Wall clock time and date at job start Tue Mar 31 2020 12:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47060 * 2 1 4 4 C 1.52999 * 109.47120 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47121 * 180.02562 * 4 3 2 6 6 C 1.37090 * 120.00178 * 269.99914 * 5 4 3 7 7 H 1.08002 * 119.99907 * 338.56198 * 6 5 4 8 8 C 1.38949 * 120.00393 * 158.56256 * 6 5 4 9 9 N 1.31417 * 119.99619 * 354.61837 * 8 6 5 10 10 Si 1.86799 * 120.00588 * 174.62087 * 8 6 5 11 11 H 1.48500 * 109.47311 * 64.99617 * 10 8 6 12 12 H 1.48497 * 109.47364 * 185.00344 * 10 8 6 13 13 H 1.48509 * 109.46656 * 305.00083 * 10 8 6 14 14 C 1.34782 * 120.00114 * 89.99823 * 5 4 3 15 15 O 1.21291 * 120.00115 * 127.75023 * 14 5 4 16 16 C 1.50698 * 119.99940 * 307.76254 * 14 5 4 17 17 C 1.50694 * 115.55590 * 85.55058 * 16 14 5 18 18 N 1.31843 * 119.66105 * 221.72717 * 17 16 14 19 19 C 1.31846 * 121.77865 * 180.29537 * 18 17 16 20 20 C 1.38249 * 120.89145 * 359.69446 * 19 18 17 21 21 C 1.38534 * 119.21815 * 0.02562 * 20 19 18 22 22 C 1.38701 * 119.65671 * 41.43422 * 17 16 14 23 23 O 1.35918 * 120.47641 * 0.02562 * 22 17 16 24 24 C 1.42892 * 117.00422 * 184.98193 * 23 22 17 25 25 C 1.53006 * 117.51432 * 231.25674 * 16 14 5 26 26 C 1.52992 * 60.00180 * 107.47588 * 25 16 14 27 27 H 1.09004 * 109.46838 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46919 * 299.99333 * 1 2 3 29 29 H 1.08991 * 109.47574 * 59.99446 * 1 2 3 30 30 H 1.09008 * 109.46919 * 240.00667 * 2 1 3 31 31 H 1.08991 * 109.47574 * 120.00554 * 2 1 3 32 32 H 1.09000 * 109.46960 * 60.00297 * 3 2 1 33 33 H 1.09000 * 109.47331 * 300.00369 * 3 2 1 34 34 H 1.09000 * 109.47279 * 60.00104 * 4 3 2 35 35 H 1.09000 * 109.47002 * 300.00182 * 4 3 2 36 36 H 0.97001 * 119.99761 * 185.00873 * 9 8 6 37 37 H 1.08003 * 119.55575 * 179.68329 * 19 18 17 38 38 H 1.08002 * 120.39447 * 179.97438 * 20 19 18 39 39 H 1.08006 * 120.81539 * 180.02562 * 21 20 19 40 40 H 1.08997 * 109.47499 * 175.12843 * 24 23 22 41 41 H 1.09000 * 109.47507 * 55.12103 * 24 23 22 42 42 H 1.09008 * 109.47053 * 295.12900 * 24 23 22 43 43 H 1.09003 * 117.49917 * 214.97117 * 25 16 14 44 44 H 1.08996 * 117.49852 * 359.97438 * 25 16 14 45 45 H 1.08998 * 117.50307 * 252.50851 * 26 25 16 46 46 H 1.09006 * 117.50089 * 107.48739 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2863 3.4708 -1.1870 7 1 4.4469 2.9011 -2.0903 8 6 4.3108 4.8594 -1.2278 9 7 4.0113 5.5537 -0.1530 10 14 4.7692 5.7395 -2.8104 11 1 3.7422 5.4620 -3.8465 12 1 4.8389 7.2018 -2.5614 13 1 6.0913 5.2541 -3.2815 14 6 4.2834 3.4585 1.1675 15 8 5.3532 3.9925 1.3711 16 6 3.2059 3.5044 2.2201 17 6 3.1507 2.3168 3.1461 18 7 1.9831 1.8040 3.4806 19 6 1.8859 0.7693 4.2920 20 6 3.0157 0.1745 4.8220 21 6 4.2633 0.6782 4.4920 22 6 4.3291 1.7708 3.6329 23 8 5.5308 2.2994 3.2810 24 6 6.6993 1.6140 3.7357 25 6 2.8452 4.8723 2.8031 26 6 1.8803 4.1703 1.8454 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9330 0.9289 -0.8909 35 1 3.9337 0.9286 0.8891 36 1 3.9573 6.5211 -0.1999 37 1 0.9105 0.3814 4.5461 38 1 2.9268 -0.6725 5.4862 39 1 5.1629 0.2332 4.8910 40 1 7.5858 2.0887 3.3151 41 1 6.6578 0.5730 3.4152 42 1 6.7457 1.6575 4.8239 43 1 2.5680 4.9132 3.8565 44 1 3.3875 5.7391 2.4256 45 1 1.7877 4.5754 0.8377 46 1 0.9683 3.7493 2.2687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178173662.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:30 Heat of formation + Delta-G solvation = -8.888438 kcal Electronic energy + Delta-G solvation = -29293.600692 eV Core-core repulsion = 25570.869629 eV Total energy + Delta-G solvation = -3722.731063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.86707 -40.17876 -39.01164 -37.23262 -36.71959 -35.07776 -33.37478 -32.84407 -31.46560 -29.50583 -28.25976 -27.17576 -25.61714 -24.47164 -23.86078 -23.05857 -22.68644 -21.67141 -20.52197 -19.15917 -18.51622 -17.80141 -17.31823 -17.06520 -16.72478 -16.30695 -16.23556 -15.70644 -15.57777 -15.14806 -15.06200 -14.76995 -14.53373 -14.36677 -13.81312 -13.77568 -13.43966 -13.36179 -13.07460 -12.94221 -12.81642 -12.56629 -12.36319 -12.29454 -12.19576 -12.18394 -12.10768 -11.90226 -11.71153 -11.41981 -11.38400 -11.05877 -10.94421 -10.48457 -10.31222 -9.97261 -9.20520 -8.99000 -8.10485 -5.61324 0.20267 0.39829 1.41482 1.47228 1.52665 2.23136 2.42079 2.53050 2.75371 3.03033 3.30268 3.32902 3.56594 3.80231 3.88508 4.11608 4.13512 4.14784 4.30178 4.32064 4.35046 4.39180 4.43075 4.44652 4.46915 4.53148 4.66907 4.72715 4.73500 4.84304 4.97805 5.05863 5.06355 5.13364 5.15702 5.19037 5.25667 5.36068 5.44948 5.50484 5.53494 5.55214 5.63647 5.71426 6.20576 6.45542 7.11034 7.14566 7.57393 7.85039 8.38547 9.01039 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.006489 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.079827 B = 4314.270595 C = 5290.009081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C -0.133 4.133 4 C 0.139 3.861 5 N -0.545 5.545 6 C -0.308 4.308 7 H 0.081 0.919 8 C -0.029 4.029 9 N -0.892 5.892 10 Si 0.986 3.014 11 H -0.266 1.266 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.613 3.387 15 O -0.554 6.554 16 C -0.092 4.092 17 C 0.125 3.875 18 N -0.454 5.454 19 C 0.054 3.946 20 C -0.125 4.125 21 C -0.166 4.166 22 C 0.060 3.940 23 O -0.318 6.318 24 C 0.021 3.979 25 C -0.138 4.138 26 C -0.114 4.114 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.035 0.965 36 H 0.259 0.741 37 H 0.190 0.810 38 H 0.179 0.821 39 H 0.164 0.836 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.004 -13.907 10.094 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C -0.172 4.172 4 C 0.015 3.985 5 N -0.272 5.272 6 C -0.435 4.435 7 H 0.099 0.901 8 C -0.229 4.229 9 N -0.534 5.534 10 Si 0.812 3.188 11 H -0.191 1.191 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.402 3.598 15 O -0.430 6.430 16 C -0.097 4.097 17 C -0.013 4.013 18 N -0.163 5.163 19 C -0.104 4.104 20 C -0.144 4.144 21 C -0.192 4.192 22 C 0.011 3.989 23 O -0.230 6.230 24 C -0.074 4.074 25 C -0.176 4.176 26 C -0.151 4.151 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.207 0.793 38 H 0.196 0.804 39 H 0.182 0.818 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.115 0.885 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.030 -12.889 9.808 16.960 hybrid contribution 1.397 0.524 -0.563 1.595 sum -3.633 -12.366 9.245 15.861 Atomic orbital electron populations 1.21677 0.94686 1.01953 1.01574 1.21383 0.96869 0.95308 1.01304 1.22095 0.95364 0.97573 1.02151 1.21180 0.94615 0.83662 0.99033 1.42988 1.67489 1.12560 1.04134 1.19562 1.47277 0.89776 0.86935 0.90143 1.25859 0.98764 0.97453 1.00814 1.69604 1.48509 1.06366 1.28909 0.85082 0.78401 0.76755 0.78540 1.19110 1.21663 1.20673 1.18156 0.84986 0.76366 0.80270 1.90334 1.27653 1.46522 1.78503 1.19846 0.99259 0.92047 0.98509 1.19403 0.87174 0.96702 0.98043 1.67367 1.24962 1.11508 1.12471 1.23256 1.00831 0.92170 0.94167 1.22376 0.91148 1.01004 0.99866 1.22018 1.01562 0.96420 0.99233 1.20302 0.86958 0.95199 0.96416 1.86502 1.12680 1.51537 1.72282 1.23249 0.85707 0.97710 1.00704 1.22754 1.02866 0.93878 0.98131 1.22632 0.92085 1.00975 0.99396 0.91270 0.92947 0.93342 0.92094 0.92562 0.90925 0.93937 0.92448 0.94630 0.93095 0.79328 0.80369 0.81841 0.88942 0.91447 0.90558 0.88459 0.90335 0.90443 0.87146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.91 71.98 0.71 -2.73 16 2 C -0.11 -3.17 5.93 30.60 0.18 -2.99 16 3 C -0.13 -5.04 5.41 30.60 0.17 -4.88 16 4 C 0.14 6.07 5.14 86.38 0.44 6.51 16 5 N -0.54 -29.07 2.60 -635.55 -1.65 -30.72 16 6 C -0.31 -17.51 9.59 84.04 0.81 -16.70 16 7 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 8 C -0.03 -1.66 5.17 84.93 0.44 -1.22 16 9 N -0.89 -53.05 9.53 21.66 0.21 -52.85 16 10 Si 0.99 46.35 29.56 68.60 2.03 48.37 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 14 C 0.61 33.43 2.41 87.66 0.21 33.64 16 15 O -0.55 -34.92 14.89 16.96 0.25 -34.67 16 16 C -0.09 -4.24 1.08 -53.67 -0.06 -4.29 16 17 C 0.12 4.85 5.03 42.67 0.21 5.07 16 18 N -0.45 -14.76 8.84 -183.51 -1.62 -16.39 16 19 C 0.05 1.24 11.18 84.69 0.95 2.18 16 20 C -0.12 -2.42 10.11 22.34 0.23 -2.19 16 21 C -0.17 -4.11 9.13 22.56 0.21 -3.91 16 22 C 0.06 2.14 6.52 22.60 0.15 2.29 16 23 O -0.32 -12.96 7.41 -72.60 -0.54 -13.50 16 24 C 0.02 0.59 9.84 113.37 1.12 1.70 16 25 C -0.14 -6.29 9.91 30.59 0.30 -5.99 16 26 C -0.11 -5.02 8.00 30.59 0.24 -4.77 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 2.89 4.48 -2.39 -0.01 2.88 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 2.39 8.03 -2.39 -0.02 2.37 16 35 H 0.04 1.52 7.48 -2.39 -0.02 1.50 16 36 H 0.26 15.08 8.32 -92.71 -0.77 14.31 16 37 H 0.19 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.16 2.96 6.48 -2.91 -0.02 2.94 16 40 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.07 1.56 7.65 -2.39 -0.02 1.55 16 42 H 0.08 1.63 7.76 -2.38 -0.02 1.61 16 43 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 44 H 0.08 4.07 7.76 -2.39 -0.02 4.05 16 45 H 0.08 3.93 7.61 -2.39 -0.02 3.91 16 46 H 0.11 4.31 7.56 -2.38 -0.02 4.29 16 Total: -1.00 -76.85 370.70 5.95 -70.91 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.97 Total: 27.10 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 6.31 Total: 1.73 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -3.07 Total: -99.95 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -0.29 Total: -48.17 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Total: -76.85 5.95 -70.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178173662.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.018 kcal (2) G-P(sol) polarization free energy of solvation -76.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds