Wall clock time and date at job start Tue Mar 31 2020 12:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46907 * 2 1 4 4 C 1.53001 * 109.46970 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47085 * 180.02562 * 4 3 2 6 6 C 1.37098 * 119.99710 * 264.40092 * 5 4 3 7 7 H 1.07990 * 120.00159 * 140.91277 * 6 5 4 8 8 C 1.38956 * 119.99760 * 320.91699 * 6 5 4 9 9 N 1.31405 * 119.99957 * 340.98712 * 8 6 5 10 10 Si 1.86807 * 119.99754 * 160.98821 * 8 6 5 11 11 H 1.48498 * 109.46794 * 89.99693 * 10 8 6 12 12 H 1.48494 * 109.46712 * 209.99747 * 10 8 6 13 13 H 1.48497 * 109.46862 * 329.99773 * 10 8 6 14 14 C 1.34774 * 120.00325 * 84.39972 * 5 4 3 15 15 O 1.21291 * 119.99598 * 5.82362 * 14 5 4 16 16 C 1.50696 * 120.00099 * 185.82286 * 14 5 4 17 17 H 1.09002 * 109.47216 * 37.76089 * 16 14 5 18 18 C 1.53001 * 109.47120 * 277.76616 * 16 14 5 19 19 C 1.50695 * 109.47136 * 157.76094 * 16 14 5 20 20 C 1.38356 * 119.85523 * 239.99901 * 19 16 14 21 21 C 1.37959 * 120.14753 * 180.02562 * 20 19 16 22 22 C 1.39581 * 119.85096 * 359.97438 * 21 20 19 23 23 C 1.47846 * 120.14278 * 179.97438 * 22 21 20 24 24 N 1.34779 * 119.99848 * 179.97438 * 23 22 21 25 25 O 1.21554 * 120.00208 * 359.72471 * 23 22 21 26 26 C 1.39577 * 119.70958 * 0.25046 * 22 21 20 27 27 C 1.37949 * 119.85376 * 359.51667 * 26 22 21 28 28 H 1.08996 * 109.46923 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47089 * 300.00088 * 1 2 3 30 30 H 1.09001 * 109.47110 * 60.00095 * 1 2 3 31 31 H 1.08991 * 109.46830 * 239.99593 * 2 1 3 32 32 H 1.09001 * 109.47110 * 119.99905 * 2 1 3 33 33 H 1.09003 * 109.47318 * 60.00052 * 3 2 1 34 34 H 1.09001 * 109.47158 * 299.99875 * 3 2 1 35 35 H 1.08993 * 109.47240 * 59.99929 * 4 3 2 36 36 H 1.09001 * 109.46883 * 299.99805 * 4 3 2 37 37 H 0.97008 * 119.99679 * 180.02562 * 9 8 6 38 38 H 1.09002 * 109.46971 * 181.56169 * 18 16 14 39 39 H 1.09005 * 109.46738 * 301.55174 * 18 16 14 40 40 H 1.08993 * 109.47600 * 61.55031 * 18 16 14 41 41 H 1.07995 * 119.92673 * 0.02712 * 20 19 16 42 42 H 1.08003 * 120.07827 * 179.97438 * 21 20 19 43 43 H 0.97000 * 119.99782 * 179.72274 * 24 23 22 44 44 H 0.97002 * 120.00024 * 359.72627 * 24 23 22 45 45 H 1.08005 * 120.06905 * 179.72392 * 26 22 21 46 46 H 1.08007 * 119.93001 * 180.23334 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.3955 3.4321 -1.1815 7 1 4.1514 4.4716 -1.3425 8 6 5.0514 2.7110 -2.1718 9 7 5.6760 1.5956 -1.8678 10 14 5.0453 3.3274 -3.9352 11 1 6.2157 4.2149 -4.1534 12 1 5.1208 2.1711 -4.8639 13 1 3.7944 4.0861 -4.1900 14 6 4.1761 3.4965 1.1619 15 8 3.9796 2.9272 2.2147 16 6 4.5519 4.9558 1.1530 17 1 4.0687 5.4503 0.3103 18 6 6.0702 5.0906 1.0210 19 6 4.1003 5.5987 2.4389 20 6 3.2025 6.6509 2.4047 21 6 2.7854 7.2442 3.5783 22 6 3.2708 6.7804 4.8020 23 6 2.8285 7.4118 6.0636 24 7 3.2986 6.9613 7.2436 25 8 2.0445 8.3403 6.0363 26 6 4.1798 5.7216 4.8292 27 6 4.5851 5.1340 3.6487 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9286 0.8891 37 1 6.1342 1.0924 -2.5591 38 1 6.3445 6.1453 1.0425 39 1 6.5543 4.5725 1.8490 40 1 6.3936 4.6501 0.0780 41 1 2.8274 7.0085 1.4572 42 1 2.0849 8.0658 3.5502 43 1 3.0116 7.3782 8.0711 44 1 3.9241 6.2201 7.2654 45 1 4.5625 5.3609 5.7726 46 1 5.2856 4.3121 3.6685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182783786.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:34 Heat of formation + Delta-G solvation = -85.344684 kcal Electronic energy + Delta-G solvation = -26886.034261 eV Core-core repulsion = 23159.987807 eV Total energy + Delta-G solvation = -3726.046454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36986 -40.60019 -39.14914 -37.10502 -35.64548 -35.10079 -34.45896 -33.34498 -31.83063 -30.77097 -29.69219 -26.82585 -26.01511 -24.88175 -23.59192 -23.07851 -21.95339 -21.40890 -20.75984 -19.17951 -18.55819 -18.02168 -17.62621 -16.76592 -16.36939 -16.18714 -15.98089 -15.89458 -15.80760 -15.58063 -15.36945 -14.75547 -14.63345 -14.47937 -14.13030 -13.87611 -13.69742 -13.50121 -13.30693 -13.16969 -13.01233 -12.85209 -12.62475 -12.54140 -12.16394 -12.06231 -12.00379 -11.92761 -11.84419 -11.71957 -11.41482 -11.19054 -10.93046 -10.74552 -10.26005 -9.84736 -9.69500 -9.36375 -8.25200 -6.02267 -0.14918 0.48180 1.44447 1.51575 1.61053 1.82506 2.08258 2.35681 2.54563 2.83055 3.05919 3.14856 3.72179 3.86898 3.96098 4.05320 4.07037 4.13603 4.28362 4.34788 4.41239 4.45313 4.54864 4.58558 4.60575 4.84039 4.87518 4.88278 4.96288 4.99786 5.05402 5.09569 5.13767 5.17748 5.27988 5.34420 5.36462 5.42684 5.45733 5.50969 5.58400 5.73517 5.85480 5.95746 6.11677 6.38534 6.46251 7.17795 7.26706 7.64823 8.07937 8.77981 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.003663 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.768823 B = 7642.115625 C = 8831.624713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.115 4.115 4 C 0.123 3.877 5 N -0.450 5.450 6 C -0.350 4.350 7 H 0.098 0.902 8 C 0.009 3.991 9 N -0.893 5.893 10 Si 0.973 3.027 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.261 1.261 14 C 0.470 3.530 15 O -0.623 6.623 16 C -0.055 4.055 17 H 0.099 0.901 18 C -0.119 4.119 19 C -0.043 4.043 20 C -0.128 4.128 21 C -0.070 4.070 22 C -0.159 4.159 23 C 0.567 3.433 24 N -0.829 5.829 25 O -0.588 6.588 26 C -0.080 4.080 27 C -0.099 4.099 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.037 0.963 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.029 0.971 37 H 0.270 0.730 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.142 0.858 42 H 0.136 0.864 43 H 0.414 0.586 44 H 0.416 0.584 45 H 0.157 0.843 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 5.149 7.893 9.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.153 4.153 4 C -0.001 4.001 5 N -0.167 5.167 6 C -0.477 4.477 7 H 0.115 0.885 8 C -0.194 4.194 9 N -0.530 5.530 10 Si 0.797 3.203 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.186 1.186 14 C 0.259 3.741 15 O -0.510 6.510 16 C -0.076 4.076 17 H 0.117 0.883 18 C -0.177 4.177 19 C -0.044 4.044 20 C -0.146 4.146 21 C -0.089 4.089 22 C -0.162 4.162 23 C 0.354 3.646 24 N -0.393 5.393 25 O -0.469 6.469 26 C -0.098 4.098 27 C -0.117 4.117 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.160 0.840 42 H 0.154 0.846 43 H 0.246 0.754 44 H 0.248 0.752 45 H 0.175 0.825 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.685 5.245 8.110 10.025 hybrid contribution 0.445 -0.398 -0.694 0.915 sum -2.240 4.847 7.416 9.139 Atomic orbital electron populations 1.21713 0.94222 1.02324 1.01736 1.21405 0.97046 0.95233 1.01678 1.21781 0.95596 0.97704 1.00266 1.21253 0.92833 0.84859 1.01160 1.43623 1.55546 1.12048 1.05465 1.19636 1.37532 0.98134 0.92418 0.88487 1.26085 0.93474 0.96341 1.03516 1.70048 1.30395 1.17561 1.34969 0.85240 0.79198 0.77899 0.77949 1.19652 1.21121 1.18556 1.20845 0.79707 0.90089 0.83429 1.90487 1.57256 1.71266 1.32015 1.20042 0.99241 0.92355 0.95939 0.88316 1.21520 0.91560 1.02517 1.02105 1.19956 0.95314 0.94473 0.94646 1.21186 0.97722 0.96445 0.99197 1.21268 0.97842 0.98754 0.91064 1.19923 1.02538 1.00232 0.93548 1.18331 0.79492 0.81726 0.85019 1.43560 1.49336 1.38874 1.07572 1.90768 1.37005 1.30956 1.88217 1.21454 0.95410 0.93868 0.99110 1.21014 1.00342 0.98410 0.91971 0.91103 0.93105 0.92541 0.91995 0.92544 0.94408 0.92665 0.89717 0.95286 0.92060 0.90015 0.93443 0.92249 0.84000 0.84573 0.75370 0.75184 0.82506 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.04 16 2 C -0.12 -3.77 5.93 30.60 0.18 -3.59 16 3 C -0.11 -4.62 5.50 30.59 0.17 -4.45 16 4 C 0.12 5.82 4.92 86.38 0.43 6.25 16 5 N -0.45 -21.82 2.52 -635.54 -1.60 -23.42 16 6 C -0.35 -16.63 7.71 84.04 0.65 -15.98 16 7 H 0.10 4.33 6.55 -2.92 -0.02 4.32 16 8 C 0.01 0.43 4.95 84.93 0.42 0.85 16 9 N -0.89 -45.78 11.51 21.66 0.25 -45.53 16 10 Si 0.97 37.65 29.59 68.60 2.03 39.68 16 11 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 12 H -0.29 -11.14 7.11 99.48 0.71 -10.44 16 13 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 14 C 0.47 21.85 6.71 87.66 0.59 22.44 16 15 O -0.62 -31.45 14.20 -3.06 -0.04 -31.50 16 16 C -0.05 -2.05 2.19 -12.29 -0.03 -2.08 16 17 H 0.10 3.56 6.41 -2.39 -0.02 3.55 16 18 C -0.12 -4.14 8.88 71.98 0.64 -3.50 16 19 C -0.04 -1.45 4.63 -19.81 -0.09 -1.54 16 20 C -0.13 -3.80 9.65 22.23 0.21 -3.58 16 21 C -0.07 -2.02 9.60 22.53 0.22 -1.81 16 22 C -0.16 -4.32 5.87 -20.09 -0.12 -4.43 16 23 C 0.57 14.55 8.05 86.79 0.70 15.25 16 24 N -0.83 -12.83 8.82 -175.60 -1.55 -14.38 16 25 O -0.59 -19.49 17.18 -3.88 -0.07 -19.55 16 26 C -0.08 -2.03 9.54 22.52 0.21 -1.81 16 27 C -0.10 -3.17 7.86 22.23 0.17 -3.00 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.08 4.27 5.63 -2.39 -0.01 4.26 16 36 H 0.03 1.46 7.52 -2.39 -0.02 1.45 16 37 H 0.27 13.13 8.31 -92.70 -0.77 12.36 16 38 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.05 1.65 7.43 -2.38 -0.02 1.63 16 40 H 0.06 2.32 7.24 -2.39 -0.02 2.30 16 41 H 0.14 3.68 7.94 -2.91 -0.02 3.65 16 42 H 0.14 3.72 7.65 -2.91 -0.02 3.70 16 43 H 0.41 4.92 8.93 -92.71 -0.83 4.09 16 44 H 0.42 4.18 6.86 -92.71 -0.64 3.55 16 45 H 0.16 2.64 6.41 -2.91 -0.02 2.62 16 46 H 0.12 4.11 6.95 -2.91 -0.02 4.09 16 Total: -1.00 -65.69 376.01 3.63 -62.06 By element: Atomic # 1 Polarization: 37.12 SS G_CDS: -0.45 Total: 36.67 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 5.07 Total: -4.02 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -2.90 Total: -83.34 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -0.11 Total: -51.05 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -65.69 3.63 -62.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182783786.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.283 kcal (2) G-P(sol) polarization free energy of solvation -65.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds