Wall clock time and date at job start Tue Mar 31 2020 12:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47139 * 2 1 4 4 C 1.53000 * 109.47139 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47434 * 180.02562 * 4 3 2 6 6 C 1.36911 * 119.99840 * 270.00266 * 5 4 3 7 7 H 1.07996 * 119.99514 * 142.71623 * 6 5 4 8 8 C 1.39022 * 120.00077 * 322.71392 * 6 5 4 9 9 N 1.31378 * 120.00013 * 159.10239 * 8 6 5 10 10 Si 1.86802 * 119.99782 * 339.10490 * 8 6 5 11 11 H 1.48495 * 109.47350 * 95.66634 * 10 8 6 12 12 H 1.48511 * 109.46627 * 215.66278 * 10 8 6 13 13 H 1.48498 * 109.47410 * 335.66060 * 10 8 6 14 14 C 1.34769 * 120.00284 * 90.00057 * 5 4 3 15 15 O 1.21632 * 119.99633 * 8.19828 * 14 5 4 16 16 C 1.47420 * 120.00498 * 188.19710 * 14 5 4 17 17 C 1.40043 * 120.59766 * 324.77836 * 16 14 5 18 18 C 1.38331 * 118.33921 * 180.02562 * 17 16 14 19 19 C 1.38364 * 119.46623 * 0.02562 * 18 17 16 20 20 N 1.31891 * 121.19524 * 359.73736 * 19 18 17 21 21 C 1.32221 * 121.81062 * 0.53516 * 20 19 18 22 22 O 1.35426 * 119.80647 * 179.74806 * 21 20 19 23 23 C 1.42905 * 117.00081 * 359.72134 * 22 21 20 24 24 C 1.52995 * 109.47359 * 179.97438 * 23 22 21 25 25 C 1.52994 * 117.50418 * 243.75118 * 24 23 22 26 26 C 1.53000 * 117.49996 * 175.08884 * 24 23 22 27 27 H 1.09002 * 109.47104 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46878 * 299.99953 * 1 2 3 29 29 H 1.09002 * 109.47145 * 59.99260 * 1 2 3 30 30 H 1.09009 * 109.46907 * 240.00590 * 2 1 3 31 31 H 1.08994 * 109.47371 * 120.00558 * 2 1 3 32 32 H 1.09003 * 109.46860 * 60.00910 * 3 2 1 33 33 H 1.08994 * 109.47445 * 300.00513 * 3 2 1 34 34 H 1.09007 * 109.46878 * 60.00047 * 4 3 2 35 35 H 1.09002 * 109.47145 * 300.00739 * 4 3 2 36 36 H 0.96999 * 120.00363 * 180.02562 * 9 8 6 37 37 H 1.07995 * 120.83146 * 359.97438 * 17 16 14 38 38 H 1.08005 * 120.26578 * 180.02562 * 18 17 16 39 39 H 1.07999 * 119.40070 * 180.02562 * 19 18 17 40 40 H 1.08992 * 109.47352 * 300.00719 * 23 22 21 41 41 H 1.09005 * 109.46363 * 60.00001 * 23 22 21 42 42 H 1.09005 * 115.54418 * 29.42115 * 24 23 22 43 43 H 1.09001 * 117.50078 * 0.02562 * 25 24 23 44 44 H 1.09006 * 117.50134 * 145.01910 * 25 24 23 45 45 H 1.08997 * 117.49697 * 214.97920 * 26 24 23 46 46 H 1.08988 * 117.49899 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2861 3.4697 -1.1854 7 1 4.0567 4.5208 -1.2802 8 6 4.8125 2.7728 -2.2670 9 7 4.6575 3.2373 -3.4862 10 14 5.7402 1.1758 -1.9869 11 1 4.8159 0.0279 -2.1691 12 1 6.8550 1.0733 -2.9627 13 1 6.2873 1.1566 -0.6065 14 6 4.2836 3.4583 1.1674 15 8 4.2260 2.8430 2.2150 16 6 4.5997 4.8982 1.1747 17 6 5.3618 5.4659 0.1461 18 6 5.6311 6.8217 0.1999 19 6 5.1457 7.5706 1.2572 20 7 4.4258 7.0163 2.2132 21 6 4.1436 5.7245 2.2133 22 8 3.4050 5.1969 3.2184 23 6 2.9717 6.0924 4.2443 24 6 2.1565 5.3208 5.2839 25 6 0.6830 5.6983 5.4484 26 6 1.6971 6.0826 6.5287 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9329 0.9288 -0.8909 35 1 3.9337 0.9284 0.8891 36 1 5.0244 2.7509 -4.2409 37 1 5.7308 4.8602 -0.6684 38 1 6.2156 7.2918 -0.5772 39 1 5.3562 8.6291 1.2979 40 1 3.8405 6.5426 4.7244 41 1 2.3528 6.8751 3.8056 42 1 2.4239 4.2712 5.4063 43 1 0.2942 6.4961 4.8157 44 1 -0.0191 4.8971 5.6794 45 1 1.6617 5.5341 7.4699 46 1 1.9752 7.1335 6.6068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197663509.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:59 Heat of formation + Delta-G solvation = -3.244407 kcal Electronic energy + Delta-G solvation = -27390.511688 eV Core-core repulsion = 23668.025369 eV Total energy + Delta-G solvation = -3722.486319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.34026 -38.66580 -37.91889 -36.52651 -35.49911 -34.12984 -32.06600 -31.92509 -30.30184 -28.55361 -27.19810 -25.21491 -24.15357 -22.99436 -22.47855 -22.21525 -20.73837 -20.57899 -19.31479 -18.17833 -17.47703 -16.58479 -16.24223 -15.79205 -15.34042 -14.98848 -14.85613 -14.67849 -14.40357 -13.97409 -13.94149 -13.28811 -13.12186 -12.95966 -12.82050 -12.61818 -12.50915 -12.25399 -12.01113 -11.65633 -11.61427 -11.39403 -11.25627 -11.11092 -11.03002 -10.69101 -10.61054 -10.53420 -10.39336 -10.07979 -9.91411 -9.77036 -9.40737 -9.23123 -9.17053 -8.56494 -7.99213 -7.79060 -6.57289 -4.14783 1.39501 1.84735 3.00377 3.17107 3.25505 3.26635 3.70637 3.81171 4.04968 4.19934 4.43185 4.65129 4.75881 4.85027 4.90676 4.99113 5.34803 5.35854 5.37925 5.43353 5.52399 5.52752 5.55689 5.63366 5.69571 5.72664 5.80030 5.81117 5.91146 6.02387 6.11801 6.13350 6.16602 6.23375 6.24034 6.25748 6.40850 6.50219 6.57857 6.75109 6.79021 6.91969 7.04248 7.30492 7.72303 7.96231 8.15631 8.23607 8.85252 9.28497 9.63277 10.51068 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010694 B = 0.005136 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.643625 B = 5450.831718 C = 7421.578304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.126 4.126 4 C 0.105 3.895 5 N -0.459 5.459 6 C -0.353 4.353 7 H 0.111 0.889 8 C 0.069 3.931 9 N -0.854 5.854 10 Si 0.875 3.125 11 H -0.272 1.272 12 H -0.288 1.288 13 H -0.260 1.260 14 C 0.531 3.469 15 O -0.576 6.576 16 C -0.171 4.171 17 C 0.005 3.995 18 C -0.228 4.228 19 C 0.139 3.861 20 N -0.557 5.557 21 C 0.351 3.649 22 O -0.276 6.276 23 C 0.102 3.898 24 C -0.153 4.153 25 C -0.177 4.177 26 C -0.171 4.171 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.277 0.723 37 H 0.179 0.821 38 H 0.135 0.865 39 H 0.153 0.847 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.118 0.882 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 3.976 8.791 10.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.164 4.164 4 C -0.018 4.018 5 N -0.180 5.180 6 C -0.480 4.480 7 H 0.128 0.872 8 C -0.140 4.140 9 N -0.489 5.489 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.215 1.215 13 H -0.184 1.184 14 C 0.321 3.679 15 O -0.460 6.460 16 C -0.176 4.176 17 C -0.020 4.020 18 C -0.249 4.249 19 C -0.017 4.017 20 N -0.282 5.282 21 C 0.171 3.829 22 O -0.182 6.182 23 C 0.026 3.974 24 C -0.172 4.172 25 C -0.214 4.214 26 C -0.208 4.208 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.196 0.804 38 H 0.153 0.847 39 H 0.170 0.830 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.136 0.864 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.739 3.859 9.828 11.201 hybrid contribution 0.725 -0.961 -0.917 1.513 sum -3.014 2.898 8.912 9.844 Atomic orbital electron populations 1.21739 0.96153 1.00859 1.01764 1.21477 0.95606 0.97423 1.01598 1.21858 0.95944 0.96015 1.02633 1.21621 0.93995 0.85006 1.01202 1.43523 1.57183 1.11785 1.05465 1.19245 1.43723 0.97749 0.87281 0.87183 1.25285 0.95993 0.98117 0.94561 1.69744 1.40742 1.40217 0.98150 0.86957 0.80063 0.83410 0.79331 1.19931 1.21454 1.18358 1.17706 0.80102 0.86184 0.83955 1.90664 1.56051 1.67258 1.32013 1.19983 1.05963 0.95656 0.96048 1.22695 0.89511 0.94620 0.95223 1.21975 1.06226 0.95371 1.01291 1.22383 0.91154 0.99502 0.88695 1.67301 1.20004 1.10954 1.29953 1.19776 0.88629 0.87656 0.86807 1.86405 1.64375 1.35874 1.31530 1.22040 0.97695 0.90955 0.86724 1.22165 0.96375 1.01223 0.97401 1.23079 0.92320 1.03571 1.02436 1.22961 1.03753 1.00907 0.93225 0.93279 0.92911 0.92782 0.92289 0.92252 0.92039 0.91168 0.91858 0.91048 0.91297 0.80424 0.84708 0.83013 0.91557 0.91911 0.86439 0.88675 0.88597 0.88429 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.98 5.93 -26.73 -0.16 -2.13 16 3 C -0.13 -2.47 5.54 -26.73 -0.15 -2.62 16 4 C 0.10 2.32 4.26 -4.04 -0.02 2.30 16 5 N -0.46 -11.06 2.18 -116.03 -0.25 -11.32 16 6 C -0.35 -8.74 6.99 -14.99 -0.10 -8.85 16 7 H 0.11 2.84 5.92 -52.49 -0.31 2.53 16 8 C 0.07 1.71 5.33 -17.45 -0.09 1.62 16 9 N -0.85 -22.18 13.95 55.50 0.77 -21.41 16 10 Si 0.87 19.79 24.91 -169.99 -4.24 15.56 16 11 H -0.27 -5.96 6.70 56.52 0.38 -5.58 16 12 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 14 C 0.53 13.01 7.23 -12.53 -0.09 12.92 16 15 O -0.58 -15.14 15.52 -12.27 -0.19 -15.33 16 16 C -0.17 -3.77 5.53 -104.69 -0.58 -4.35 16 17 C 0.00 0.09 7.76 -38.87 -0.30 -0.21 16 18 C -0.23 -3.67 10.09 -39.50 -0.40 -4.07 16 19 C 0.14 2.13 11.17 -17.48 -0.20 1.94 16 20 N -0.56 -10.05 9.21 -12.96 -0.12 -10.17 16 21 C 0.35 7.25 7.48 -16.59 -0.12 7.13 16 22 O -0.28 -5.65 8.78 -35.49 -0.31 -5.96 16 23 C 0.10 1.60 5.59 37.15 0.21 1.81 16 24 C -0.15 -2.08 6.05 -90.63 -0.55 -2.63 16 25 C -0.18 -2.00 10.18 -26.70 -0.27 -2.27 16 26 C -0.17 -1.76 10.26 -26.69 -0.27 -2.04 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.06 1.42 3.12 -51.93 -0.16 1.26 16 35 H 0.07 1.59 7.32 -51.93 -0.38 1.21 16 36 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 37 H 0.18 3.73 5.57 -52.49 -0.29 3.44 16 38 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 39 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 41 H 0.06 0.95 7.83 -51.93 -0.41 0.54 16 42 H 0.12 1.74 8.14 -51.93 -0.42 1.32 16 43 H 0.09 1.04 8.03 -51.93 -0.42 0.62 16 44 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.09 0.88 8.14 -51.94 -0.42 0.46 16 LS Contribution 374.66 15.07 5.65 5.65 Total: -1.00 -29.29 374.66 -8.46 -37.76 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.04 Total: 8.33 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.73 Total: -3.11 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.40 Total: -42.90 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.50 Total: -21.28 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.24 Total: 15.56 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.29 -8.46 -37.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197663509.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.512 kcal (2) G-P(sol) polarization free energy of solvation -29.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds