Wall clock time and date at job start Tue Mar 31 2020 12:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47136 * 2 1 4 4 C 1.53001 * 109.47293 * 179.97438 * 3 2 1 5 5 N 1.46490 * 109.47434 * 179.97438 * 4 3 2 6 6 C 1.37104 * 119.99794 * 96.96306 * 5 4 3 7 7 H 1.08008 * 119.99968 * 228.85713 * 6 5 4 8 8 C 1.38951 * 120.00140 * 48.86023 * 6 5 4 9 9 N 1.31403 * 120.00168 * 203.93721 * 8 6 5 10 10 Si 1.86801 * 119.99588 * 23.93748 * 8 6 5 11 11 H 1.48494 * 109.47364 * 84.37392 * 10 8 6 12 12 H 1.48501 * 109.46892 * 204.37785 * 10 8 6 13 13 H 1.48498 * 109.47130 * 324.37087 * 10 8 6 14 14 C 1.34770 * 120.00460 * 276.96757 * 5 4 3 15 15 O 1.21297 * 119.99854 * 3.58757 * 14 5 4 16 16 C 1.50698 * 120.00480 * 183.59157 * 14 5 4 17 17 H 1.09001 * 109.76649 * 38.13862 * 16 14 5 18 18 C 1.53425 * 109.77526 * 277.39406 * 16 14 5 19 19 N 1.46751 * 108.60234 * 177.20824 * 18 16 14 20 20 C 1.46893 * 111.00784 * 174.99948 * 19 18 16 21 21 C 1.39859 * 112.15738 * 50.18708 * 19 18 16 22 22 C 1.39137 * 118.58607 * 160.22968 * 21 19 18 23 23 C 1.38070 * 120.24088 * 179.54047 * 22 21 19 24 24 C 1.38254 * 120.11116 * 359.97438 * 23 22 21 25 25 C 1.38177 * 120.03065 * 0.08983 * 24 23 22 26 26 C 1.38777 * 120.21021 * 0.02562 * 25 24 23 27 27 O 1.36146 * 118.75955 * 179.77264 * 26 25 24 28 28 H 1.09002 * 109.46738 * 60.00249 * 1 2 3 29 29 H 1.08997 * 109.47127 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47078 * 300.00253 * 1 2 3 31 31 H 1.08992 * 109.47200 * 239.99294 * 2 1 3 32 32 H 1.09002 * 109.46738 * 119.99751 * 2 1 3 33 33 H 1.09003 * 109.47344 * 59.99909 * 3 2 1 34 34 H 1.09002 * 109.47103 * 299.99528 * 3 2 1 35 35 H 1.09001 * 109.47053 * 59.99371 * 4 3 2 36 36 H 1.09002 * 109.46882 * 299.99935 * 4 3 2 37 37 H 0.96999 * 119.99996 * 180.02562 * 9 8 6 38 38 H 1.08996 * 109.61509 * 296.88743 * 18 16 14 39 39 H 1.09003 * 109.61583 * 57.41986 * 18 16 14 40 40 H 1.09003 * 109.47313 * 290.58436 * 20 19 18 41 41 H 1.09006 * 109.47172 * 50.58154 * 20 19 18 42 42 H 1.09000 * 109.47367 * 170.57591 * 20 19 18 43 43 H 1.08000 * 119.88502 * 359.49536 * 22 21 19 44 44 H 1.07998 * 119.94789 * 180.02562 * 23 22 21 45 45 H 1.08005 * 119.98617 * 180.11249 * 24 23 22 46 46 H 1.08001 * 119.89820 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.4221 3.4226 1.1784 7 1 4.0488 4.4064 1.4219 8 6 5.2711 2.7640 2.0595 9 7 5.2594 3.0716 3.3370 10 14 6.4291 1.4414 1.4278 11 1 7.6684 2.0746 0.9098 12 1 6.7728 0.5141 2.5357 13 1 5.7667 0.6838 0.3359 14 6 4.1501 3.5055 -1.1588 15 8 3.7674 2.9990 -2.1924 16 6 4.7281 4.8972 -1.1706 17 1 5.5628 4.9556 -0.4720 18 6 3.6474 5.9115 -0.7740 19 7 4.2532 7.2473 -0.7286 20 6 3.2384 8.2772 -0.4692 21 6 4.9771 7.5380 -1.8894 22 6 5.2518 8.8692 -2.1869 23 6 5.9720 9.1944 -3.3191 24 6 6.4245 8.1975 -4.1634 25 6 6.1551 6.8730 -3.8763 26 6 5.4298 6.5380 -2.7415 27 8 5.1773 5.2241 -2.4897 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.9338 0.9284 -0.8891 36 1 3.9330 0.9288 0.8909 37 1 5.8523 2.6122 3.9519 38 1 2.8455 5.8992 -1.5122 39 1 3.2485 5.6561 0.2077 40 1 2.5885 8.3741 -1.3389 41 1 2.6439 7.9912 0.3985 42 1 3.7297 9.2306 -0.2746 43 1 4.8998 9.6510 -1.5302 44 1 6.1828 10.2291 -3.5452 45 1 6.9892 8.4540 -5.0476 46 1 6.5093 6.0960 -4.5375 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181967352.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:21 Heat of formation + Delta-G solvation = -47.424353 kcal Electronic energy + Delta-G solvation = -27746.772068 eV Core-core repulsion = 24022.369963 eV Total energy + Delta-G solvation = -3724.402105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.28651 -40.67123 -38.43419 -37.67122 -37.18700 -35.69093 -33.95205 -32.33865 -31.34408 -30.26227 -29.69008 -27.17991 -26.47029 -25.48130 -24.57175 -22.98352 -22.11130 -21.71952 -20.83798 -19.44894 -19.19868 -18.31219 -17.70483 -17.05801 -16.93055 -16.32715 -16.20907 -16.02378 -15.65890 -15.58210 -15.38351 -15.08917 -15.00637 -14.73872 -14.59462 -14.26380 -14.07963 -13.80986 -13.46514 -13.17248 -13.11521 -12.99784 -12.92591 -12.85864 -12.53419 -12.24971 -12.17946 -12.07844 -11.90865 -11.75768 -11.67481 -11.43124 -11.13367 -10.93770 -10.57079 -9.68582 -9.47439 -8.63227 -8.59288 -6.30815 0.36591 0.43788 1.18295 1.29039 1.39264 1.51177 1.90332 2.16778 2.43868 2.74351 2.90030 3.01414 3.44068 3.62842 3.80022 3.83840 4.00614 4.07221 4.16371 4.24406 4.27560 4.32018 4.39697 4.40165 4.43612 4.51606 4.54448 4.60004 4.61802 4.77385 4.84998 4.90546 4.94350 4.95321 5.05586 5.12855 5.23084 5.29619 5.35994 5.40365 5.48993 5.58411 5.75024 5.81407 5.97030 6.04365 6.16239 6.41627 6.88243 7.23687 7.61820 8.52491 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.004344 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.067683 B = 6444.017523 C = 7016.425331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.119 4.119 4 C 0.111 3.889 5 N -0.458 5.458 6 C -0.359 4.359 7 H 0.087 0.913 8 C 0.054 3.946 9 N -0.875 5.875 10 Si 0.899 3.101 11 H -0.281 1.281 12 H -0.269 1.269 13 H -0.246 1.246 14 C 0.487 3.513 15 O -0.598 6.598 16 C 0.095 3.905 17 H 0.093 0.907 18 C 0.049 3.951 19 N -0.499 5.499 20 C 0.026 3.974 21 C 0.024 3.976 22 C -0.126 4.126 23 C -0.120 4.120 24 C -0.109 4.109 25 C -0.140 4.140 26 C 0.050 3.950 27 O -0.322 6.322 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.282 0.718 38 H 0.047 0.953 39 H 0.107 0.893 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.153 0.847 44 H 0.163 0.837 45 H 0.161 0.839 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 8.189 -7.366 11.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.157 4.157 4 C -0.011 4.011 5 N -0.179 5.179 6 C -0.486 4.486 7 H 0.104 0.896 8 C -0.154 4.154 9 N -0.509 5.509 10 Si 0.722 3.278 11 H -0.208 1.208 12 H -0.193 1.193 13 H -0.170 1.170 14 C 0.275 3.725 15 O -0.483 6.483 16 C 0.035 3.965 17 H 0.110 0.890 18 C -0.078 4.078 19 N -0.214 5.214 20 C -0.119 4.119 21 C -0.075 4.075 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.128 4.128 25 C -0.159 4.159 26 C 0.004 3.996 27 O -0.236 6.236 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.125 0.875 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.170 0.830 44 H 0.181 0.819 45 H 0.178 0.822 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.507 7.700 -7.296 10.900 hybrid contribution 0.295 -0.826 -0.058 0.879 sum -2.212 6.875 -7.355 10.307 Atomic orbital electron populations 1.21715 0.94332 1.02394 1.01736 1.21461 0.97172 0.94840 1.02228 1.21790 0.94296 0.98417 1.01211 1.21855 0.95274 0.83216 1.00736 1.43650 1.56701 1.12433 1.05093 1.18895 1.30435 1.04922 0.94338 0.89574 1.25850 0.96633 0.98544 0.94407 1.69829 1.35990 1.42547 1.02548 0.86601 0.80604 0.80673 0.79877 1.20750 1.19323 1.17012 1.20131 0.81255 0.87624 0.83497 1.90549 1.53230 1.71252 1.33276 1.22027 0.98374 0.93391 0.82707 0.88983 1.22405 0.94477 0.87727 1.03239 1.58767 1.26922 1.03471 1.32240 1.22654 0.92844 0.94647 1.01776 1.19288 1.02326 0.94850 0.90994 1.21218 1.01490 0.92763 0.99212 1.21344 0.97776 1.01012 0.93727 1.21241 1.00199 0.90321 1.01016 1.20725 1.00026 0.98767 0.96359 1.19307 1.01162 0.81896 0.97280 1.86205 1.82473 1.23352 1.31619 0.93091 0.91018 0.92664 0.91909 0.91383 0.92214 0.93434 0.92683 0.90925 0.90744 0.93437 0.87517 0.93814 0.89785 0.87836 0.82951 0.81946 0.82158 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.91 71.98 0.71 -2.82 16 2 C -0.12 -3.51 5.93 30.60 0.18 -3.33 16 3 C -0.12 -4.46 5.48 30.59 0.17 -4.29 16 4 C 0.11 4.83 3.35 86.38 0.29 5.12 16 5 N -0.46 -21.90 1.94 -635.55 -1.23 -23.13 16 6 C -0.36 -18.13 8.18 84.04 0.69 -17.45 16 7 H 0.09 4.58 6.25 -2.91 -0.02 4.56 16 8 C 0.05 2.73 5.13 84.93 0.44 3.17 16 9 N -0.87 -46.39 13.96 21.66 0.30 -46.09 16 10 Si 0.90 40.32 26.72 68.60 1.83 42.16 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 H -0.25 -10.74 5.41 99.48 0.54 -10.21 16 14 C 0.49 23.90 6.85 87.66 0.60 24.50 16 15 O -0.60 -31.89 16.19 14.83 0.24 -31.65 16 16 C 0.09 4.27 2.68 29.99 0.08 4.35 16 17 H 0.09 4.44 7.41 -2.39 -0.02 4.42 16 18 C 0.05 1.90 4.86 86.47 0.42 2.32 16 19 N -0.50 -16.80 4.89 -719.17 -3.51 -20.32 16 20 C 0.03 0.62 8.85 127.69 1.13 1.75 16 21 C 0.02 0.78 5.81 38.25 0.22 1.00 16 22 C -0.13 -3.12 9.07 22.45 0.20 -2.91 16 23 C -0.12 -2.44 10.03 22.23 0.22 -2.22 16 24 C -0.11 -2.43 10.04 22.26 0.22 -2.21 16 25 C -0.14 -4.28 9.94 22.38 0.22 -4.06 16 26 C 0.05 1.89 6.47 22.57 0.15 2.04 16 27 O -0.32 -14.57 9.69 -77.30 -0.75 -15.32 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.05 1.91 7.95 -2.39 -0.02 1.89 16 35 H 0.05 2.43 7.59 -2.39 -0.02 2.41 16 36 H 0.07 3.11 5.33 -2.39 -0.01 3.09 16 37 H 0.28 13.99 8.31 -92.71 -0.77 13.21 16 38 H 0.05 1.86 8.13 -2.39 -0.02 1.84 16 39 H 0.11 4.22 6.40 -2.39 -0.02 4.20 16 40 H 0.04 1.00 8.13 -2.39 -0.02 0.98 16 41 H 0.08 1.92 8.09 -2.38 -0.02 1.90 16 42 H 0.10 1.93 6.41 -2.39 -0.02 1.92 16 43 H 0.15 2.88 6.12 -2.91 -0.02 2.86 16 44 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 45 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 46 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -64.95 364.72 3.63 -61.32 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.80 Total: 28.05 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 5.95 Total: 4.98 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -4.44 Total: -89.54 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -0.51 Total: -46.97 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 1.83 Total: 42.16 kcal Total: -64.95 3.63 -61.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181967352.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.897 kcal (2) G-P(sol) polarization free energy of solvation -64.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds