Wall clock time and date at job start Tue Mar 31 2020 12:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47060 * 2 1 4 4 C 1.52999 * 109.47120 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47121 * 180.02562 * 4 3 2 6 6 C 1.37090 * 120.00178 * 269.99914 * 5 4 3 7 7 H 1.08002 * 119.99907 * 338.56198 * 6 5 4 8 8 C 1.38949 * 120.00393 * 158.56256 * 6 5 4 9 9 N 1.31417 * 119.99619 * 354.61837 * 8 6 5 10 10 Si 1.86799 * 120.00588 * 174.62087 * 8 6 5 11 11 H 1.48500 * 109.47311 * 64.99617 * 10 8 6 12 12 H 1.48497 * 109.47364 * 185.00344 * 10 8 6 13 13 H 1.48509 * 109.46656 * 305.00083 * 10 8 6 14 14 C 1.34782 * 120.00114 * 89.99823 * 5 4 3 15 15 O 1.21291 * 120.00115 * 127.75023 * 14 5 4 16 16 C 1.50698 * 119.99940 * 307.76254 * 14 5 4 17 17 C 1.50694 * 115.55590 * 85.55058 * 16 14 5 18 18 N 1.31843 * 119.66105 * 221.72717 * 17 16 14 19 19 C 1.31846 * 121.77865 * 180.29537 * 18 17 16 20 20 C 1.38249 * 120.89145 * 359.69446 * 19 18 17 21 21 C 1.38534 * 119.21815 * 0.02562 * 20 19 18 22 22 C 1.38701 * 119.65671 * 41.43422 * 17 16 14 23 23 O 1.35918 * 120.47641 * 0.02562 * 22 17 16 24 24 C 1.42892 * 117.00422 * 184.98193 * 23 22 17 25 25 C 1.53006 * 117.51432 * 231.25674 * 16 14 5 26 26 C 1.52992 * 60.00180 * 107.47588 * 25 16 14 27 27 H 1.09004 * 109.46838 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46919 * 299.99333 * 1 2 3 29 29 H 1.08991 * 109.47574 * 59.99446 * 1 2 3 30 30 H 1.09008 * 109.46919 * 240.00667 * 2 1 3 31 31 H 1.08991 * 109.47574 * 120.00554 * 2 1 3 32 32 H 1.09000 * 109.46960 * 60.00297 * 3 2 1 33 33 H 1.09000 * 109.47331 * 300.00369 * 3 2 1 34 34 H 1.09000 * 109.47279 * 60.00104 * 4 3 2 35 35 H 1.09000 * 109.47002 * 300.00182 * 4 3 2 36 36 H 0.97001 * 119.99761 * 185.00873 * 9 8 6 37 37 H 1.08003 * 119.55575 * 179.68329 * 19 18 17 38 38 H 1.08002 * 120.39447 * 179.97438 * 20 19 18 39 39 H 1.08006 * 120.81539 * 180.02562 * 21 20 19 40 40 H 1.08997 * 109.47499 * 175.12843 * 24 23 22 41 41 H 1.09000 * 109.47507 * 55.12103 * 24 23 22 42 42 H 1.09008 * 109.47053 * 295.12900 * 24 23 22 43 43 H 1.09003 * 117.49917 * 214.97117 * 25 16 14 44 44 H 1.08996 * 117.49852 * 359.97438 * 25 16 14 45 45 H 1.08998 * 117.50307 * 252.50851 * 26 25 16 46 46 H 1.09006 * 117.50089 * 107.48739 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2863 3.4708 -1.1870 7 1 4.4469 2.9011 -2.0903 8 6 4.3108 4.8594 -1.2278 9 7 4.0113 5.5537 -0.1530 10 14 4.7692 5.7395 -2.8104 11 1 3.7422 5.4620 -3.8465 12 1 4.8389 7.2018 -2.5614 13 1 6.0913 5.2541 -3.2815 14 6 4.2834 3.4585 1.1675 15 8 5.3532 3.9925 1.3711 16 6 3.2059 3.5044 2.2201 17 6 3.1507 2.3168 3.1461 18 7 1.9831 1.8040 3.4806 19 6 1.8859 0.7693 4.2920 20 6 3.0157 0.1745 4.8220 21 6 4.2633 0.6782 4.4920 22 6 4.3291 1.7708 3.6329 23 8 5.5308 2.2994 3.2810 24 6 6.6993 1.6140 3.7357 25 6 2.8452 4.8723 2.8031 26 6 1.8803 4.1703 1.8454 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9330 0.9289 -0.8909 35 1 3.9337 0.9286 0.8891 36 1 3.9573 6.5211 -0.1999 37 1 0.9105 0.3814 4.5461 38 1 2.9268 -0.6725 5.4862 39 1 5.1629 0.2332 4.8910 40 1 7.5858 2.0887 3.3151 41 1 6.6578 0.5730 3.4152 42 1 6.7457 1.6575 4.8239 43 1 2.5680 4.9132 3.8565 44 1 3.3875 5.7391 2.4256 45 1 1.7877 4.5754 0.8377 46 1 0.9683 3.7493 2.2687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178173662.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:32 Heat of formation + Delta-G solvation = 9.582984 kcal Electronic energy + Delta-G solvation = -29292.799711 eV Core-core repulsion = 25570.869629 eV Total energy + Delta-G solvation = -3721.930082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.56258 -38.41114 -37.74184 -35.56875 -34.98781 -33.28570 -31.68588 -31.45228 -30.24197 -27.92995 -27.14851 -25.26227 -24.05814 -22.96708 -22.64034 -21.45530 -21.10600 -20.20201 -18.72954 -17.78675 -17.00913 -16.42356 -15.70808 -15.54966 -15.08624 -14.82385 -14.65759 -14.06048 -13.92642 -13.85402 -13.54281 -13.46980 -13.33235 -12.95323 -12.39892 -12.28817 -12.04480 -11.87354 -11.40976 -11.19842 -11.15453 -10.97888 -10.91727 -10.74531 -10.61154 -10.56143 -10.40592 -10.31365 -10.12892 -9.84717 -9.80547 -9.54686 -9.23669 -9.01376 -8.89638 -8.03649 -7.76626 -7.05384 -6.00779 -3.48521 1.36606 1.53132 3.34957 3.41070 3.41875 3.57515 3.99587 4.16956 4.37466 4.67429 4.73599 4.89780 5.04233 5.16393 5.21891 5.33006 5.34118 5.44343 5.47250 5.49441 5.52883 5.67297 5.73280 5.85393 5.97167 5.99721 6.07264 6.11066 6.21394 6.22476 6.34819 6.37797 6.41032 6.46248 6.54755 6.60388 6.64549 6.67278 6.91482 7.03643 7.12753 7.24529 7.33994 7.62364 7.65915 8.28723 8.33785 9.21068 9.57705 9.83220 10.39049 11.12252 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.006489 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.079827 B = 4314.270595 C = 5290.009081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C -0.145 4.145 4 C 0.138 3.862 5 N -0.528 5.528 6 C -0.288 4.288 7 H 0.078 0.922 8 C 0.022 3.978 9 N -0.872 5.872 10 Si 0.923 3.077 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.280 1.280 14 C 0.609 3.391 15 O -0.502 6.502 16 C -0.098 4.098 17 C 0.160 3.840 18 N -0.440 5.440 19 C 0.054 3.946 20 C -0.148 4.148 21 C -0.174 4.174 22 C 0.086 3.914 23 O -0.270 6.270 24 C 0.027 3.973 25 C -0.133 4.133 26 C -0.131 4.131 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.034 0.966 36 H 0.265 0.735 37 H 0.152 0.848 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.101 0.899 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.524 -10.643 8.560 14.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.184 4.184 4 C 0.012 3.988 5 N -0.254 5.254 6 C -0.415 4.415 7 H 0.096 0.904 8 C -0.181 4.181 9 N -0.514 5.514 10 Si 0.752 3.248 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.206 1.206 14 C 0.396 3.604 15 O -0.373 6.373 16 C -0.103 4.103 17 C 0.020 3.980 18 N -0.149 5.149 19 C -0.102 4.102 20 C -0.167 4.167 21 C -0.200 4.200 22 C 0.037 3.963 23 O -0.181 6.181 24 C -0.068 4.068 25 C -0.171 4.171 26 C -0.168 4.168 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.169 0.831 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.119 0.881 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.130 0.870 45 H 0.128 0.872 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.527 -9.602 8.291 13.167 hybrid contribution 0.905 -0.349 -0.184 0.988 sum -2.621 -9.951 8.107 13.100 Atomic orbital electron populations 1.21724 0.96449 1.00383 1.01820 1.21453 0.95417 0.98224 1.00577 1.22274 0.97467 0.95073 1.03614 1.21091 0.92842 0.85843 0.98980 1.42765 1.66962 1.11158 1.04537 1.19237 1.46971 0.89198 0.86107 0.90400 1.25010 0.98641 0.96693 0.97732 1.69448 1.47731 1.06809 1.27364 0.86054 0.78637 0.78377 0.81735 1.20815 1.21324 1.20563 1.17612 0.85015 0.78005 0.79806 1.90384 1.25353 1.44411 1.77201 1.20183 1.00869 0.90466 0.98781 1.19858 0.85556 0.96333 0.96232 1.67473 1.25878 1.10129 1.11386 1.22521 0.98477 0.93564 0.95680 1.21834 0.92687 1.00992 1.01237 1.21624 0.99324 0.98166 1.00908 1.20089 0.87872 0.93541 0.94809 1.86573 1.11019 1.49538 1.70929 1.23045 0.87509 0.97259 0.99015 1.22842 1.02699 0.94536 0.97011 1.22866 0.91336 1.01304 1.01274 0.93808 0.92691 0.93019 0.92954 0.93220 0.90138 0.91856 0.92745 0.94702 0.92389 0.83050 0.85225 0.84815 0.88055 0.93242 0.93344 0.90762 0.87025 0.87160 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.82 5.93 -26.73 -0.16 -1.98 16 3 C -0.15 -2.76 5.41 -26.73 -0.14 -2.90 16 4 C 0.14 2.95 5.14 -4.04 -0.02 2.93 16 5 N -0.53 -13.51 2.60 -114.81 -0.30 -13.81 16 6 C -0.29 -7.87 9.59 -14.94 -0.14 -8.01 16 7 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 8 C 0.02 0.60 5.17 -17.47 -0.09 0.51 16 9 N -0.87 -24.55 9.53 55.50 0.53 -24.02 16 10 Si 0.92 21.83 29.56 -169.99 -5.02 16.81 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.61 15.84 2.41 -10.98 -0.03 15.81 16 15 O -0.50 -14.88 14.89 -15.39 -0.23 -15.10 16 16 C -0.10 -2.19 1.08 -156.81 -0.17 -2.35 16 17 C 0.16 3.15 5.03 -82.42 -0.41 2.74 16 18 N -0.44 -7.64 8.84 -9.36 -0.08 -7.72 16 19 C 0.05 0.75 11.18 -17.54 -0.20 0.55 16 20 C -0.15 -1.84 10.11 -39.47 -0.40 -2.24 16 21 C -0.17 -2.48 9.13 -39.14 -0.36 -2.83 16 22 C 0.09 1.58 6.52 -39.07 -0.25 1.33 16 23 O -0.27 -5.40 7.41 -40.42 -0.30 -5.70 16 24 C 0.03 0.39 9.84 101.05 0.99 1.38 16 25 C -0.13 -2.88 9.91 -26.73 -0.26 -3.14 16 26 C -0.13 -2.78 8.00 -26.73 -0.21 -2.99 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.60 4.48 -51.93 -0.23 1.37 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.05 1.12 8.03 -51.93 -0.42 0.70 16 35 H 0.03 0.74 7.48 -51.93 -0.39 0.35 16 36 H 0.27 7.28 8.32 -40.82 -0.34 6.94 16 37 H 0.15 1.61 8.06 -52.48 -0.42 1.18 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.13 1.52 6.48 -52.48 -0.34 1.18 16 40 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 42 H 0.05 0.56 7.76 -51.92 -0.40 0.15 16 43 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 44 H 0.11 2.68 7.76 -51.93 -0.40 2.28 16 45 H 0.11 2.64 7.61 -51.93 -0.39 2.24 16 46 H 0.09 1.73 7.56 -51.93 -0.39 1.33 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -32.57 370.70 -8.45 -41.02 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.14 Total: 5.75 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -1.49 Total: -2.81 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.15 Total: -45.56 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.53 Total: -20.80 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.57 -8.45 -41.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178173662.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.608 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds