Wall clock time and date at job start Tue Mar 31 2020 12:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47386 * 2 1 4 4 C 1.52996 * 109.47509 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47296 * 180.02562 * 4 3 2 6 6 C 1.37104 * 119.99381 * 269.99416 * 5 4 3 7 7 H 1.07995 * 119.99826 * 55.02294 * 6 5 4 8 8 C 1.38952 * 120.00003 * 235.01396 * 6 5 4 9 9 N 1.31409 * 120.00018 * 202.00510 * 8 6 5 10 10 Si 1.86798 * 119.99778 * 22.00173 * 8 6 5 11 11 H 1.48502 * 109.46902 * 93.18970 * 10 8 6 12 12 H 1.48497 * 109.47327 * 213.18541 * 10 8 6 13 13 H 1.48494 * 109.47380 * 333.18976 * 10 8 6 14 14 C 1.34778 * 120.00484 * 89.99662 * 5 4 3 15 15 O 1.21296 * 119.99382 * 355.38802 * 14 5 4 16 16 C 1.50697 * 120.00002 * 175.38319 * 14 5 4 17 17 H 1.08993 * 109.47518 * 313.86366 * 16 14 5 18 18 C 1.53002 * 109.46915 * 73.86473 * 16 14 5 19 19 C 1.50699 * 109.47131 * 193.85749 * 16 14 5 20 20 C 1.38361 * 119.85798 * 293.37201 * 19 16 14 21 21 C 1.37958 * 120.14822 * 179.72207 * 20 19 16 22 22 C 1.39578 * 119.84790 * 0.54347 * 21 20 19 23 23 C 1.47839 * 120.14264 * 179.70321 * 22 21 20 24 24 N 1.34777 * 120.00135 * 0.02754 * 23 22 21 25 25 O 1.21559 * 120.00275 * 180.02562 * 23 22 21 26 26 C 1.39580 * 119.71420 * 359.73043 * 22 21 20 27 27 C 1.37955 * 119.85216 * 359.97438 * 26 22 21 28 28 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46803 * 299.99623 * 1 2 3 30 30 H 1.08997 * 109.47460 * 59.99607 * 1 2 3 31 31 H 1.09006 * 109.46803 * 240.00377 * 2 1 3 32 32 H 1.08997 * 109.47460 * 120.00393 * 2 1 3 33 33 H 1.09000 * 109.46530 * 60.00107 * 3 2 1 34 34 H 1.08997 * 109.47142 * 300.00588 * 3 2 1 35 35 H 1.08999 * 109.47059 * 59.99703 * 4 3 2 36 36 H 1.09010 * 109.46618 * 300.00279 * 4 3 2 37 37 H 0.96997 * 119.99731 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.47698 * 55.18417 * 18 16 14 39 39 H 1.08992 * 109.47163 * 175.18830 * 18 16 14 40 40 H 1.09000 * 109.46823 * 295.18718 * 18 16 14 41 41 H 1.08004 * 119.92250 * 359.97438 * 20 19 16 42 42 H 1.07991 * 120.07504 * 180.29419 * 21 20 19 43 43 H 0.97003 * 119.99886 * 359.97438 * 24 23 22 44 44 H 0.97003 * 120.00529 * 180.02562 * 24 23 22 45 45 H 1.07997 * 120.07073 * 179.97438 * 26 22 21 46 46 H 1.07997 * 119.92784 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2864 3.4705 -1.1872 7 1 3.4989 3.5431 -1.9225 8 6 5.5308 4.0329 -1.4440 9 7 5.6468 4.9937 -2.3329 10 14 7.0389 3.4230 -0.5257 11 1 7.7064 2.3609 -1.3205 12 1 7.9814 4.5514 -0.3172 13 1 6.6277 2.8718 0.7904 14 6 4.2835 3.4584 1.1674 15 8 4.0030 2.9170 2.2159 16 6 4.8836 4.8407 1.1700 17 1 5.7338 4.8691 0.4885 18 6 3.8315 5.8543 0.7153 19 6 5.3444 5.1857 2.5627 20 6 4.4155 5.3482 3.5751 21 6 4.8310 5.6584 4.8535 22 6 6.1913 5.8195 5.1219 23 6 6.6433 6.1584 6.4881 24 7 5.7414 6.3119 7.4778 25 8 7.8286 6.2986 6.7189 26 6 7.1228 5.6598 4.0948 27 6 6.6943 5.3436 2.8222 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9284 0.8892 37 1 6.5156 5.3860 -2.5125 38 1 2.9462 5.7665 1.3451 39 1 4.2381 6.8621 0.7985 40 1 3.5607 5.6563 -0.3218 41 1 3.3629 5.2279 3.3650 42 1 4.1053 5.7803 5.6439 43 1 4.7956 6.2004 7.2935 44 1 6.0379 6.5347 8.3741 45 1 8.1766 5.7835 4.2959 46 1 7.4140 5.2193 2.0266 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182783853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:38 Heat of formation + Delta-G solvation = -55.122382 kcal Electronic energy + Delta-G solvation = -27353.305578 eV Core-core repulsion = 23628.569661 eV Total energy + Delta-G solvation = -3724.735917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.18810 -39.35585 -37.89966 -35.50830 -34.42555 -33.95887 -33.19156 -31.96614 -30.70800 -29.45193 -28.35455 -24.85372 -24.64975 -23.61079 -22.47498 -21.83718 -20.71767 -20.29419 -19.14447 -18.15375 -17.49178 -16.73462 -15.95043 -15.43043 -15.03049 -14.83601 -14.72128 -14.69773 -14.64182 -14.03997 -13.89060 -13.57191 -13.26066 -13.10032 -13.03987 -12.76988 -12.42775 -12.26841 -12.07726 -11.81937 -11.47157 -11.37747 -11.07142 -11.04444 -10.82359 -10.78037 -10.66644 -10.61042 -10.32836 -10.06202 -10.03310 -9.81114 -9.80794 -9.07193 -8.82998 -8.63041 -8.40379 -7.57947 -6.59338 -4.33311 1.02776 1.64017 2.96001 2.98983 3.12112 3.22072 3.47226 3.68150 3.98737 4.04965 4.42871 4.77366 4.83470 4.94250 5.15335 5.19030 5.28547 5.31353 5.46109 5.56757 5.67747 5.75365 5.84546 5.89534 5.94282 6.06069 6.09958 6.15664 6.18236 6.23794 6.28283 6.38497 6.41586 6.45576 6.48097 6.52936 6.58361 6.68158 6.75694 6.88198 6.95186 7.08254 7.13718 7.26037 7.61264 7.72135 8.20037 8.38873 8.88585 9.20057 9.65207 10.49084 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.004389 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.478524 B = 6377.663152 C = 7765.361723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.126 4.126 4 C 0.111 3.889 5 N -0.472 5.472 6 C -0.353 4.353 7 H 0.099 0.901 8 C 0.081 3.919 9 N -0.849 5.849 10 Si 0.843 3.157 11 H -0.276 1.276 12 H -0.274 1.274 13 H -0.256 1.256 14 C 0.507 3.493 15 O -0.585 6.585 16 C -0.068 4.068 17 H 0.096 0.904 18 C -0.127 4.127 19 C -0.019 4.019 20 C -0.090 4.090 21 C -0.088 4.088 22 C -0.157 4.157 23 C 0.569 3.431 24 N -0.854 5.854 25 O -0.548 6.548 26 C -0.059 4.059 27 C -0.130 4.130 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.277 0.723 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.130 0.870 42 H 0.122 0.878 43 H 0.401 0.599 44 H 0.401 0.599 45 H 0.132 0.868 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.133 0.396 9.222 10.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.165 4.165 4 C -0.012 4.012 5 N -0.193 5.193 6 C -0.480 4.480 7 H 0.116 0.884 8 C -0.128 4.128 9 N -0.483 5.483 10 Si 0.668 3.332 11 H -0.202 1.202 12 H -0.200 1.200 13 H -0.180 1.180 14 C 0.296 3.704 15 O -0.468 6.468 16 C -0.089 4.089 17 H 0.114 0.886 18 C -0.185 4.185 19 C -0.020 4.020 20 C -0.108 4.108 21 C -0.107 4.107 22 C -0.160 4.160 23 C 0.356 3.644 24 N -0.418 5.418 25 O -0.426 6.426 26 C -0.078 4.078 27 C -0.148 4.148 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.115 0.885 41 H 0.148 0.852 42 H 0.140 0.860 43 H 0.231 0.769 44 H 0.232 0.768 45 H 0.150 0.850 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.375 0.309 9.566 10.523 hybrid contribution 0.669 -0.320 0.406 0.846 sum -3.706 -0.011 9.972 10.638 Atomic orbital electron populations 1.21750 0.96357 1.00851 1.01675 1.21468 0.95398 0.97530 1.01579 1.21866 0.96690 0.95773 1.02171 1.21499 0.93360 0.85217 1.01101 1.43584 1.60149 1.10252 1.05267 1.18854 0.98325 1.34925 0.95866 0.88357 1.25567 0.97714 0.94417 0.95051 1.69736 1.25644 1.20408 1.32522 0.87418 0.83857 0.80050 0.81925 1.20225 1.19992 1.17967 1.20246 0.79629 0.86678 0.83889 1.90548 1.56042 1.68216 1.32014 1.20318 1.00999 0.95171 0.92441 0.88625 1.21619 0.96332 0.96289 1.04242 1.20003 0.93064 0.93409 0.95493 1.20892 1.00176 0.98004 0.91769 1.21154 0.93993 0.98521 0.97002 1.19701 0.94348 1.08685 0.93290 1.18365 0.85459 0.75404 0.85157 1.43754 1.10680 1.74917 1.12437 1.90784 1.16745 1.51299 1.83808 1.21108 0.99595 0.95598 0.91476 1.21101 0.95501 1.01367 0.96854 0.93322 0.92986 0.92868 0.92230 0.92355 0.92157 0.91846 0.91296 0.92218 0.91282 0.93441 0.92990 0.88481 0.85248 0.86034 0.76912 0.76794 0.84998 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.16 0.37 -1.42 16 2 C -0.12 -1.69 5.93 -26.73 -0.16 -1.85 16 3 C -0.13 -2.17 5.54 -26.73 -0.15 -2.32 16 4 C 0.11 2.21 5.34 -4.05 -0.02 2.19 16 5 N -0.47 -10.69 1.87 -114.81 -0.21 -10.90 16 6 C -0.35 -8.51 7.72 -14.93 -0.12 -8.62 16 7 H 0.10 2.52 8.06 -52.49 -0.42 2.10 16 8 C 0.08 1.99 3.92 -17.47 -0.07 1.92 16 9 N -0.85 -21.53 13.96 55.50 0.77 -20.76 16 10 Si 0.84 19.46 24.18 -169.99 -4.11 15.35 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.26 -6.13 5.86 56.52 0.33 -5.80 16 14 C 0.51 11.60 4.96 -10.99 -0.05 11.55 16 15 O -0.58 -14.11 14.85 5.54 0.08 -14.03 16 16 C -0.07 -1.44 1.52 -92.92 -0.14 -1.58 16 17 H 0.10 2.15 2.49 -51.93 -0.13 2.02 16 18 C -0.13 -2.43 8.59 37.16 0.32 -2.11 16 19 C -0.02 -0.36 4.46 -104.53 -0.47 -0.83 16 20 C -0.09 -1.52 8.02 -39.64 -0.32 -1.84 16 21 C -0.09 -1.24 9.54 -39.18 -0.37 -1.61 16 22 C -0.16 -2.42 5.87 -104.97 -0.62 -3.03 16 23 C 0.57 8.21 8.05 -12.33 -0.10 8.11 16 24 N -0.85 -8.08 8.82 30.53 0.27 -7.81 16 25 O -0.55 -9.80 17.18 5.31 0.09 -9.71 16 26 C -0.06 -0.99 9.60 -39.18 -0.38 -1.36 16 27 C -0.13 -2.39 9.65 -39.64 -0.38 -2.77 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 36 H 0.06 1.21 7.49 -51.92 -0.39 0.83 16 37 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 38 H 0.05 0.82 7.22 -51.93 -0.38 0.44 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 2.06 6.47 -51.93 -0.34 1.72 16 41 H 0.13 2.10 7.22 -52.48 -0.38 1.72 16 42 H 0.12 1.21 6.40 -52.49 -0.34 0.87 16 43 H 0.40 2.77 6.86 -40.82 -0.28 2.49 16 44 H 0.40 3.06 8.93 -40.82 -0.36 2.70 16 45 H 0.13 2.09 7.65 -52.49 -0.40 1.69 16 46 H 0.12 2.23 7.19 -52.49 -0.38 1.85 16 LS Contribution 367.04 15.07 5.53 5.53 Total: -1.00 -29.74 367.04 -7.02 -36.76 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -6.80 Total: 11.15 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -2.65 Total: -5.58 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.83 Total: -39.48 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.17 Total: -23.74 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.11 Total: 15.35 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.74 -7.02 -36.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182783853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.362 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds