Wall clock time and date at job start Tue Mar 31 2020 13:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32995 * 1 3 3 C 1.50699 * 120.00429 * 2 1 4 4 C 1.47107 * 120.00174 * 179.97438 * 2 1 3 5 5 O 1.21617 * 119.99494 * 0.02562 * 4 2 1 6 6 N 1.34772 * 120.00268 * 179.97438 * 4 2 1 7 7 C 1.46497 * 120.00020 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.47305 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.47355 * 179.97438 * 8 7 6 10 10 N 1.46495 * 109.46865 * 179.97438 * 9 8 7 11 11 C 1.38926 * 119.99921 * 179.97438 * 10 9 8 12 12 C 1.39724 * 119.79372 * 359.97438 * 11 10 9 13 13 C 1.36232 * 120.42652 * 179.71119 * 12 11 10 14 14 C 1.40853 * 120.00903 * 0.56131 * 13 12 11 15 15 C 1.40962 * 120.20512 * 179.73868 * 14 13 12 16 16 H 1.08001 * 120.00581 * 154.36423 * 15 14 13 17 17 C 1.39851 * 119.99501 * 334.36958 * 15 14 13 18 18 N 1.30943 * 120.00136 * 334.60479 * 17 15 14 19 19 Si 1.86805 * 119.99768 * 154.60726 * 17 15 14 20 20 H 1.48501 * 109.46807 * 179.97438 * 19 17 15 21 21 H 1.48491 * 109.47148 * 299.99962 * 19 17 15 22 22 H 1.48500 * 109.47162 * 60.00097 * 19 17 15 23 23 C 1.41478 * 119.59796 * 359.46253 * 14 13 12 24 24 O 1.35673 * 120.21157 * 180.23304 * 23 14 13 25 25 C 1.42897 * 116.99900 * 180.02562 * 24 23 14 26 26 C 1.38039 * 119.57688 * 0.25090 * 23 14 13 27 27 H 1.07999 * 119.99888 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.99645 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47502 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46404 * 299.99766 * 3 2 1 31 31 H 1.08997 * 109.47453 * 59.99221 * 3 2 1 32 32 H 0.97004 * 119.99834 * 0.02562 * 6 4 2 33 33 H 1.08995 * 109.47501 * 59.99857 * 7 6 4 34 34 H 1.09005 * 109.47309 * 299.99941 * 7 6 4 35 35 H 1.09002 * 109.47007 * 59.99667 * 8 7 6 36 36 H 1.09005 * 109.46617 * 300.00032 * 8 7 6 37 37 H 1.08997 * 109.46675 * 60.00176 * 9 8 7 38 38 H 1.08994 * 109.47005 * 300.00245 * 9 8 7 39 39 H 0.97001 * 120.00357 * 0.02562 * 10 9 8 40 40 H 1.07993 * 119.78869 * 359.97438 * 12 11 10 41 41 H 1.07999 * 119.99367 * 180.29846 * 13 12 11 42 42 H 0.97005 * 120.00308 * 354.19396 * 18 17 15 43 43 H 1.09003 * 109.46883 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.46666 * 299.99708 * 25 24 23 45 45 H 1.08997 * 109.47326 * 59.99855 * 25 24 23 46 46 H 1.07997 * 120.00727 * 179.97438 * 26 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0835 1.3050 0.0000 4 6 2.0655 -1.2740 0.0006 5 8 1.4574 -2.3272 0.0006 6 7 3.4132 -1.2740 0.0000 7 6 4.1457 -2.5427 0.0000 8 6 5.6500 -2.2632 0.0000 9 6 6.4150 -3.5882 0.0007 10 7 7.8553 -3.3205 0.0001 11 6 8.7581 -4.3764 0.0010 12 6 8.2876 -5.6920 0.0031 13 6 9.1614 -6.7372 -0.0018 14 6 10.5490 -6.4954 0.0028 15 6 11.4568 -7.5737 0.0033 16 1 12.4509 -7.4430 -0.3981 17 6 11.0701 -8.8130 0.5235 18 7 10.1234 -8.8777 1.4258 19 14 11.9043 -10.3759 -0.0690 20 1 11.3177 -11.5463 0.6322 21 1 11.7001 -10.5217 -1.5325 22 1 13.3584 -10.3023 0.2231 23 6 11.0262 -5.1635 0.0011 24 8 12.3602 -4.9162 0.0008 25 6 12.7661 -3.5461 -0.0004 26 6 10.1259 -4.1171 0.0002 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 3.1551 1.1059 -0.0005 30 1 1.8202 1.8765 -0.8901 31 1 1.8202 1.8767 0.8899 32 1 3.8982 -0.4339 -0.0003 33 1 3.8821 -3.1145 -0.8896 34 1 3.8827 -3.1141 0.8903 35 1 5.9133 -1.6916 0.8900 36 1 5.9133 -1.6916 -0.8900 37 1 6.1517 -4.1601 -0.8891 38 1 6.1516 -4.1594 0.8908 39 1 8.1786 -2.4059 -0.0003 40 1 7.2245 -5.8817 0.0044 41 1 8.7901 -7.7513 -0.0050 42 1 9.7488 -8.0627 1.7951 43 1 13.8546 -3.4896 -0.0001 44 1 12.3765 -3.0527 -0.8908 45 1 12.3767 -3.0510 0.8891 46 1 10.4825 -3.0977 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167669956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:28 Heat of formation + Delta-G solvation = -42.030686 kcal Electronic energy + Delta-G solvation = -25174.025655 eV Core-core repulsion = 21449.857437 eV Total energy + Delta-G solvation = -3724.168218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.11409 -38.88204 -37.21319 -36.04904 -34.97938 -34.85705 -33.15089 -31.12334 -28.97130 -28.58631 -27.66576 -26.42949 -25.77131 -23.94883 -22.86679 -22.05596 -20.81902 -20.18490 -19.39598 -17.92082 -17.21237 -16.74753 -16.43747 -16.11584 -15.68142 -14.94820 -14.72937 -14.70117 -14.51659 -14.24709 -14.02734 -13.78332 -13.71050 -13.63433 -13.07156 -12.95792 -12.80631 -12.53826 -12.11482 -11.98212 -11.84268 -11.69127 -11.48453 -11.34333 -11.02665 -10.91517 -10.58127 -10.28764 -10.26789 -10.20162 -9.94549 -9.81432 -9.40692 -9.34881 -8.95986 -8.49398 -7.30939 -6.98413 -6.57267 -3.98126 1.01447 2.81476 2.83627 2.91833 2.96560 3.28632 3.39429 3.49104 4.06386 4.20132 4.35776 4.43698 4.46456 4.71126 4.76118 4.78015 4.92799 4.95341 5.08820 5.24633 5.39545 5.43116 5.48831 5.55856 5.67132 5.71093 5.77559 5.88014 5.89910 5.98447 5.99774 6.04786 6.06027 6.13479 6.26967 6.63486 6.86251 7.00684 7.17474 7.23550 7.54977 7.72030 7.90514 7.91566 8.14017 8.24419 8.40482 8.50098 8.58918 9.05285 9.11040 10.30550 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019776 B = 0.002087 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.524893 B =13414.294414 C =14697.963686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.184 4.184 3 C -0.117 4.117 4 C 0.548 3.452 5 O -0.541 6.541 6 N -0.726 5.726 7 C 0.121 3.879 8 C -0.140 4.140 9 C 0.142 3.858 10 N -0.760 5.760 11 C 0.111 3.889 12 C -0.169 4.169 13 C -0.162 4.162 14 C 0.055 3.945 15 C -0.515 4.515 16 H 0.074 0.926 17 C 0.036 3.964 18 N -0.815 5.815 19 Si 1.063 2.937 20 H -0.277 1.277 21 H -0.277 1.277 22 H -0.279 1.279 23 C 0.046 3.954 24 O -0.309 6.309 25 C 0.035 3.965 26 C -0.231 4.231 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.400 0.600 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.384 0.616 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.295 0.705 43 H 0.081 0.919 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.874 18.906 -2.164 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.187 4.187 3 C -0.174 4.174 4 C 0.336 3.664 5 O -0.419 6.419 6 N -0.378 5.378 7 C -0.003 4.003 8 C -0.178 4.178 9 C 0.016 3.984 10 N -0.396 5.396 11 C 0.014 3.986 12 C -0.192 4.192 13 C -0.183 4.183 14 C 0.051 3.949 15 C -0.545 4.545 16 H 0.092 0.908 17 C -0.183 4.183 18 N -0.440 5.440 19 Si 0.888 3.112 20 H -0.202 1.202 21 H -0.203 1.203 22 H -0.204 1.204 23 C 0.000 4.000 24 O -0.223 6.223 25 C -0.061 4.061 26 C -0.253 4.253 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.237 0.763 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.216 0.784 40 H 0.111 0.889 41 H 0.131 0.869 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.330 16.198 -1.976 20.453 hybrid contribution 0.282 2.927 -0.111 2.943 sum -12.048 19.126 -2.086 22.700 Atomic orbital electron populations 1.24600 0.94657 1.03396 0.91448 1.21665 0.95912 0.94272 1.06882 1.20831 0.99563 0.94027 1.02997 1.18471 0.82160 0.89477 0.76298 1.90814 1.68305 1.33033 1.49793 1.45999 1.06422 1.09975 1.75449 1.21296 0.90365 0.85523 1.03140 1.21942 0.93604 0.99280 1.03010 1.20853 0.81733 0.94855 1.00959 1.43776 1.02599 1.05807 1.87415 1.16912 0.87772 0.87212 1.06698 1.19930 0.97774 0.91167 1.10280 1.20513 0.92075 0.97662 1.08023 1.17004 0.92305 0.89303 0.96296 1.20155 1.01090 0.95677 1.37592 0.90750 1.26849 0.95277 1.03030 0.93126 1.70505 1.20407 1.35209 1.17875 0.83667 0.76127 0.74424 0.76974 1.20184 1.20277 1.20422 1.18896 0.80653 0.93608 1.06805 1.86001 1.21863 1.24435 1.89954 1.22726 0.99756 0.83785 0.99811 1.20096 0.92055 0.96590 1.16591 0.86710 0.86587 0.91975 0.90773 0.90761 0.76342 0.90901 0.90890 0.90912 0.90918 0.93002 0.92970 0.78407 0.88949 0.86903 0.89169 0.90012 0.94292 0.94234 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 13.96 28.91 0.40 -0.29 16 2 C -0.18 -1.42 6.00 -102.84 -0.62 -2.03 16 3 C -0.12 -0.53 10.02 36.01 0.36 -0.17 16 4 C 0.55 6.01 7.75 -12.66 -0.10 5.91 16 5 O -0.54 -8.18 16.22 5.26 0.09 -8.09 16 6 N -0.73 -6.43 5.52 -61.49 -0.34 -6.77 16 7 C 0.12 1.21 5.67 -4.04 -0.02 1.19 16 8 C -0.14 -1.32 5.44 -26.73 -0.15 -1.46 16 9 C 0.14 1.91 4.89 -4.04 -0.02 1.89 16 10 N -0.76 -12.30 5.70 -58.54 -0.33 -12.63 16 11 C 0.11 2.35 6.66 -83.73 -0.56 1.80 16 12 C -0.17 -3.87 9.22 -39.75 -0.37 -4.24 16 13 C -0.16 -4.20 7.88 -39.32 -0.31 -4.51 16 14 C 0.05 1.49 5.31 -106.64 -0.57 0.93 16 15 C -0.52 -14.42 8.63 -37.95 -0.33 -14.75 16 16 H 0.07 2.10 7.71 -52.49 -0.40 1.69 16 17 C 0.04 0.96 4.93 -17.33 -0.09 0.87 16 18 N -0.81 -22.50 12.32 55.54 0.68 -21.81 16 19 Si 1.06 22.83 30.00 -169.99 -5.10 17.73 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 C 0.05 1.14 6.71 -38.42 -0.26 0.88 16 24 O -0.31 -7.27 9.79 -18.72 -0.18 -7.45 16 25 C 0.04 0.61 9.81 101.05 0.99 1.60 16 26 C -0.23 -5.06 8.86 -39.29 -0.35 -5.41 16 27 H 0.11 0.44 8.06 -52.49 -0.42 0.02 16 28 H 0.12 0.93 7.49 -52.48 -0.39 0.54 16 29 H 0.06 0.23 5.84 -51.93 -0.30 -0.07 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.40 2.43 6.20 -40.82 -0.25 2.18 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.74 7.93 -51.93 -0.41 0.33 16 38 H 0.05 0.75 7.92 -51.93 -0.41 0.34 16 39 H 0.38 5.37 8.47 -40.82 -0.35 5.03 16 40 H 0.09 1.92 6.67 -52.49 -0.35 1.57 16 41 H 0.11 3.02 6.48 -52.49 -0.34 2.68 16 42 H 0.30 8.35 6.69 -40.82 -0.27 8.07 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.04 0.61 7.66 -51.93 -0.40 0.22 16 45 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 46 H 0.10 1.85 6.29 -52.49 -0.33 1.52 16 LS Contribution 380.67 15.07 5.74 5.74 Total: -1.00 -33.08 380.67 -8.21 -41.29 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -6.79 Total: 9.80 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -1.97 Total: -17.79 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.01 Total: -41.22 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.10 Total: -15.55 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.10 Total: 17.73 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.08 -8.21 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167669956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.741 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds