0.017 4.017 15 C 0.028 3.972 16 N -0.339 5.339 17 C -0.355 4.355 18 H 0.098 0.902 19 C -0.202 4.202 20 N -0.562 5.562 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.016 4.016 26 C -0.114 4.114 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.239 0.761 40 H 0.109 0.891 41 H 0.056 0.944 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.365 22.492 -5.645 24.652 hybrid contribution 1.376 -0.150 1.169 1.811 sum -6.990 22.341 -4.477 23.833 Atomic orbital electron populations 1.21827 0.94258 1.02753 1.01670 1.21132 0.97069 0.95746 0.97477 1.21784 1.01240 0.94813 1.02500 1.22919 0.99532 0.79631 0.99190 1.86069 1.74379 1.20722 1.41336 1.18789 0.95541 0.90688 0.87526 1.21378 1.03201 1.00755 0.95585 1.20873 0.98529 0.93353 0.97733 1.21326 0.98652 0.95618 0.98376 1.19804 1.00071 0.93661 0.95343 1.18112 0.79599 0.85544 0.82524 1.90743 1.40845 1.74899 1.35755 1.45446 1.55798 1.09502 1.22654 1.22924 0.99618 0.80316 0.98890 1.22687 0.93131 0.94495 0.86902 1.46152 1.02272 1.83103 1.02376 1.18997 0.87820 1.38868 0.89845 0.90230 1.24842 0.98068 1.01413 0.95920 1.69848 1.25379 1.51853 1.09093 0.86163 0.82001 0.78389 0.79571 1.21635 1.21742 1.20580 1.22926 0.88313 0.96427 0.93973 1.20449 1.01450 0.90118 0.99374 0.92492 0.91654 0.92748 0.89942 0.92320 0.91689 0.92353 0.91999 0.91992 0.85390 0.85148 0.85020 0.76056 0.89090 0.94388 0.90861 0.93578 0.93494 0.93483 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.09 37.16 0.34 -0.68 16 2 C -0.10 -0.65 3.16 -90.62 -0.29 -0.94 16 3 C -0.15 -0.72 9.19 37.15 0.34 -0.38 16 4 C 0.06 0.50 4.12 37.16 0.15 0.65 16 5 O -0.31 -3.57 9.67 -19.45 -0.19 -3.76 16 6 C 0.12 1.50 6.68 -39.27 -0.26 1.23 16 7 C -0.19 -2.02 9.03 -39.35 -0.36 -2.37 16 8 C -0.09 -0.94 10.03 -39.67 -0.40 -1.34 16 9 C -0.12 -1.55 9.54 -39.17 -0.37 -1.93 16 10 C -0.09 -1.30 5.87 -104.98 -0.62 -1.92 16 11 C 0.56 10.05 7.77 -12.32 -0.10 9.95 16 12 O -0.54 -11.38 15.97 5.32 0.08 -11.30 16 13 N -0.68 -12.27 5.32 -56.28 -0.30 -12.57 16 14 C 0.09 1.73 4.40 -70.14 -0.31 1.42 16 15 C 0.15 3.70 7.24 -2.84 -0.02 3.68 16 16 N -0.61 -15.24 3.70 -177.89 -0.66 -15.90 16 17 C -0.23 -6.22 10.70 -15.06 -0.16 -6.39 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 20 N -0.92 -27.17 11.51 55.49 0.64 -26.53 16 21 Si 0.91 21.88 29.56 -169.99 -5.02 16.86 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.11 2.17 8.68 -2.97 -0.03 2.15 16 26 C -0.09 -1.37 9.53 -39.02 -0.37 -1.75 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.43 7.65 -51.93 -0.40 0.04 16 35 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 36 H 0.13 1.02 6.28 -52.49 -0.33 0.69 16 37 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.13 1.56 6.40 -52.48 -0.34 1.23 16 39 H 0.40 6.72 6.77 -40.82 -0.28 6.44 16 40 H 0.09 1.73 7.51 -51.93 -0.39 1.34 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.97 7.37 -51.93 -0.38 1.59 16 43 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.14 2.16 7.65 -52.49 -0.40 1.76 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -32.80 380.16 -9.35 -42.15 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.09 Total: 4.16 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -2.54 Total: 1.16 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.32 Total: -55.00 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.10 Total: -15.06 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.80 -9.35 -42.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031367984.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.210 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds