Wall clock time and date at job start Tue Mar 31 2020 12:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46907 * 2 1 4 4 C 1.53001 * 109.46970 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47085 * 180.02562 * 4 3 2 6 6 C 1.37098 * 119.99710 * 264.40092 * 5 4 3 7 7 H 1.07990 * 120.00159 * 140.91277 * 6 5 4 8 8 C 1.38956 * 119.99760 * 320.91699 * 6 5 4 9 9 N 1.31405 * 119.99957 * 340.98712 * 8 6 5 10 10 Si 1.86807 * 119.99754 * 160.98821 * 8 6 5 11 11 H 1.48498 * 109.46794 * 89.99693 * 10 8 6 12 12 H 1.48494 * 109.46712 * 209.99747 * 10 8 6 13 13 H 1.48497 * 109.46862 * 329.99773 * 10 8 6 14 14 C 1.34774 * 120.00325 * 84.39972 * 5 4 3 15 15 O 1.21291 * 119.99598 * 5.82362 * 14 5 4 16 16 C 1.50696 * 120.00099 * 185.82286 * 14 5 4 17 17 H 1.09002 * 109.47216 * 37.76089 * 16 14 5 18 18 C 1.53001 * 109.47120 * 277.76616 * 16 14 5 19 19 C 1.50695 * 109.47136 * 157.76094 * 16 14 5 20 20 C 1.38356 * 119.85523 * 239.99901 * 19 16 14 21 21 C 1.37959 * 120.14753 * 180.02562 * 20 19 16 22 22 C 1.39581 * 119.85096 * 359.97438 * 21 20 19 23 23 C 1.47846 * 120.14278 * 179.97438 * 22 21 20 24 24 N 1.34779 * 119.99848 * 179.97438 * 23 22 21 25 25 O 1.21554 * 120.00208 * 359.72471 * 23 22 21 26 26 C 1.39577 * 119.70958 * 0.25046 * 22 21 20 27 27 C 1.37949 * 119.85376 * 359.51667 * 26 22 21 28 28 H 1.08996 * 109.46923 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47089 * 300.00088 * 1 2 3 30 30 H 1.09001 * 109.47110 * 60.00095 * 1 2 3 31 31 H 1.08991 * 109.46830 * 239.99593 * 2 1 3 32 32 H 1.09001 * 109.47110 * 119.99905 * 2 1 3 33 33 H 1.09003 * 109.47318 * 60.00052 * 3 2 1 34 34 H 1.09001 * 109.47158 * 299.99875 * 3 2 1 35 35 H 1.08993 * 109.47240 * 59.99929 * 4 3 2 36 36 H 1.09001 * 109.46883 * 299.99805 * 4 3 2 37 37 H 0.97008 * 119.99679 * 180.02562 * 9 8 6 38 38 H 1.09002 * 109.46971 * 181.56169 * 18 16 14 39 39 H 1.09005 * 109.46738 * 301.55174 * 18 16 14 40 40 H 1.08993 * 109.47600 * 61.55031 * 18 16 14 41 41 H 1.07995 * 119.92673 * 0.02712 * 20 19 16 42 42 H 1.08003 * 120.07827 * 179.97438 * 21 20 19 43 43 H 0.97000 * 119.99782 * 179.72274 * 24 23 22 44 44 H 0.97002 * 120.00024 * 359.72627 * 24 23 22 45 45 H 1.08005 * 120.06905 * 179.72392 * 26 22 21 46 46 H 1.08007 * 119.93001 * 180.23334 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.3955 3.4321 -1.1815 7 1 4.1514 4.4716 -1.3425 8 6 5.0514 2.7110 -2.1718 9 7 5.6760 1.5956 -1.8678 10 14 5.0453 3.3274 -3.9352 11 1 6.2157 4.2149 -4.1534 12 1 5.1208 2.1711 -4.8639 13 1 3.7944 4.0861 -4.1900 14 6 4.1761 3.4965 1.1619 15 8 3.9796 2.9272 2.2147 16 6 4.5519 4.9558 1.1530 17 1 4.0687 5.4503 0.3103 18 6 6.0702 5.0906 1.0210 19 6 4.1003 5.5987 2.4389 20 6 3.2025 6.6509 2.4047 21 6 2.7854 7.2442 3.5783 22 6 3.2708 6.7804 4.8020 23 6 2.8285 7.4118 6.0636 24 7 3.2986 6.9613 7.2436 25 8 2.0445 8.3403 6.0363 26 6 4.1798 5.7216 4.8292 27 6 4.5851 5.1340 3.6487 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9286 0.8891 37 1 6.1342 1.0924 -2.5591 38 1 6.3445 6.1453 1.0425 39 1 6.5543 4.5725 1.8490 40 1 6.3936 4.6501 0.0780 41 1 2.8274 7.0085 1.4572 42 1 2.0849 8.0658 3.5502 43 1 3.0116 7.3782 8.0711 44 1 3.9241 6.2201 7.2654 45 1 4.5625 5.3609 5.7726 46 1 5.2856 4.3121 3.6685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182783786.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:35 Heat of formation + Delta-G solvation = -67.920643 kcal Electronic energy + Delta-G solvation = -26885.278698 eV Core-core repulsion = 23159.987807 eV Total energy + Delta-G solvation = -3725.290891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.10646 -39.11971 -37.80085 -35.43026 -34.06782 -33.94630 -33.17747 -31.54446 -30.66317 -29.46467 -28.19963 -25.02836 -24.63000 -23.46976 -22.41190 -21.71608 -20.53204 -20.09160 -19.03777 -18.14598 -17.04058 -16.68342 -16.12731 -15.19600 -14.94947 -14.80232 -14.71805 -14.56338 -14.43709 -14.04290 -13.89194 -13.47516 -13.20372 -13.09748 -12.88400 -12.39905 -12.25794 -12.05546 -11.93954 -11.65195 -11.42490 -11.23365 -11.17632 -11.00640 -10.72291 -10.58593 -10.54394 -10.48901 -10.37114 -10.18634 -10.02628 -9.80957 -9.74277 -9.13312 -8.79569 -8.52344 -8.28855 -7.51712 -6.43054 -4.14771 1.03313 1.66307 2.96710 3.06234 3.17263 3.20226 3.47988 3.83208 4.01441 4.12546 4.66851 4.85082 4.89370 4.99715 5.19679 5.21245 5.45782 5.49661 5.58898 5.63583 5.70805 5.87331 5.90153 5.93697 6.04609 6.15396 6.22110 6.28167 6.34147 6.37394 6.43724 6.45523 6.50177 6.56331 6.58238 6.68342 6.69459 6.79932 6.86133 7.00702 7.07774 7.15859 7.26499 7.31934 7.42139 7.92313 8.19992 8.30179 9.01492 9.45740 9.88889 10.59115 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.003663 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.768823 B = 7642.115625 C = 8831.624713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.120 3.880 5 N -0.436 5.436 6 C -0.342 4.342 7 H 0.088 0.912 8 C 0.048 3.952 9 N -0.858 5.858 10 Si 0.909 3.091 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.481 3.519 15 O -0.598 6.598 16 C -0.063 4.063 17 H 0.095 0.905 18 C -0.128 4.128 19 C -0.024 4.024 20 C -0.127 4.127 21 C -0.064 4.064 22 C -0.157 4.157 23 C 0.568 3.432 24 N -0.854 5.854 25 O -0.549 6.549 26 C -0.092 4.092 27 C -0.084 4.084 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.269 0.731 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.401 0.599 44 H 0.401 0.599 45 H 0.120 0.880 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.624 4.183 7.464 8.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.167 4.167 4 C -0.003 4.003 5 N -0.153 5.153 6 C -0.470 4.470 7 H 0.106 0.894 8 C -0.159 4.159 9 N -0.494 5.494 10 Si 0.735 3.265 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.269 3.731 15 O -0.484 6.484 16 C -0.084 4.084 17 H 0.113 0.887 18 C -0.186 4.186 19 C -0.025 4.025 20 C -0.145 4.145 21 C -0.083 4.083 22 C -0.160 4.160 23 C 0.355 3.645 24 N -0.418 5.418 25 O -0.428 6.428 26 C -0.111 4.111 27 C -0.102 4.102 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.232 0.768 44 H 0.231 0.769 45 H 0.138 0.862 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.105 4.291 7.647 9.017 hybrid contribution 0.219 -0.070 -0.684 0.722 sum -1.885 4.221 6.963 8.358 Atomic orbital electron populations 1.21759 0.96633 1.00690 1.01487 1.21422 0.94979 0.97714 1.01582 1.21926 0.97980 0.95531 1.01294 1.21328 0.90830 0.84970 1.03210 1.43356 1.55211 1.11841 1.04868 1.19339 1.37687 0.97607 0.92371 0.89434 1.25335 0.94056 0.96303 1.00183 1.69940 1.29335 1.16221 1.33903 0.86227 0.78978 0.78609 0.82669 1.20176 1.20747 1.19318 1.20110 0.80498 0.88385 0.84096 1.90524 1.56363 1.70199 1.31300 1.20125 0.98520 0.95186 0.94556 0.88685 1.21600 0.92436 1.00867 1.03694 1.20011 0.93846 0.93371 0.95230 1.21070 0.98295 0.96957 0.98219 1.21105 0.97748 0.98593 0.90855 1.19718 1.02822 1.00301 0.93159 1.18401 0.79701 0.82120 0.84228 1.43770 1.50398 1.39245 1.08391 1.90778 1.35112 1.29209 1.87689 1.21190 0.96527 0.94934 0.98445 1.21015 0.99901 0.98217 0.91085 0.93413 0.93098 0.93032 0.92265 0.92424 0.92973 0.92357 0.88201 0.92966 0.92034 0.93016 0.92975 0.89924 0.85473 0.85162 0.76825 0.76878 0.86226 0.84904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.12 -1.96 5.93 -26.73 -0.16 -2.11 16 3 C -0.13 -2.54 5.50 -26.73 -0.15 -2.69 16 4 C 0.12 2.74 4.92 -4.04 -0.02 2.72 16 5 N -0.44 -10.28 2.52 -114.81 -0.29 -10.57 16 6 C -0.34 -8.05 7.71 -14.93 -0.12 -8.17 16 7 H 0.09 1.96 6.55 -52.49 -0.34 1.62 16 8 C 0.05 1.13 4.95 -17.47 -0.09 1.04 16 9 N -0.86 -21.52 11.51 55.50 0.64 -20.88 16 10 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 11 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 12 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 13 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 14 C 0.48 10.91 6.71 -10.99 -0.07 10.83 16 15 O -0.60 -14.65 14.20 5.55 0.08 -14.57 16 16 C -0.06 -1.17 2.19 -92.93 -0.20 -1.37 16 17 H 0.10 1.73 6.41 -51.93 -0.33 1.39 16 18 C -0.13 -2.22 8.88 37.16 0.33 -1.89 16 19 C -0.02 -0.41 4.63 -104.53 -0.48 -0.89 16 20 C -0.13 -1.96 9.65 -39.64 -0.38 -2.34 16 21 C -0.06 -0.96 9.60 -39.18 -0.38 -1.34 16 22 C -0.16 -2.27 5.87 -104.97 -0.62 -2.89 16 23 C 0.57 7.89 8.05 -12.33 -0.10 7.79 16 24 N -0.85 -7.89 8.82 30.53 0.27 -7.62 16 25 O -0.55 -9.48 17.18 5.32 0.09 -9.39 16 26 C -0.09 -1.26 9.54 -39.19 -0.37 -1.64 16 27 C -0.08 -1.37 7.86 -39.64 -0.31 -1.68 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.10 2.42 5.63 -51.93 -0.29 2.13 16 36 H 0.05 1.26 7.52 -51.93 -0.39 0.86 16 37 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.89 7.43 -51.93 -0.39 0.51 16 40 H 0.08 1.59 7.24 -51.93 -0.38 1.22 16 41 H 0.13 1.73 7.94 -52.49 -0.42 1.31 16 42 H 0.13 1.85 7.65 -52.48 -0.40 1.45 16 43 H 0.40 2.99 8.93 -40.82 -0.36 2.62 16 44 H 0.40 2.75 6.86 -40.82 -0.28 2.47 16 45 H 0.12 1.20 6.41 -52.48 -0.34 0.87 16 46 H 0.13 2.27 6.95 -52.48 -0.36 1.91 16 LS Contribution 376.01 15.07 5.67 5.67 Total: -1.00 -29.78 376.01 -8.13 -37.90 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -6.80 Total: 12.38 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.75 Total: -6.33 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.62 Total: -39.07 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.17 Total: -23.96 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.78 -8.13 -37.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182783786.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.019 kcal (2) G-P(sol) polarization free energy of solvation -29.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds