Wall clock time and date at job start Tue Mar 31 2020 12:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46830 * 2 1 4 4 C 1.53001 * 109.47114 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47544 * 179.97438 * 4 3 2 6 6 C 1.37092 * 119.99990 * 270.00290 * 5 4 3 7 7 H 1.08003 * 119.99635 * 145.34100 * 6 5 4 8 8 C 1.38949 * 120.00299 * 325.34474 * 6 5 4 9 9 N 1.31408 * 119.99729 * 337.20942 * 8 6 5 10 10 Si 1.86802 * 120.00212 * 157.21266 * 8 6 5 11 11 H 1.48502 * 109.46965 * 59.99952 * 10 8 6 12 12 H 1.48499 * 109.47086 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46734 * 299.99894 * 10 8 6 14 14 C 1.34778 * 119.99517 * 89.99900 * 5 4 3 15 15 O 1.21285 * 120.00443 * 4.88511 * 14 5 4 16 16 C 1.50699 * 119.99550 * 184.88793 * 14 5 4 17 17 N 1.46502 * 109.46847 * 179.72224 * 16 14 5 18 18 C 1.34777 * 119.99714 * 179.97438 * 17 16 14 19 19 O 1.21555 * 120.00316 * 0.02562 * 18 17 16 20 20 C 1.47850 * 120.00040 * 180.02562 * 18 17 16 21 21 C 1.39570 * 120.14566 * 180.02562 * 20 18 17 22 22 C 1.37959 * 119.85325 * 180.29932 * 21 20 18 23 23 C 1.38362 * 120.14239 * 359.44111 * 22 21 20 24 24 C 1.50701 * 119.85404 * 180.30607 * 23 22 21 25 25 C 1.38356 * 120.29321 * 0.55716 * 23 22 21 26 26 C 1.37962 * 120.14411 * 359.72299 * 25 23 22 27 27 H 1.08997 * 109.47635 * 60.00180 * 1 2 3 28 28 H 1.09004 * 109.47293 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47608 * 299.99787 * 1 2 3 30 30 H 1.08998 * 109.47339 * 239.99488 * 2 1 3 31 31 H 1.09004 * 109.47006 * 119.99624 * 2 1 3 32 32 H 1.09002 * 109.47210 * 59.99957 * 3 2 1 33 33 H 1.09002 * 109.47530 * 299.99688 * 3 2 1 34 34 H 1.09002 * 109.46954 * 60.00001 * 4 3 2 35 35 H 1.09004 * 109.47027 * 299.99811 * 4 3 2 36 36 H 0.96998 * 120.00095 * 185.00776 * 9 8 6 37 37 H 1.08995 * 109.47595 * 59.72115 * 16 14 5 38 38 H 1.09007 * 109.46970 * 299.71937 * 16 14 5 39 39 H 0.96998 * 120.00173 * 0.02562 * 17 16 14 40 40 H 1.07999 * 120.07649 * 0.02562 * 21 20 18 41 41 H 1.07998 * 119.92785 * 179.72302 * 22 21 20 42 42 H 1.09005 * 109.46688 * 270.25684 * 24 23 22 43 43 H 1.08998 * 109.46956 * 30.25215 * 24 23 22 44 44 H 1.09004 * 109.47176 * 150.25475 * 24 23 22 45 45 H 1.07999 * 119.92826 * 179.69737 * 25 23 22 46 46 H 1.07999 * 120.07598 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2872 3.4694 -1.1875 7 1 4.0979 4.5294 -1.2711 8 6 4.7628 2.7600 -2.2836 9 7 5.4069 1.6286 -2.1047 10 14 4.4866 3.4146 -4.0112 11 1 5.1251 4.7488 -4.1429 12 1 5.0868 2.4797 -4.9966 13 1 3.0289 3.5358 -4.2674 14 6 4.2824 3.4598 1.1670 15 8 4.1652 2.8619 2.2158 16 6 4.6785 4.9137 1.1687 17 7 4.8560 5.3699 2.5495 18 6 5.2136 6.6455 2.7971 19 8 5.3884 7.4177 1.8748 20 6 5.3933 7.1058 4.1906 21 6 5.7630 8.4263 4.4505 22 6 5.9351 8.8477 5.7528 23 6 5.7306 7.9675 6.8006 24 6 5.9137 8.4366 8.2210 25 6 5.3639 6.6571 6.5499 26 6 5.1942 6.2214 5.2520 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6765 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9336 0.9286 -0.8891 35 1 3.9329 0.9289 0.8909 36 1 5.8019 1.1703 -2.8629 37 1 3.8977 5.5037 0.6887 38 1 5.6139 5.0361 0.6225 39 1 4.7169 4.7536 3.2856 40 1 5.9184 9.1156 3.6337 41 1 6.2255 9.8680 5.9551 42 1 6.9487 8.2798 8.5248 43 1 5.6723 9.4974 8.2872 44 1 5.2525 7.8717 8.8783 45 1 5.2107 5.9738 7.3721 46 1 4.9083 5.1983 5.0575 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144875332.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:40 Heat of formation + Delta-G solvation = -62.556438 kcal Electronic energy + Delta-G solvation = -26029.974409 eV Core-core repulsion = 22304.916127 eV Total energy + Delta-G solvation = -3725.058282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.10053 -38.90281 -38.08391 -35.60634 -34.00961 -33.95114 -32.90928 -31.62249 -31.04699 -29.11977 -27.91171 -26.26297 -24.97923 -22.94266 -22.72567 -22.01352 -20.48918 -20.02702 -19.32470 -18.27503 -16.71524 -16.10824 -15.64925 -15.31372 -15.21318 -14.85675 -14.76661 -14.75122 -14.34234 -14.09667 -13.94728 -13.81008 -13.63343 -13.23109 -13.07423 -12.46710 -12.38530 -12.28999 -12.17101 -12.00025 -11.70199 -11.67090 -11.45834 -11.23673 -11.09839 -10.97280 -10.63311 -10.54719 -10.39635 -10.29661 -9.80200 -9.70335 -9.23189 -9.08329 -8.88148 -8.62791 -8.58542 -7.61754 -6.47673 -4.14821 0.82387 1.28979 2.99731 3.08708 3.17747 3.20242 3.44094 3.71532 3.89641 4.05017 4.61411 4.64472 4.69182 4.84170 4.88763 5.01073 5.14226 5.27995 5.33431 5.44460 5.46878 5.52671 5.57028 5.62077 5.83725 5.90466 5.95525 6.06039 6.12964 6.20941 6.22217 6.29495 6.33309 6.36291 6.37224 6.40176 6.52546 6.66733 6.73797 6.77600 6.82108 7.05969 7.28767 7.44392 7.79742 7.90775 8.25868 8.51731 8.94717 9.34719 9.77412 10.53467 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014567 B = 0.002950 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.689455 B = 9490.326537 C =10920.899506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.109 3.891 5 N -0.425 5.425 6 C -0.353 4.353 7 H 0.094 0.906 8 C 0.050 3.950 9 N -0.854 5.854 10 Si 0.916 3.084 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.458 3.542 15 O -0.610 6.610 16 C 0.118 3.882 17 N -0.706 5.706 18 C 0.553 3.447 19 O -0.545 6.545 20 C -0.132 4.132 21 C -0.058 4.058 22 C -0.132 4.132 23 C -0.068 4.068 24 C -0.117 4.117 25 C -0.129 4.129 26 C -0.080 4.080 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.056 0.944 36 H 0.273 0.727 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.407 0.593 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.127 0.873 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.974 6.626 12.570 14.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.165 4.165 4 C -0.014 4.014 5 N -0.142 5.142 6 C -0.480 4.480 7 H 0.112 0.888 8 C -0.157 4.157 9 N -0.490 5.490 10 Si 0.742 3.258 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.196 1.196 14 C 0.247 3.753 15 O -0.497 6.497 16 C -0.008 4.008 17 N -0.360 5.360 18 C 0.339 3.661 19 O -0.424 6.424 20 C -0.135 4.135 21 C -0.077 4.077 22 C -0.150 4.150 23 C -0.069 4.069 24 C -0.173 4.173 25 C -0.147 4.147 26 C -0.099 4.099 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.246 0.754 40 H 0.154 0.846 41 H 0.145 0.855 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.145 0.855 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.875 6.624 12.229 14.034 hybrid contribution -0.130 -0.072 -0.744 0.759 sum -2.005 6.552 11.485 13.374 Atomic orbital electron populations 1.21756 0.96597 1.00721 1.01499 1.21425 0.95008 0.97649 1.01658 1.21890 0.97685 0.95584 1.01361 1.21531 0.91304 0.84585 1.03991 1.43378 1.54366 1.12174 1.04273 1.19458 1.46194 0.95127 0.87268 0.88840 1.25341 0.94138 0.95865 1.00389 1.69842 1.29567 1.17186 1.32380 0.86170 0.79142 0.79029 0.81501 1.19461 1.20826 1.19606 1.20183 0.81665 0.88836 0.84658 1.90490 1.59043 1.68272 1.31917 1.20937 1.03465 0.94256 0.82173 1.45758 1.68876 1.11374 1.09949 1.18219 0.77338 0.82020 0.88480 1.90755 1.51628 1.54386 1.45660 1.20016 1.05238 0.95320 0.92969 1.21273 0.94680 0.94604 0.97108 1.21002 1.02202 0.99851 0.91955 1.20130 0.97014 0.93815 0.95910 1.20844 1.02427 1.01705 0.92362 1.20983 1.01563 0.95528 0.96638 1.21444 0.96712 0.99442 0.92312 0.92996 0.93382 0.93107 0.92168 0.92398 0.93129 0.92122 0.87269 0.92549 0.91649 0.89610 0.88664 0.75441 0.84610 0.85528 0.90900 0.91387 0.91340 0.85474 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.95 5.93 -26.73 -0.16 -2.11 16 3 C -0.13 -2.50 5.54 -26.73 -0.15 -2.65 16 4 C 0.11 2.52 5.05 -4.04 -0.02 2.50 16 5 N -0.43 -10.38 2.54 -114.81 -0.29 -10.67 16 6 C -0.35 -8.73 8.69 -14.94 -0.13 -8.86 16 7 H 0.09 2.23 7.01 -52.48 -0.37 1.86 16 8 C 0.05 1.23 4.95 -17.47 -0.09 1.14 16 9 N -0.85 -21.89 11.34 55.50 0.63 -21.26 16 10 Si 0.92 19.14 29.61 -169.99 -5.03 14.10 16 11 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 12 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 13 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 14 C 0.46 10.80 7.70 -10.99 -0.08 10.71 16 15 O -0.61 -15.03 15.22 5.55 0.08 -14.94 16 16 C 0.12 2.47 4.76 -5.19 -0.02 2.44 16 17 N -0.71 -13.08 5.48 -62.43 -0.34 -13.42 16 18 C 0.55 10.00 7.77 -12.33 -0.10 9.91 16 19 O -0.55 -11.42 16.35 5.32 0.09 -11.34 16 20 C -0.13 -1.95 5.87 -104.97 -0.62 -2.57 16 21 C -0.06 -0.75 9.60 -39.19 -0.38 -1.13 16 22 C -0.13 -1.39 9.68 -39.64 -0.38 -1.77 16 23 C -0.07 -0.67 5.89 -104.53 -0.62 -1.29 16 24 C -0.12 -0.78 10.00 36.01 0.36 -0.42 16 25 C -0.13 -1.36 9.68 -39.64 -0.38 -1.75 16 26 C -0.08 -1.02 9.54 -39.18 -0.37 -1.39 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.11 2.68 5.36 -51.93 -0.28 2.40 16 35 H 0.06 1.35 7.36 -51.93 -0.38 0.97 16 36 H 0.27 6.62 8.32 -40.82 -0.34 6.28 16 37 H 0.09 1.77 7.78 -51.93 -0.40 1.36 16 38 H 0.10 2.08 8.05 -51.93 -0.42 1.67 16 39 H 0.41 7.14 5.47 -40.82 -0.22 6.91 16 40 H 0.14 1.77 7.65 -52.49 -0.40 1.36 16 41 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 44 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 45 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.13 1.57 6.41 -52.49 -0.34 1.23 16 LS Contribution 383.24 15.07 5.78 5.78 Total: -1.00 -29.34 383.24 -8.87 -38.21 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -7.01 Total: 12.45 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -2.77 Total: 1.09 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.00 Total: -45.36 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: 0.17 Total: -26.28 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.34 -8.87 -38.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144875332.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.344 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds