Wall clock time and date at job start Tue Mar 31 2020 13:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46791 * 2 1 4 4 C 1.52999 * 109.46580 * 180.02562 * 3 2 1 5 5 O 1.45206 * 109.46773 * 180.02562 * 4 3 2 6 6 C 1.34230 * 117.00149 * 179.97438 * 5 4 3 7 7 O 1.20828 * 119.99827 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00266 * 179.97438 * 6 5 4 9 9 H 1.09007 * 110.64316 * 61.69565 * 8 6 5 10 10 C 1.54598 * 110.72503 * 298.55210 * 8 6 5 11 11 C 1.53996 * 105.13807 * 219.68201 * 10 8 6 12 12 N 1.47896 * 107.05796 * 358.77437 * 11 10 8 13 13 C 1.39085 * 111.00381 * 145.84510 * 12 11 10 14 14 C 1.38749 * 119.65280 * 300.12667 * 13 12 11 15 15 C 1.40775 * 118.66537 * 179.97438 * 14 13 12 16 16 C 1.41554 * 120.99236 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99866 * 23.18836 * 16 15 14 18 18 C 1.40027 * 120.00209 * 203.18392 * 16 15 14 19 19 N 1.30747 * 119.99712 * 17.29564 * 18 16 15 20 20 Si 1.86798 * 120.00293 * 197.29823 * 18 16 15 21 21 H 1.48495 * 109.47288 * 89.99976 * 20 18 16 22 22 H 1.48500 * 109.46979 * 210.00490 * 20 18 16 23 23 H 1.48501 * 109.46643 * 329.99934 * 20 18 16 24 24 C 1.41189 * 118.01761 * 359.97438 * 15 14 13 25 25 C 1.36557 * 119.14499 * 0.02562 * 24 15 14 26 26 N 1.32103 * 121.26832 * 359.71701 * 25 24 15 27 27 C 1.48534 * 105.82261 * 25.32711 * 12 11 10 28 28 H 1.09000 * 109.46982 * 60.00207 * 1 2 3 29 29 H 1.08999 * 109.46517 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46940 * 299.99762 * 1 2 3 31 31 H 1.09003 * 109.46956 * 240.00343 * 2 1 3 32 32 H 1.09000 * 109.46982 * 119.99793 * 2 1 3 33 33 H 1.09003 * 109.47091 * 60.00425 * 3 2 1 34 34 H 1.09000 * 109.47188 * 299.99666 * 3 2 1 35 35 H 1.09002 * 109.47474 * 299.99390 * 4 3 2 36 36 H 1.08992 * 109.47565 * 60.00506 * 4 3 2 37 37 H 1.08998 * 110.30782 * 338.59415 * 10 8 6 38 38 H 1.08997 * 110.30907 * 100.66853 * 10 8 6 39 39 H 1.08999 * 109.91432 * 118.12707 * 11 10 8 40 40 H 1.08995 * 109.91631 * 239.22222 * 11 10 8 41 41 H 1.07999 * 120.66795 * 0.02562 * 14 13 12 42 42 H 0.97000 * 119.99906 * 180.02562 * 19 18 16 43 43 H 1.08003 * 120.42920 * 179.97438 * 24 15 14 44 44 H 1.07997 * 119.36935 * 180.02562 * 25 24 15 45 45 H 1.09003 * 110.66721 * 202.35901 * 27 12 11 46 46 H 1.09006 * 110.66276 * 79.22899 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0540 2.8116 0.0000 6 6 5.3847 2.9875 0.0000 7 8 6.1208 2.0293 0.0001 8 6 5.9607 4.3800 0.0001 9 1 5.6606 4.9200 0.8982 10 6 5.5312 5.1497 -1.2700 11 6 6.7778 5.9461 -1.6984 12 7 7.8363 5.6624 -0.7052 13 6 9.0910 5.6449 -1.3051 14 6 9.3540 4.7361 -2.3201 15 6 10.6308 4.7369 -2.9131 16 6 10.9525 3.8308 -3.9519 17 1 10.1670 3.3988 -4.5542 18 6 12.2892 3.4946 -4.1987 19 7 13.2008 3.7302 -3.2915 20 14 12.7702 2.7096 -5.8241 21 1 13.1156 3.7711 -6.8034 22 1 13.9448 1.8248 -5.6181 23 1 11.6322 1.9088 -6.3428 24 6 11.5808 5.6685 -2.4408 25 6 11.2303 6.5249 -1.4366 26 7 10.0209 6.5005 -0.9055 27 6 7.5041 4.3350 -0.1273 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9338 0.9287 0.8892 36 1 3.9330 0.9290 -0.8908 37 1 5.2401 4.4518 -2.0550 38 1 4.7080 5.8267 -1.0419 39 1 7.1016 5.6247 -2.6883 40 1 6.5514 7.0122 -1.7099 41 1 8.5943 4.0426 -2.6491 42 1 14.1268 3.4976 -3.4626 43 1 12.5723 5.7027 -2.8677 44 1 11.9540 7.2392 -1.0728 45 1 7.9676 4.2149 0.8520 46 1 7.8114 3.5346 -0.8004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158540887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:01 Heat of formation + Delta-G solvation = -79.537510 kcal Electronic energy + Delta-G solvation = -26064.345533 eV Core-core repulsion = 22338.550897 eV Total energy + Delta-G solvation = -3725.794636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.96300 -40.90690 -39.04881 -37.83800 -36.06947 -35.93303 -33.68904 -32.68765 -30.73952 -30.11103 -29.57415 -27.90161 -25.64210 -24.22441 -23.45111 -23.09314 -22.13692 -21.88745 -21.17079 -19.58131 -18.67241 -17.99038 -17.85500 -17.24708 -17.12381 -16.48305 -16.26112 -16.10095 -15.71344 -15.23540 -15.12618 -14.70219 -14.54588 -14.39813 -14.27686 -14.22422 -13.68524 -13.22456 -13.13207 -13.08026 -13.05039 -12.91774 -12.82454 -12.70451 -12.48234 -12.24608 -12.05318 -12.00610 -11.89599 -11.87321 -11.76624 -11.43240 -11.38678 -11.32845 -10.36265 -10.06828 -9.46768 -9.32391 -8.75592 -6.65669 0.69701 0.87755 1.05172 1.34187 1.47076 1.48378 1.52167 2.13193 2.64502 2.76951 3.23596 3.44376 3.66489 3.68518 3.86959 3.91316 4.03834 4.17400 4.19936 4.22068 4.29816 4.31919 4.42451 4.56045 4.57966 4.64193 4.75549 4.83683 4.85148 4.86305 4.87839 4.88569 4.94478 4.98854 5.01352 5.11876 5.15712 5.18633 5.30356 5.36537 5.41789 5.44594 5.73988 5.76722 5.95412 6.24248 6.47065 6.62825 6.72084 6.76409 7.70604 8.16605 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.002744 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.105089 B =10202.046091 C =11596.817751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.111 4.111 4 C 0.057 3.943 5 O -0.348 6.348 6 C 0.477 3.523 7 O -0.540 6.540 8 C -0.074 4.074 9 H 0.153 0.847 10 C -0.100 4.100 11 C 0.040 3.960 12 N -0.475 5.475 13 C 0.297 3.703 14 C -0.313 4.313 15 C 0.105 3.895 16 C -0.486 4.486 17 H 0.078 0.922 18 C 0.038 3.962 19 N -0.809 5.809 20 Si 0.990 3.010 21 H -0.256 1.256 22 H -0.264 1.264 23 H -0.260 1.260 24 C -0.230 4.230 25 C 0.091 3.909 26 N -0.568 5.568 27 C 0.062 3.938 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.126 0.874 39 H 0.036 0.964 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.295 0.705 43 H 0.120 0.880 44 H 0.152 0.848 45 H 0.082 0.918 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.080 -3.630 3.470 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.148 4.148 4 C -0.016 4.016 5 O -0.264 6.264 6 C 0.321 3.679 7 O -0.429 6.429 8 C -0.094 4.094 9 H 0.171 0.829 10 C -0.138 4.138 11 C -0.087 4.087 12 N -0.197 5.197 13 C 0.069 3.931 14 C -0.339 4.339 15 C 0.097 3.903 16 C -0.516 4.516 17 H 0.096 0.904 18 C -0.180 4.180 19 N -0.434 5.434 20 Si 0.809 3.191 21 H -0.181 1.181 22 H -0.188 1.188 23 H -0.183 1.183 24 C -0.252 4.252 25 C -0.060 4.060 26 N -0.284 5.284 27 C -0.066 4.066 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.144 0.856 39 H 0.055 0.945 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.138 0.862 44 H 0.169 0.831 45 H 0.100 0.900 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -19.808 -2.938 4.621 20.551 hybrid contribution 1.189 -1.913 -1.852 2.916 sum -18.619 -4.851 2.769 19.439 Atomic orbital electron populations 1.21741 0.94244 1.02353 1.02399 1.21460 0.97117 0.94827 1.02662 1.21599 0.90101 0.98732 1.04367 1.23357 0.96600 0.79296 1.02391 1.86482 1.23124 1.33321 1.83476 1.23682 0.80874 0.92220 0.71119 1.90702 1.61354 1.44242 1.46625 1.21920 0.93493 0.89586 1.04391 0.82906 1.22363 0.97972 0.98838 0.94583 1.23050 0.90134 1.02229 0.93290 1.61584 0.99298 1.27908 1.30944 1.19371 0.90788 0.91760 0.91190 1.22141 0.99917 1.06828 1.04993 1.18138 0.91087 0.90512 0.90560 1.19876 0.93831 1.23378 1.14521 0.90400 1.26893 0.95434 0.94368 1.01288 1.69803 1.03997 1.35578 1.34007 0.85091 0.78724 0.78706 0.76563 1.18070 1.18789 1.18338 1.22008 1.01763 0.98819 1.02601 1.22060 0.92476 0.97559 0.93873 1.67051 1.02180 1.26472 1.32740 1.23064 0.93910 0.89207 1.00399 0.92307 0.91970 0.92131 0.91736 0.91454 0.89981 0.90275 0.91379 0.91903 0.90739 0.85585 0.94500 0.88363 0.88622 0.89369 0.86207 0.83059 0.89976 0.94361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 71.98 0.71 -0.63 16 2 C -0.12 -1.36 5.93 30.60 0.18 -1.18 16 3 C -0.11 -1.44 5.59 30.60 0.17 -1.27 16 4 C 0.06 1.10 5.47 71.98 0.39 1.49 16 5 O -0.35 -7.86 10.20 -51.42 -0.52 -8.39 16 6 C 0.48 13.28 7.14 71.23 0.51 13.78 16 7 O -0.54 -19.27 15.53 21.96 0.34 -18.93 16 8 C -0.07 -1.91 3.56 -10.34 -0.04 -1.95 16 9 H 0.15 3.04 8.14 -2.38 -0.02 3.02 16 10 C -0.10 -2.27 6.48 31.47 0.20 -2.06 16 11 C 0.04 1.25 6.50 86.45 0.56 1.81 16 12 N -0.47 -18.64 5.36 -689.56 -3.70 -22.34 16 13 C 0.30 14.38 5.85 132.90 0.78 15.16 16 14 C -0.31 -16.20 7.68 23.01 0.18 -16.03 16 15 C 0.11 5.85 5.61 -21.12 -0.12 5.73 16 16 C -0.49 -26.28 9.12 23.52 0.21 -26.07 16 17 H 0.08 4.09 7.90 -2.91 -0.02 4.07 16 18 C 0.04 1.89 5.20 85.29 0.44 2.33 16 19 N -0.81 -41.35 10.90 21.84 0.24 -41.11 16 20 Si 0.99 37.22 29.59 68.60 2.03 39.25 16 21 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 22 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 23 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 24 C -0.23 -12.25 8.75 22.60 0.20 -12.05 16 25 C 0.09 4.49 11.10 84.26 0.94 5.43 16 26 N -0.57 -28.66 10.37 -194.46 -2.02 -30.68 16 27 C 0.06 2.22 5.43 86.65 0.47 2.69 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.33 8.13 -2.39 -0.02 1.31 16 36 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 37 H 0.07 1.68 7.84 -2.39 -0.02 1.66 16 38 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.04 1.31 6.66 -2.39 -0.02 1.29 16 40 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.10 4.84 7.05 -2.91 -0.02 4.82 16 42 H 0.30 13.43 8.29 -92.71 -0.77 12.66 16 43 H 0.12 6.45 6.16 -2.91 -0.02 6.43 16 44 H 0.15 6.40 8.06 -2.91 -0.02 6.37 16 45 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 46 H 0.04 1.62 6.00 -2.38 -0.01 1.60 16 Total: -1.00 -67.24 376.40 3.13 -64.11 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.97 Total: 30.89 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 5.79 Total: -12.82 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -5.48 Total: -94.12 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.18 Total: -27.32 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Total: -67.24 3.13 -64.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158540887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.424 kcal (2) G-P(sol) polarization free energy of solvation -67.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds