Wall clock time and date at job start Tue Mar 31 2020 12:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46830 * 2 1 4 4 C 1.53001 * 109.47114 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47544 * 179.97438 * 4 3 2 6 6 C 1.37092 * 119.99990 * 270.00290 * 5 4 3 7 7 H 1.08003 * 119.99635 * 145.34100 * 6 5 4 8 8 C 1.38949 * 120.00299 * 325.34474 * 6 5 4 9 9 N 1.31408 * 119.99729 * 337.20942 * 8 6 5 10 10 Si 1.86802 * 120.00212 * 157.21266 * 8 6 5 11 11 H 1.48502 * 109.46965 * 59.99952 * 10 8 6 12 12 H 1.48499 * 109.47086 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46734 * 299.99894 * 10 8 6 14 14 C 1.34778 * 119.99517 * 89.99900 * 5 4 3 15 15 O 1.21285 * 120.00443 * 4.88511 * 14 5 4 16 16 C 1.50699 * 119.99550 * 184.88793 * 14 5 4 17 17 N 1.46502 * 109.46847 * 179.72224 * 16 14 5 18 18 C 1.34777 * 119.99714 * 179.97438 * 17 16 14 19 19 O 1.21555 * 120.00316 * 0.02562 * 18 17 16 20 20 C 1.47850 * 120.00040 * 180.02562 * 18 17 16 21 21 C 1.39570 * 120.14566 * 180.02562 * 20 18 17 22 22 C 1.37959 * 119.85325 * 180.29932 * 21 20 18 23 23 C 1.38362 * 120.14239 * 359.44111 * 22 21 20 24 24 C 1.50701 * 119.85404 * 180.30607 * 23 22 21 25 25 C 1.38356 * 120.29321 * 0.55716 * 23 22 21 26 26 C 1.37962 * 120.14411 * 359.72299 * 25 23 22 27 27 H 1.08997 * 109.47635 * 60.00180 * 1 2 3 28 28 H 1.09004 * 109.47293 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47608 * 299.99787 * 1 2 3 30 30 H 1.08998 * 109.47339 * 239.99488 * 2 1 3 31 31 H 1.09004 * 109.47006 * 119.99624 * 2 1 3 32 32 H 1.09002 * 109.47210 * 59.99957 * 3 2 1 33 33 H 1.09002 * 109.47530 * 299.99688 * 3 2 1 34 34 H 1.09002 * 109.46954 * 60.00001 * 4 3 2 35 35 H 1.09004 * 109.47027 * 299.99811 * 4 3 2 36 36 H 0.96998 * 120.00095 * 185.00776 * 9 8 6 37 37 H 1.08995 * 109.47595 * 59.72115 * 16 14 5 38 38 H 1.09007 * 109.46970 * 299.71937 * 16 14 5 39 39 H 0.96998 * 120.00173 * 0.02562 * 17 16 14 40 40 H 1.07999 * 120.07649 * 0.02562 * 21 20 18 41 41 H 1.07998 * 119.92785 * 179.72302 * 22 21 20 42 42 H 1.09005 * 109.46688 * 270.25684 * 24 23 22 43 43 H 1.08998 * 109.46956 * 30.25215 * 24 23 22 44 44 H 1.09004 * 109.47176 * 150.25475 * 24 23 22 45 45 H 1.07999 * 119.92826 * 179.69737 * 25 23 22 46 46 H 1.07999 * 120.07598 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2872 3.4694 -1.1875 7 1 4.0979 4.5294 -1.2711 8 6 4.7628 2.7600 -2.2836 9 7 5.4069 1.6286 -2.1047 10 14 4.4866 3.4146 -4.0112 11 1 5.1251 4.7488 -4.1429 12 1 5.0868 2.4797 -4.9966 13 1 3.0289 3.5358 -4.2674 14 6 4.2824 3.4598 1.1670 15 8 4.1652 2.8619 2.2158 16 6 4.6785 4.9137 1.1687 17 7 4.8560 5.3699 2.5495 18 6 5.2136 6.6455 2.7971 19 8 5.3884 7.4177 1.8748 20 6 5.3933 7.1058 4.1906 21 6 5.7630 8.4263 4.4505 22 6 5.9351 8.8477 5.7528 23 6 5.7306 7.9675 6.8006 24 6 5.9137 8.4366 8.2210 25 6 5.3639 6.6571 6.5499 26 6 5.1942 6.2214 5.2520 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6765 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9336 0.9286 -0.8891 35 1 3.9329 0.9289 0.8909 36 1 5.8019 1.1703 -2.8629 37 1 3.8977 5.5037 0.6887 38 1 5.6139 5.0361 0.6225 39 1 4.7169 4.7536 3.2856 40 1 5.9184 9.1156 3.6337 41 1 6.2255 9.8680 5.9551 42 1 6.9487 8.2798 8.5248 43 1 5.6723 9.4974 8.2872 44 1 5.2525 7.8717 8.8783 45 1 5.2107 5.9738 7.3721 46 1 4.9083 5.1983 5.0575 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144875332.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:40 Heat of formation + Delta-G solvation = -78.241858 kcal Electronic energy + Delta-G solvation = -26030.654580 eV Core-core repulsion = 22304.916127 eV Total energy + Delta-G solvation = -3725.738453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.42913 -40.52471 -39.39001 -37.37217 -35.63338 -35.49606 -33.82268 -33.51659 -31.97521 -30.63952 -29.10351 -27.54501 -26.82161 -24.37716 -23.65807 -23.17789 -21.97098 -21.35077 -21.16220 -19.71989 -18.41095 -17.71990 -17.20358 -16.86893 -16.47373 -16.34986 -16.19275 -16.00946 -15.70363 -15.63238 -15.40201 -14.74119 -14.60617 -14.48507 -14.38359 -14.03751 -13.80851 -13.68079 -13.44536 -13.14817 -13.00015 -12.96185 -12.82626 -12.70925 -12.56162 -12.18247 -12.07869 -11.98218 -11.95105 -11.85036 -11.44219 -11.17816 -11.07757 -10.53442 -10.31618 -9.98455 -9.66839 -9.53603 -8.37452 -6.11142 -0.18914 0.39321 1.38709 1.47054 1.55293 1.76072 1.86164 1.95500 2.29924 2.84002 2.90250 2.99465 3.63116 3.82429 3.97750 4.00363 4.03396 4.09623 4.25026 4.32053 4.37671 4.40739 4.42811 4.52362 4.56979 4.75457 4.81325 4.83058 4.86338 4.89234 4.98785 5.04407 5.06869 5.17654 5.18686 5.24118 5.33300 5.35268 5.38470 5.41796 5.44129 5.56903 5.58316 5.92099 5.94661 6.33048 6.44913 7.01598 7.06071 7.44195 7.86059 8.64276 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014567 B = 0.002950 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.689455 B = 9490.326537 C =10920.899506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.114 4.114 4 C 0.110 3.890 5 N -0.436 5.436 6 C -0.370 4.370 7 H 0.097 0.903 8 C 0.013 3.987 9 N -0.883 5.883 10 Si 0.980 3.020 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.264 1.264 14 C 0.450 3.550 15 O -0.625 6.625 16 C 0.131 3.869 17 N -0.704 5.704 18 C 0.552 3.448 19 O -0.582 6.582 20 C -0.161 4.161 21 C -0.069 4.069 22 C -0.130 4.130 23 C -0.058 4.058 24 C -0.116 4.116 25 C -0.130 4.130 26 C -0.086 4.086 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.040 0.960 36 H 0.276 0.724 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.412 0.588 40 H 0.128 0.872 41 H 0.156 0.844 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.154 0.846 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 7.396 14.102 16.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.153 4.153 4 C -0.013 4.013 5 N -0.152 5.152 6 C -0.498 4.498 7 H 0.115 0.885 8 C -0.192 4.192 9 N -0.519 5.519 10 Si 0.803 3.197 11 H -0.192 1.192 12 H -0.205 1.205 13 H -0.189 1.189 14 C 0.239 3.761 15 O -0.514 6.514 16 C 0.004 3.996 17 N -0.358 5.358 18 C 0.342 3.658 19 O -0.463 6.463 20 C -0.164 4.164 21 C -0.088 4.088 22 C -0.147 4.147 23 C -0.058 4.058 24 C -0.172 4.172 25 C -0.148 4.148 26 C -0.105 4.105 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.251 0.749 40 H 0.146 0.854 41 H 0.174 0.826 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.172 0.828 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.520 7.388 13.786 15.842 hybrid contribution 0.131 -0.298 -1.084 1.131 sum -2.389 7.090 12.702 14.742 Atomic orbital electron populations 1.21713 0.94173 1.02371 1.01781 1.21407 0.97086 0.95038 1.01842 1.21766 0.95095 0.97926 1.00501 1.21528 0.93519 0.83928 1.02336 1.43622 1.54441 1.12620 1.04557 1.19728 1.46765 0.95587 0.87675 0.88495 1.26129 0.93384 0.96004 1.03644 1.69934 1.30213 1.18295 1.33490 0.85186 0.79181 0.78391 0.76898 1.19166 1.20451 1.18925 1.20567 0.81389 0.89760 0.84352 1.90459 1.59719 1.68913 1.32296 1.20656 1.02618 0.92682 0.83652 1.45712 1.69242 1.11907 1.08952 1.18813 0.75979 0.81182 0.89851 1.90717 1.53324 1.55105 1.47188 1.19831 1.08681 0.96705 0.91188 1.21357 0.95219 0.93829 0.98387 1.21324 1.01207 1.01402 0.90792 1.20596 0.94472 0.93208 0.97572 1.20939 1.03542 1.02746 0.90005 1.21328 1.00668 0.96535 0.96247 1.21519 0.96909 0.99166 0.92894 0.92730 0.91059 0.92846 0.92079 0.92164 0.93982 0.92766 0.88680 0.94171 0.91380 0.89526 0.89979 0.74857 0.85426 0.82649 0.89605 0.89957 0.90051 0.82793 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.91 71.98 0.71 -2.97 16 2 C -0.12 -3.71 5.93 30.59 0.18 -3.53 16 3 C -0.11 -4.57 5.54 30.59 0.17 -4.40 16 4 C 0.11 5.24 5.05 86.38 0.44 5.68 16 5 N -0.44 -21.97 2.54 -635.53 -1.61 -23.58 16 6 C -0.37 -18.72 8.69 84.04 0.73 -17.99 16 7 H 0.10 4.73 7.01 -2.91 -0.02 4.71 16 8 C 0.01 0.65 4.95 84.93 0.42 1.07 16 9 N -0.88 -46.02 11.34 21.66 0.25 -45.77 16 10 Si 0.98 39.24 29.61 68.60 2.03 41.27 16 11 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 12 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 13 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 14 C 0.45 21.99 7.70 87.66 0.67 22.67 16 15 O -0.62 -31.76 15.22 -3.05 -0.05 -31.81 16 16 C 0.13 5.72 4.76 85.63 0.41 6.13 16 17 N -0.70 -27.22 5.48 -469.69 -2.57 -29.79 16 18 C 0.55 20.86 7.77 86.79 0.67 21.53 16 19 O -0.58 -25.52 16.35 -3.89 -0.06 -25.58 16 20 C -0.16 -4.83 5.87 -20.09 -0.12 -4.95 16 21 C -0.07 -1.79 9.60 22.53 0.22 -1.57 16 22 C -0.13 -2.43 9.68 22.23 0.22 -2.21 16 23 C -0.06 -0.96 5.89 -19.81 -0.12 -1.08 16 24 C -0.12 -1.07 10.00 71.24 0.71 -0.35 16 25 C -0.13 -2.44 9.68 22.23 0.22 -2.23 16 26 C -0.09 -2.14 9.54 22.53 0.21 -1.92 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.10 4.82 5.36 -2.39 -0.01 4.81 16 35 H 0.04 1.99 7.36 -2.39 -0.02 1.97 16 36 H 0.28 13.53 8.32 -92.71 -0.77 12.76 16 37 H 0.09 3.73 7.78 -2.39 -0.02 3.72 16 38 H 0.08 3.79 8.05 -2.38 -0.02 3.77 16 39 H 0.41 15.01 5.47 -92.71 -0.51 14.51 16 40 H 0.13 3.43 7.65 -2.91 -0.02 3.40 16 41 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 42 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 44 H 0.08 0.59 8.08 -2.38 -0.02 0.57 16 45 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 46 H 0.13 3.14 6.41 -2.91 -0.02 3.12 16 Total: -1.00 -64.89 383.24 4.20 -60.69 By element: Atomic # 1 Polarization: 40.23 SS G_CDS: 0.47 Total: 40.70 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 5.75 Total: 13.88 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -3.94 Total: -99.15 kcal Atomic # 8 Polarization: -57.28 SS G_CDS: -0.11 Total: -57.39 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -64.89 4.20 -60.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144875332.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.549 kcal (2) G-P(sol) polarization free energy of solvation -64.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds