Wall clock time and date at job start Tue Mar 31 2020 12:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47136 * 2 1 4 4 C 1.53001 * 109.47293 * 179.97438 * 3 2 1 5 5 N 1.46490 * 109.47434 * 179.97438 * 4 3 2 6 6 C 1.37104 * 119.99794 * 96.96306 * 5 4 3 7 7 H 1.08008 * 119.99968 * 228.85713 * 6 5 4 8 8 C 1.38951 * 120.00140 * 48.86023 * 6 5 4 9 9 N 1.31403 * 120.00168 * 203.93721 * 8 6 5 10 10 Si 1.86801 * 119.99588 * 23.93748 * 8 6 5 11 11 H 1.48494 * 109.47364 * 84.37392 * 10 8 6 12 12 H 1.48501 * 109.46892 * 204.37785 * 10 8 6 13 13 H 1.48498 * 109.47130 * 324.37087 * 10 8 6 14 14 C 1.34770 * 120.00460 * 276.96757 * 5 4 3 15 15 O 1.21297 * 119.99854 * 3.58757 * 14 5 4 16 16 C 1.50698 * 120.00480 * 183.59157 * 14 5 4 17 17 H 1.09001 * 109.76649 * 38.13862 * 16 14 5 18 18 C 1.53425 * 109.77526 * 277.39406 * 16 14 5 19 19 N 1.46751 * 108.60234 * 177.20824 * 18 16 14 20 20 C 1.46893 * 111.00784 * 174.99948 * 19 18 16 21 21 C 1.39859 * 112.15738 * 50.18708 * 19 18 16 22 22 C 1.39137 * 118.58607 * 160.22968 * 21 19 18 23 23 C 1.38070 * 120.24088 * 179.54047 * 22 21 19 24 24 C 1.38254 * 120.11116 * 359.97438 * 23 22 21 25 25 C 1.38177 * 120.03065 * 0.08983 * 24 23 22 26 26 C 1.38777 * 120.21021 * 0.02562 * 25 24 23 27 27 O 1.36146 * 118.75955 * 179.77264 * 26 25 24 28 28 H 1.09002 * 109.46738 * 60.00249 * 1 2 3 29 29 H 1.08997 * 109.47127 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47078 * 300.00253 * 1 2 3 31 31 H 1.08992 * 109.47200 * 239.99294 * 2 1 3 32 32 H 1.09002 * 109.46738 * 119.99751 * 2 1 3 33 33 H 1.09003 * 109.47344 * 59.99909 * 3 2 1 34 34 H 1.09002 * 109.47103 * 299.99528 * 3 2 1 35 35 H 1.09001 * 109.47053 * 59.99371 * 4 3 2 36 36 H 1.09002 * 109.46882 * 299.99935 * 4 3 2 37 37 H 0.96999 * 119.99996 * 180.02562 * 9 8 6 38 38 H 1.08996 * 109.61509 * 296.88743 * 18 16 14 39 39 H 1.09003 * 109.61583 * 57.41986 * 18 16 14 40 40 H 1.09003 * 109.47313 * 290.58436 * 20 19 18 41 41 H 1.09006 * 109.47172 * 50.58154 * 20 19 18 42 42 H 1.09000 * 109.47367 * 170.57591 * 20 19 18 43 43 H 1.08000 * 119.88502 * 359.49536 * 22 21 19 44 44 H 1.07998 * 119.94789 * 180.02562 * 23 22 21 45 45 H 1.08005 * 119.98617 * 180.11249 * 24 23 22 46 46 H 1.08001 * 119.89820 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.4221 3.4226 1.1784 7 1 4.0488 4.4064 1.4219 8 6 5.2711 2.7640 2.0595 9 7 5.2594 3.0716 3.3370 10 14 6.4291 1.4414 1.4278 11 1 7.6684 2.0746 0.9098 12 1 6.7728 0.5141 2.5357 13 1 5.7667 0.6838 0.3359 14 6 4.1501 3.5055 -1.1588 15 8 3.7674 2.9990 -2.1924 16 6 4.7281 4.8972 -1.1706 17 1 5.5628 4.9556 -0.4720 18 6 3.6474 5.9115 -0.7740 19 7 4.2532 7.2473 -0.7286 20 6 3.2384 8.2772 -0.4692 21 6 4.9771 7.5380 -1.8894 22 6 5.2518 8.8692 -2.1869 23 6 5.9720 9.1944 -3.3191 24 6 6.4245 8.1975 -4.1634 25 6 6.1551 6.8730 -3.8763 26 6 5.4298 6.5380 -2.7415 27 8 5.1773 5.2241 -2.4897 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.9338 0.9284 -0.8891 36 1 3.9330 0.9288 0.8909 37 1 5.8523 2.6122 3.9519 38 1 2.8455 5.8992 -1.5122 39 1 3.2485 5.6561 0.2077 40 1 2.5885 8.3741 -1.3389 41 1 2.6439 7.9912 0.3985 42 1 3.7297 9.2306 -0.2746 43 1 4.8998 9.6510 -1.5302 44 1 6.1828 10.2291 -3.5452 45 1 6.9892 8.4540 -5.0476 46 1 6.5093 6.0960 -4.5375 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181967352.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:22 Heat of formation + Delta-G solvation = -31.667007 kcal Electronic energy + Delta-G solvation = -27746.088778 eV Core-core repulsion = 24022.369963 eV Total energy + Delta-G solvation = -3723.718816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90048 -38.95042 -37.06361 -36.42339 -35.44081 -34.13061 -32.03711 -30.91063 -30.19037 -28.98810 -28.33464 -25.62133 -24.82261 -24.15955 -23.09563 -21.82290 -20.75355 -20.27781 -19.09150 -18.01849 -17.54673 -16.81102 -16.01152 -15.62014 -15.26071 -14.91805 -14.79649 -14.55003 -14.35136 -14.07646 -13.96471 -13.84183 -13.62356 -13.17965 -13.13617 -12.67317 -12.57521 -12.30332 -11.97547 -11.96041 -11.91752 -11.66940 -11.45481 -11.34979 -11.11131 -10.86295 -10.76029 -10.67786 -10.38920 -10.31148 -10.03307 -9.87089 -9.73357 -9.24621 -8.68958 -8.28802 -7.77256 -7.37779 -6.62760 -4.32604 1.48361 1.60146 3.01755 3.12489 3.22581 3.25561 3.54134 3.74684 4.05716 4.08598 4.47182 4.76700 4.80467 4.95777 5.14096 5.25343 5.34286 5.35464 5.36988 5.41338 5.50475 5.51638 5.56512 5.59341 5.70221 5.82380 5.84423 5.97009 6.09276 6.09354 6.10925 6.16283 6.21011 6.25988 6.30418 6.37456 6.42107 6.49549 6.65138 6.78836 6.80724 6.89080 7.04068 7.22244 7.30870 7.74990 7.94449 8.12434 8.83640 9.15997 9.52397 10.46376 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.004344 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.067683 B = 6444.017523 C = 7016.425331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.129 4.129 4 C 0.117 3.883 5 N -0.455 5.455 6 C -0.365 4.365 7 H 0.102 0.898 8 C 0.083 3.917 9 N -0.845 5.845 10 Si 0.859 3.141 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.252 1.252 14 C 0.491 3.509 15 O -0.573 6.573 16 C 0.089 3.911 17 H 0.114 0.886 18 C 0.034 3.966 19 N -0.486 5.486 20 C 0.028 3.972 21 C 0.044 3.956 22 C -0.127 4.127 23 C -0.135 4.135 24 C -0.117 4.117 25 C -0.128 4.128 26 C 0.100 3.900 27 O -0.295 6.295 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.277 0.723 38 H 0.054 0.946 39 H 0.115 0.885 40 H 0.037 0.963 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.127 0.873 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.736 6.621 -6.557 9.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.168 4.168 4 C -0.005 4.005 5 N -0.176 5.176 6 C -0.492 4.492 7 H 0.120 0.880 8 C -0.127 4.127 9 N -0.478 5.478 10 Si 0.683 3.317 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.176 1.176 14 C 0.278 3.722 15 O -0.455 6.455 16 C 0.030 3.970 17 H 0.131 0.869 18 C -0.093 4.093 19 N -0.201 5.201 20 C -0.118 4.118 21 C -0.055 4.055 22 C -0.148 4.148 23 C -0.153 4.153 24 C -0.136 4.136 25 C -0.147 4.147 26 C 0.052 3.948 27 O -0.208 6.208 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.133 0.867 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.144 0.856 44 H 0.139 0.861 45 H 0.142 0.858 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.590 6.122 -6.493 9.292 hybrid contribution 0.270 -0.498 -0.214 0.605 sum -2.319 5.625 -6.707 9.055 Atomic orbital electron populations 1.21744 0.96268 1.00868 1.01678 1.21462 0.95480 0.97448 1.01613 1.21896 0.96405 0.96073 1.02388 1.21724 0.93339 0.84348 1.01135 1.43541 1.56785 1.11784 1.05534 1.19017 1.30521 1.05331 0.94301 0.88046 1.25450 0.95909 0.96966 0.94423 1.69798 1.35007 1.41131 1.01814 0.87241 0.82513 0.82109 0.79820 1.19715 1.20702 1.17613 1.19738 0.81742 0.86791 0.83880 1.90588 1.52000 1.70426 1.32519 1.22302 0.98535 0.93818 0.82370 0.86891 1.22679 0.95628 0.86700 1.04286 1.58712 1.25882 1.03820 1.31700 1.22493 0.93205 0.94764 1.01306 1.19020 1.01733 0.93755 0.90987 1.20834 1.01880 0.93761 0.98312 1.20808 1.00184 0.99091 0.95253 1.20787 1.01119 0.91744 0.99996 1.20442 1.00120 0.97033 0.97122 1.18813 0.98221 0.82784 0.95026 1.86271 1.81499 1.20869 1.32134 0.92975 0.93292 0.92831 0.92329 0.92194 0.91460 0.91969 0.92086 0.90989 0.91251 0.92775 0.86700 0.94446 0.90273 0.90411 0.85559 0.86134 0.85793 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.86 5.93 -26.73 -0.16 -2.02 16 3 C -0.13 -2.39 5.48 -26.73 -0.15 -2.54 16 4 C 0.12 2.49 3.35 -4.05 -0.01 2.48 16 5 N -0.45 -10.51 1.94 -114.81 -0.22 -10.73 16 6 C -0.37 -8.92 8.18 -14.93 -0.12 -9.04 16 7 H 0.10 2.57 6.25 -52.48 -0.33 2.24 16 8 C 0.08 2.08 5.13 -17.47 -0.09 1.99 16 9 N -0.84 -22.11 13.96 55.50 0.77 -21.34 16 10 Si 0.86 19.45 26.72 -169.99 -4.54 14.91 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.25 -5.57 5.41 56.52 0.31 -5.27 16 14 C 0.49 11.51 6.85 -10.99 -0.08 11.43 16 15 O -0.57 -14.63 16.19 -13.19 -0.21 -14.84 16 16 C 0.09 1.90 2.68 -27.66 -0.07 1.83 16 17 H 0.11 2.54 7.41 -51.93 -0.38 2.15 16 18 C 0.03 0.63 4.86 -3.69 -0.02 0.61 16 19 N -0.49 -8.15 4.89 -178.67 -0.87 -9.02 16 20 C 0.03 0.36 8.85 60.06 0.53 0.89 16 21 C 0.04 0.73 5.81 -83.59 -0.49 0.25 16 22 C -0.13 -1.75 9.07 -39.31 -0.36 -2.11 16 23 C -0.13 -1.65 10.03 -39.64 -0.40 -2.05 16 24 C -0.12 -1.50 10.04 -39.60 -0.40 -1.89 16 25 C -0.13 -1.99 9.94 -39.40 -0.39 -2.38 16 26 C 0.10 1.84 6.47 -39.11 -0.25 1.58 16 27 O -0.29 -6.32 9.69 -38.93 -0.38 -6.70 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.22 7.95 -51.93 -0.41 0.80 16 35 H 0.06 1.32 7.59 -51.93 -0.39 0.93 16 36 H 0.07 1.53 5.33 -51.93 -0.28 1.26 16 37 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 39 H 0.11 2.14 6.40 -51.93 -0.33 1.81 16 40 H 0.04 0.45 8.13 -51.93 -0.42 0.03 16 41 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 42 H 0.08 0.84 6.41 -51.93 -0.33 0.50 16 43 H 0.13 1.45 6.12 -52.49 -0.32 1.13 16 44 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 46 H 0.13 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -28.91 364.72 -9.12 -38.03 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -7.08 Total: 6.73 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.08 Total: -2.53 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: -0.32 Total: -41.09 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.59 Total: -21.54 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.54 Total: 14.91 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.91 -9.12 -38.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181967352.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.359 kcal (2) G-P(sol) polarization free energy of solvation -28.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds