Wall clock time and date at job start Tue Mar 31 2020 13:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32995 * 1 3 3 C 1.50699 * 120.00429 * 2 1 4 4 C 1.47107 * 120.00174 * 179.97438 * 2 1 3 5 5 O 1.21617 * 119.99494 * 0.02562 * 4 2 1 6 6 N 1.34772 * 120.00268 * 179.97438 * 4 2 1 7 7 C 1.46497 * 120.00020 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.47305 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.47355 * 179.97438 * 8 7 6 10 10 N 1.46495 * 109.46865 * 179.97438 * 9 8 7 11 11 C 1.38926 * 119.99921 * 179.97438 * 10 9 8 12 12 C 1.39724 * 119.79372 * 359.97438 * 11 10 9 13 13 C 1.36232 * 120.42652 * 179.71119 * 12 11 10 14 14 C 1.40853 * 120.00903 * 0.56131 * 13 12 11 15 15 C 1.40962 * 120.20512 * 179.73868 * 14 13 12 16 16 H 1.08001 * 120.00581 * 154.36423 * 15 14 13 17 17 C 1.39851 * 119.99501 * 334.36958 * 15 14 13 18 18 N 1.30943 * 120.00136 * 334.60479 * 17 15 14 19 19 Si 1.86805 * 119.99768 * 154.60726 * 17 15 14 20 20 H 1.48501 * 109.46807 * 179.97438 * 19 17 15 21 21 H 1.48491 * 109.47148 * 299.99962 * 19 17 15 22 22 H 1.48500 * 109.47162 * 60.00097 * 19 17 15 23 23 C 1.41478 * 119.59796 * 359.46253 * 14 13 12 24 24 O 1.35673 * 120.21157 * 180.23304 * 23 14 13 25 25 C 1.42897 * 116.99900 * 180.02562 * 24 23 14 26 26 C 1.38039 * 119.57688 * 0.25090 * 23 14 13 27 27 H 1.07999 * 119.99888 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.99645 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47502 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46404 * 299.99766 * 3 2 1 31 31 H 1.08997 * 109.47453 * 59.99221 * 3 2 1 32 32 H 0.97004 * 119.99834 * 0.02562 * 6 4 2 33 33 H 1.08995 * 109.47501 * 59.99857 * 7 6 4 34 34 H 1.09005 * 109.47309 * 299.99941 * 7 6 4 35 35 H 1.09002 * 109.47007 * 59.99667 * 8 7 6 36 36 H 1.09005 * 109.46617 * 300.00032 * 8 7 6 37 37 H 1.08997 * 109.46675 * 60.00176 * 9 8 7 38 38 H 1.08994 * 109.47005 * 300.00245 * 9 8 7 39 39 H 0.97001 * 120.00357 * 0.02562 * 10 9 8 40 40 H 1.07993 * 119.78869 * 359.97438 * 12 11 10 41 41 H 1.07999 * 119.99367 * 180.29846 * 13 12 11 42 42 H 0.97005 * 120.00308 * 354.19396 * 18 17 15 43 43 H 1.09003 * 109.46883 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.46666 * 299.99708 * 25 24 23 45 45 H 1.08997 * 109.47326 * 59.99855 * 25 24 23 46 46 H 1.07997 * 120.00727 * 179.97438 * 26 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0835 1.3050 0.0000 4 6 2.0655 -1.2740 0.0006 5 8 1.4574 -2.3272 0.0006 6 7 3.4132 -1.2740 0.0000 7 6 4.1457 -2.5427 0.0000 8 6 5.6500 -2.2632 0.0000 9 6 6.4150 -3.5882 0.0007 10 7 7.8553 -3.3205 0.0001 11 6 8.7581 -4.3764 0.0010 12 6 8.2876 -5.6920 0.0031 13 6 9.1614 -6.7372 -0.0018 14 6 10.5490 -6.4954 0.0028 15 6 11.4568 -7.5737 0.0033 16 1 12.4509 -7.4430 -0.3981 17 6 11.0701 -8.8130 0.5235 18 7 10.1234 -8.8777 1.4258 19 14 11.9043 -10.3759 -0.0690 20 1 11.3177 -11.5463 0.6322 21 1 11.7001 -10.5217 -1.5325 22 1 13.3584 -10.3023 0.2231 23 6 11.0262 -5.1635 0.0011 24 8 12.3602 -4.9162 0.0008 25 6 12.7661 -3.5461 -0.0004 26 6 10.1259 -4.1171 0.0002 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 3.1551 1.1059 -0.0005 30 1 1.8202 1.8765 -0.8901 31 1 1.8202 1.8767 0.8899 32 1 3.8982 -0.4339 -0.0003 33 1 3.8821 -3.1145 -0.8896 34 1 3.8827 -3.1141 0.8903 35 1 5.9133 -1.6916 0.8900 36 1 5.9133 -1.6916 -0.8900 37 1 6.1517 -4.1601 -0.8891 38 1 6.1516 -4.1594 0.8908 39 1 8.1786 -2.4059 -0.0003 40 1 7.2245 -5.8817 0.0044 41 1 8.7901 -7.7513 -0.0050 42 1 9.7488 -8.0627 1.7951 43 1 13.8546 -3.4896 -0.0001 44 1 12.3765 -3.0527 -0.8908 45 1 12.3767 -3.0510 0.8891 46 1 10.4825 -3.0977 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167669956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:27 Heat of formation + Delta-G solvation = -64.695626 kcal Electronic energy + Delta-G solvation = -25175.008481 eV Core-core repulsion = 21449.857437 eV Total energy + Delta-G solvation = -3725.151044 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.94813 -40.65352 -38.71767 -37.41063 -36.32855 -35.54672 -34.68266 -32.43088 -30.79177 -30.16297 -28.09583 -27.97021 -27.00106 -25.62207 -23.88492 -23.08619 -22.47859 -21.81807 -20.18472 -19.84144 -18.45666 -17.79811 -17.55228 -17.04449 -16.99280 -16.43987 -16.32360 -15.99875 -15.84052 -15.62745 -15.45898 -14.95826 -14.66725 -14.42575 -14.35885 -14.30021 -13.86400 -13.54509 -13.41317 -13.24220 -12.98270 -12.89011 -12.66742 -12.60819 -12.46375 -12.27697 -12.21015 -11.93933 -11.75581 -11.72951 -11.29170 -11.05649 -10.81106 -10.43033 -10.31151 -10.09237 -9.18826 -8.93206 -8.34900 -5.99280 0.39502 0.92171 1.05648 1.52673 1.67713 1.82266 2.06478 2.22080 2.42822 2.72434 2.79659 2.91270 3.60494 3.72049 3.94872 3.95832 4.00674 4.04364 4.24027 4.41581 4.43270 4.45427 4.48115 4.52259 4.56641 4.70241 4.70967 4.81481 4.84267 4.84440 5.01400 5.09300 5.09310 5.10442 5.21710 5.30458 5.37166 5.40064 5.55238 5.61268 5.80709 5.94437 6.20089 6.26030 6.47585 6.61964 6.72036 7.08384 7.10416 7.14754 7.27616 8.25261 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019776 B = 0.002087 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.524893 B =13414.294414 C =14697.963686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.197 4.197 3 C -0.112 4.112 4 C 0.538 3.462 5 O -0.594 6.594 6 N -0.712 5.712 7 C 0.123 3.877 8 C -0.119 4.119 9 C 0.136 3.864 10 N -0.745 5.745 11 C 0.144 3.856 12 C -0.190 4.190 13 C -0.166 4.166 14 C 0.005 3.995 15 C -0.554 4.554 16 H 0.057 0.943 17 C -0.003 4.003 18 N -0.841 5.841 19 Si 1.114 2.886 20 H -0.272 1.272 21 H -0.267 1.267 22 H -0.264 1.264 23 C 0.045 3.955 24 O -0.339 6.339 25 C 0.026 3.974 26 C -0.239 4.239 27 H 0.149 0.851 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.417 0.583 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.043 0.957 39 H 0.401 0.599 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.277 0.723 43 H 0.110 0.890 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.139 22.746 -2.670 25.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.200 4.200 3 C -0.169 4.169 4 C 0.328 3.672 5 O -0.477 6.477 6 N -0.365 5.365 7 C -0.001 4.001 8 C -0.157 4.157 9 C 0.010 3.990 10 N -0.380 5.380 11 C 0.043 3.957 12 C -0.213 4.213 13 C -0.187 4.187 14 C 0.002 3.998 15 C -0.584 4.584 16 H 0.075 0.925 17 C -0.215 4.215 18 N -0.467 5.467 19 Si 0.932 3.068 20 H -0.197 1.197 21 H -0.191 1.191 22 H -0.188 1.188 23 C -0.001 4.001 24 O -0.254 6.254 25 C -0.069 4.069 26 C -0.261 4.261 27 H 0.167 0.833 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.256 0.744 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.236 0.764 40 H 0.127 0.873 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.129 0.871 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.585 20.148 -2.486 23.885 hybrid contribution 0.246 2.059 0.022 2.074 sum -12.340 22.208 -2.464 25.525 Atomic orbital electron populations 1.24823 0.94605 1.04051 0.89977 1.21799 0.96224 0.94045 1.07937 1.20871 0.99569 0.92244 1.04237 1.19144 0.82678 0.90114 0.75293 1.90787 1.69359 1.35127 1.52419 1.45865 1.05977 1.10293 1.74341 1.21148 0.91032 0.85995 1.01969 1.21733 0.92016 0.97103 1.04850 1.21001 0.80396 0.97279 1.00313 1.43818 1.03142 1.05464 1.85553 1.17079 0.88552 0.87801 1.02222 1.20086 0.98285 0.91537 1.11380 1.20441 0.92359 0.97584 1.08307 1.17340 0.92932 0.90778 0.98749 1.20188 1.00860 0.97359 1.40035 0.92491 1.28192 0.95228 1.05875 0.92230 1.70626 1.22551 1.33895 1.19634 0.83046 0.75892 0.70844 0.76989 1.19711 1.19149 1.18844 1.19104 0.82005 0.93582 1.05386 1.85954 1.21126 1.28525 1.89776 1.23110 1.01752 0.80892 1.01131 1.20391 0.91849 0.97609 1.16295 0.83318 0.88682 0.91144 0.89466 0.89493 0.74389 0.92163 0.92300 0.89105 0.88951 0.93576 0.93826 0.76370 0.87287 0.89099 0.91104 0.87148 0.92618 0.92907 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 13.96 66.65 0.93 -0.21 16 2 C -0.20 -2.65 6.00 -18.70 -0.11 -2.77 16 3 C -0.11 -0.63 10.02 71.24 0.71 0.09 16 4 C 0.54 11.36 7.75 86.57 0.67 12.03 16 5 O -0.59 -18.41 16.22 -4.08 -0.07 -18.48 16 6 N -0.71 -11.18 5.52 -466.71 -2.58 -13.76 16 7 C 0.12 2.28 5.67 86.38 0.49 2.77 16 8 C -0.12 -1.82 5.44 30.60 0.17 -1.65 16 9 C 0.14 3.31 4.89 86.38 0.42 3.73 16 10 N -0.74 -21.50 5.70 -339.12 -1.93 -23.43 16 11 C 0.14 5.80 6.66 38.61 0.26 6.06 16 12 C -0.19 -8.74 9.22 22.16 0.20 -8.54 16 13 C -0.17 -8.98 7.88 22.44 0.18 -8.80 16 14 C 0.01 0.31 5.31 -21.17 -0.11 0.20 16 15 C -0.55 -32.68 8.63 23.33 0.20 -32.48 16 16 H 0.06 3.41 7.71 -2.91 -0.02 3.39 16 17 C 0.00 -0.18 4.93 85.22 0.42 0.24 16 18 N -0.84 -49.03 12.32 21.82 0.27 -48.76 16 19 Si 1.11 47.72 30.00 68.60 2.06 49.78 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 23 C 0.04 2.25 6.71 23.02 0.15 2.41 16 24 O -0.34 -15.92 9.79 -89.90 -0.88 -16.80 16 25 C 0.03 0.82 9.81 113.37 1.11 1.93 16 26 C -0.24 -9.98 8.86 22.46 0.20 -9.78 16 27 H 0.15 0.69 8.06 -2.91 -0.02 0.67 16 28 H 0.09 1.54 7.49 -2.91 -0.02 1.51 16 29 H 0.07 0.25 5.84 -2.39 -0.01 0.24 16 30 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.42 3.66 6.20 -92.71 -0.57 3.09 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.05 1.22 7.93 -2.39 -0.02 1.20 16 38 H 0.04 1.18 7.92 -2.39 -0.02 1.16 16 39 H 0.40 9.24 8.47 -92.71 -0.79 8.45 16 40 H 0.11 4.54 6.67 -2.91 -0.02 4.52 16 41 H 0.09 5.20 6.48 -2.91 -0.02 5.18 16 42 H 0.28 16.76 6.69 -92.70 -0.62 16.14 16 43 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 44 H 0.06 1.57 7.66 -2.39 -0.02 1.55 16 45 H 0.05 1.52 7.66 -2.39 -0.02 1.50 16 46 H 0.13 4.52 6.29 -2.91 -0.02 4.50 16 Total: -1.00 -78.13 380.67 2.56 -75.57 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: -0.21 Total: 30.66 kcal Atomic # 6 Polarization: -40.68 SS G_CDS: 5.89 Total: -34.79 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -4.24 Total: -85.95 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -0.95 Total: -35.28 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.06 Total: 49.78 kcal Total: -78.13 2.56 -75.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167669956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.873 kcal (2) G-P(sol) polarization free energy of solvation -78.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds