Wall clock time and date at job start Tue Mar 31 2020 13:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47161 * 2 1 4 4 C 1.53011 * 109.47014 * 119.99856 * 2 1 3 5 5 O 1.42900 * 109.46811 * 65.00160 * 4 2 1 6 6 C 1.35907 * 116.99518 * 180.02562 * 5 4 2 7 7 C 1.38857 * 119.98773 * 0.02562 * 6 5 4 8 8 C 1.38245 * 120.23952 * 179.97438 * 7 6 5 9 9 C 1.38001 * 120.20688 * 359.74817 * 8 7 6 10 10 C 1.39563 * 119.96441 * 0.50459 * 9 8 7 11 11 C 1.47865 * 120.11622 * 179.77107 * 10 9 8 12 12 O 1.21552 * 119.99914 * 179.72876 * 11 10 9 13 13 N 1.34776 * 120.00139 * 359.72080 * 11 10 9 14 14 C 1.46502 * 119.99960 * 179.97438 * 13 11 10 15 15 C 1.53952 * 113.73599 * 106.26593 * 14 13 11 16 16 N 1.47808 * 86.03517 * 90.88217 * 15 14 13 17 17 C 1.36933 * 134.45725 * 204.64095 * 16 15 14 18 18 H 1.07996 * 120.00846 * 173.35075 * 17 16 15 19 19 C 1.38814 * 119.99714 * 353.35046 * 17 16 15 20 20 N 1.31625 * 120.00245 * 5.06241 * 19 17 16 21 21 Si 1.86809 * 120.00055 * 185.06239 * 19 17 16 22 22 H 1.48500 * 109.46973 * 94.98689 * 21 19 17 23 23 H 1.48500 * 109.47017 * 214.98741 * 21 19 17 24 24 H 1.48499 * 109.46841 * 334.98626 * 21 19 17 25 25 C 1.47582 * 91.05267 * 24.54774 * 16 15 14 26 26 C 1.38458 * 119.98334 * 180.02562 * 6 5 4 27 27 H 1.09003 * 109.46902 * 60.00678 * 1 2 3 28 28 H 1.09005 * 109.47411 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47434 * 300.00448 * 1 2 3 30 30 H 1.09003 * 109.47581 * 239.99686 * 2 1 3 31 31 H 1.09005 * 109.47346 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47398 * 299.99396 * 3 2 1 33 33 H 1.08997 * 109.47529 * 59.99963 * 3 2 1 34 34 H 1.09000 * 109.46958 * 305.00125 * 4 2 1 35 35 H 1.08991 * 109.46666 * 185.00284 * 4 2 1 36 36 H 1.07999 * 119.87618 * 359.96459 * 7 6 5 37 37 H 1.08001 * 119.89555 * 180.02562 * 8 7 6 38 38 H 1.08006 * 120.01847 * 180.25792 * 9 8 7 39 39 H 0.96996 * 119.99562 * 0.02562 * 13 11 10 40 40 H 1.09000 * 112.94445 * 334.67371 * 14 13 11 41 41 H 1.09004 * 113.76381 * 205.14881 * 15 14 13 42 42 H 1.09003 * 113.76793 * 336.54093 * 15 14 13 43 43 H 0.96995 * 119.99775 * 180.02562 * 20 19 17 44 44 H 1.08997 * 113.76639 * 221.14963 * 25 16 15 45 45 H 1.08998 * 113.76570 * 89.75452 * 25 16 15 46 46 H 1.07991 * 120.10071 * 0.03758 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2494 5 8 1.6619 -2.0982 1.1921 6 6 2.0396 -2.8855 2.2335 7 6 2.7594 -2.3418 3.2892 8 6 3.1458 -3.1377 4.3514 9 6 2.8141 -4.4771 4.3721 10 6 2.0955 -5.0337 3.3130 11 6 1.7427 -6.4695 3.3293 12 8 1.1125 -6.9510 2.4082 13 7 2.1201 -7.2445 4.3654 14 6 1.7700 -8.6670 4.3818 15 6 2.9601 -9.6013 4.0973 16 7 3.1674 -9.6145 5.5607 17 6 4.2450 -9.8409 6.3746 18 1 4.1593 -9.6856 7.4399 19 6 5.4477 -10.2701 5.8304 20 7 5.5831 -10.3638 4.5245 21 14 6.8744 -10.7146 6.9515 22 1 6.8714 -12.1787 7.1995 23 1 8.1527 -10.3247 6.3042 24 1 6.7330 -9.9936 8.2420 25 6 1.7479 -9.2836 5.7921 26 6 1.7065 -4.2294 2.2414 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6053 -0.2617 2.1370 35 1 3.1262 -0.6443 1.2952 36 1 3.0184 -1.2933 3.2802 37 1 3.7051 -2.7089 5.1698 38 1 3.1140 -5.0952 5.2055 39 1 2.6227 -6.8602 5.1006 40 1 0.8831 -8.8932 3.7899 41 1 2.6707 -10.5683 3.6857 42 1 3.7688 -9.1260 3.5420 43 1 6.4234 -10.6641 4.1444 44 1 1.5907 -8.5553 6.5877 45 1 1.1018 -10.1571 5.8796 46 1 1.1473 -4.6535 1.4207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031367984.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:39 Heat of formation + Delta-G solvation = -21.182418 kcal Electronic energy + Delta-G solvation = -25825.736465 eV Core-core repulsion = 22102.472295 eV Total energy + Delta-G solvation = -3723.264170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.57992 -40.75862 -39.33622 -38.26371 -36.14954 -35.02944 -33.79084 -32.19711 -31.03616 -29.40448 -28.04993 -27.57238 -26.60849 -25.68609 -24.30114 -23.42871 -21.87021 -20.98911 -20.98436 -19.59118 -18.74592 -17.75627 -17.32175 -17.14943 -16.96065 -16.77940 -16.56428 -15.97166 -15.63108 -15.52720 -15.19529 -14.89207 -14.72231 -14.55058 -14.31865 -14.07780 -13.67292 -13.45302 -13.27056 -13.19918 -12.99897 -12.83880 -12.81339 -12.37201 -12.30031 -12.17874 -12.13085 -12.01894 -11.72461 -11.58894 -11.51466 -11.39619 -11.14510 -10.87484 -10.18927 -9.91533 -9.28377 -8.93465 -7.89944 -5.23908 -0.23713 0.37656 1.46402 1.48686 1.57294 1.78900 1.94279 2.34933 2.47744 2.81330 3.25435 3.41467 3.61080 3.74088 3.84865 3.86145 3.90606 4.05245 4.10556 4.16802 4.25714 4.44384 4.45065 4.49929 4.54949 4.60516 4.68153 4.79662 4.80468 4.87705 4.89008 4.99336 5.02145 5.07937 5.18661 5.22114 5.24772 5.28158 5.34856 5.38052 5.40835 5.48770 5.61611 5.71133 5.90655 6.40706 6.55330 6.90202 7.16295 7.61370 8.55719 9.27213 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021493 B = 0.002404 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.420300 B =11643.101404 C =12313.482053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.141 4.141 4 C 0.054 3.946 5 O -0.328 6.328 6 C 0.117 3.883 7 C -0.176 4.176 8 C -0.078 4.078 9 C -0.124 4.124 10 C -0.106 4.106 11 C 0.555 3.445 12 O -0.581 6.581 13 N -0.681 5.681 14 C 0.109 3.891 15 C 0.149 3.851 16 N -0.634 5.634 17 C -0.229 4.229 18 H 0.092 0.908 19 C -0.069 4.069 20 N -0.954 5.954 21 Si 0.977 3.023 22 H -0.292 1.292 23 H -0.299 1.299 24 H -0.261 1.261 25 C 0.121 3.879 26 C -0.116 4.116 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.140 0.860 39 H 0.411 0.589 40 H 0.099 0.901 41 H 0.025 0.975 42 H 0.035 0.965 43 H 0.246 0.754 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.894 25.847 -2.752 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.199 4.199 4 C -0.021 4.021 5 O -0.242 6.242 6 C 0.072 3.928 7 C -0.195 4.195 8 C -0.096 4.096 9 C -0.143 4.143 10 C -0.109 4.109 11 C 0.343 3.657 12 O -0.462 6.462 13 N -0.330 5.330 14 C 0.003 3.997 15 C 0.022 3.978 16 N -0.362 5.362 17 C -0.357 4.357 18 H 0.109 0.891 19 C -0.262 4.262 20 N -0.603 5.603 21 Si 0.805 3.195 22 H -0.220 1.220 23 H -0.226 1.226 24 H -0.185 1.185 25 C -0.005 4.005 26 C -0.136 4.136 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.181 0.819 37 H 0.185 0.815 38 H 0.158 0.842 39 H 0.248 0.752 40 H 0.117 0.883 41 H 0.043 0.957 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.145 25.383 -3.456 26.881 hybrid contribution 1.233 -0.926 0.451 1.607 sum -6.912 24.457 -3.005 25.591 Atomic orbital electron populations 1.21822 0.94585 1.01567 1.02509 1.21164 0.96820 0.96824 0.96623 1.21758 1.01590 0.93268 1.03239 1.23236 1.00544 0.77888 1.00398 1.86071 1.74543 1.22407 1.41193 1.18821 0.95545 0.90033 0.88413 1.21772 1.01139 1.02363 0.94192 1.21287 0.97552 0.92228 0.98527 1.21487 0.98181 0.96926 0.97710 1.19584 1.02441 0.91865 0.97044 1.18624 0.78580 0.86846 0.81624 1.90711 1.42585 1.75936 1.37009 1.45379 1.55905 1.08725 1.23026 1.22600 0.97612 0.80559 0.98946 1.22587 0.93830 0.94804 0.86559 1.46420 1.04169 1.83036 1.02566 1.19445 0.88552 1.37101 0.90627 0.89054 1.25686 1.00968 1.02377 0.97180 1.70058 1.25557 1.53727 1.10974 0.85081 0.78315 0.77720 0.78352 1.21957 1.22571 1.18514 1.23062 0.85535 0.97372 0.94484 1.20380 1.02574 0.91561 0.99090 0.91592 0.93813 0.92015 0.91002 0.91732 0.91131 0.91474 0.90435 0.90693 0.81929 0.81531 0.84236 0.75202 0.88285 0.95743 0.94643 0.94484 0.90888 0.91564 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.09 71.98 0.65 -1.25 16 2 C -0.10 -1.15 3.16 -10.79 -0.03 -1.19 16 3 C -0.14 -1.04 9.19 71.98 0.66 -0.38 16 4 C 0.05 0.74 4.12 71.99 0.30 1.03 16 5 O -0.33 -7.29 9.67 -92.51 -0.89 -8.18 16 6 C 0.12 2.82 6.68 22.47 0.15 2.97 16 7 C -0.18 -3.16 9.03 22.42 0.20 -2.96 16 8 C -0.08 -1.42 10.03 22.22 0.22 -1.20 16 9 C -0.12 -2.99 9.54 22.53 0.21 -2.78 16 10 C -0.11 -3.26 5.87 -20.10 -0.12 -3.38 16 11 C 0.55 20.63 7.77 86.79 0.67 21.30 16 12 O -0.58 -25.47 15.97 -3.88 -0.06 -25.54 16 13 N -0.68 -24.47 5.32 -450.25 -2.40 -26.87 16 14 C 0.11 4.29 4.40 46.75 0.21 4.50 16 15 C 0.15 7.38 7.24 86.44 0.63 8.01 16 16 N -0.63 -31.51 3.70 -716.71 -2.65 -34.16 16 17 C -0.23 -12.39 10.70 84.03 0.90 -11.49 16 18 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 19 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 20 N -0.95 -58.38 11.51 21.65 0.25 -58.13 16 21 Si 0.98 45.18 29.56 68.60 2.03 47.21 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 25 C 0.12 4.56 8.68 86.48 0.75 5.31 16 26 C -0.12 -3.49 9.53 22.63 0.22 -3.27 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.04 0.74 7.82 -2.38 -0.02 0.73 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 0.41 8.14 -2.38 -0.02 0.40 16 32 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.08 0.83 7.65 -2.39 -0.02 0.81 16 35 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 36 H 0.16 1.78 6.28 -2.91 -0.02 1.76 16 37 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.14 3.06 6.40 -2.91 -0.02 3.05 16 39 H 0.41 13.41 6.77 -92.71 -0.63 12.79 16 40 H 0.10 3.77 7.51 -2.39 -0.02 3.75 16 41 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.04 2.00 7.37 -2.39 -0.02 1.99 16 43 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 44 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.12 4.05 7.65 -2.92 -0.02 4.03 16 Total: -1.00 -73.53 380.16 2.71 -70.82 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.35 Total: 23.06 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 6.09 Total: 11.78 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -4.80 Total: -119.15 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.96 Total: -33.72 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -73.53 2.71 -70.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031367984.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.637 kcal (2) G-P(sol) polarization free energy of solvation -73.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds