Wall clock time and date at job start Tue Mar 31 2020 13:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35895 * 116.99735 * 2 1 4 4 C 1.38752 * 120.06035 * 359.71503 * 3 2 1 5 5 C 1.38118 * 119.94851 * 179.79534 * 4 3 2 6 6 C 1.38293 * 120.05217 * 0.48962 * 5 4 3 7 7 C 1.38235 * 120.11126 * 359.74437 * 6 5 4 8 8 C 1.38168 * 120.05897 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.02764 * 179.97438 * 8 7 6 10 10 H 1.09005 * 109.47051 * 224.24845 * 9 8 7 11 11 C 1.52996 * 109.47225 * 344.25164 * 9 8 7 12 12 N 1.46497 * 109.46739 * 174.99764 * 11 9 8 13 13 C 1.34781 * 119.99867 * 180.02562 * 12 11 9 14 14 O 1.21615 * 120.00132 * 359.97438 * 13 12 11 15 15 C 1.47101 * 120.00264 * 180.02562 * 13 12 11 16 16 C 1.32992 * 120.00215 * 179.97438 * 15 13 12 17 17 C 1.50695 * 120.00003 * 359.97438 * 16 15 13 18 18 C 1.50700 * 120.00074 * 180.02562 * 16 15 13 19 19 N 1.46503 * 109.46958 * 104.25258 * 9 8 7 20 20 C 1.36939 * 119.99980 * 300.01093 * 19 9 8 21 21 H 1.08002 * 119.99830 * 4.93606 * 20 19 9 22 22 C 1.38810 * 119.99794 * 184.93676 * 20 19 9 23 23 N 1.31616 * 120.00155 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99796 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46709 * 90.00213 * 24 22 20 26 26 H 1.48498 * 109.46840 * 210.00200 * 24 22 20 27 27 H 1.48495 * 109.47066 * 330.00403 * 24 22 20 28 28 H 1.08995 * 109.46919 * 60.00851 * 1 2 3 29 29 H 1.09000 * 109.46502 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47452 * 300.00420 * 1 2 3 31 31 H 1.08007 * 120.02356 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.97392 * 180.25087 * 5 4 3 33 33 H 1.08001 * 119.93943 * 179.76471 * 6 5 4 34 34 H 1.08007 * 119.97027 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.47124 * 294.99768 * 11 9 8 36 36 H 1.09001 * 109.47329 * 55.00346 * 11 9 8 37 37 H 0.97001 * 120.00843 * 0.02562 * 12 11 9 38 38 H 1.08003 * 119.99755 * 359.97438 * 15 13 12 39 39 H 1.08996 * 109.47327 * 59.99842 * 17 16 15 40 40 H 1.09000 * 109.47335 * 180.02562 * 17 16 15 41 41 H 1.09010 * 109.47265 * 299.99979 * 17 16 15 42 42 H 1.09000 * 109.47592 * 89.99488 * 18 16 15 43 43 H 1.08998 * 109.47233 * 210.00158 * 18 16 15 44 44 H 1.09002 * 109.46930 * 329.99969 * 18 16 15 45 45 H 0.97003 * 120.00293 * 120.00119 * 19 9 8 46 46 H 0.97002 * 119.99610 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0060 5 6 1.9208 3.6047 -0.0017 6 6 3.3019 3.6758 -0.0017 7 6 4.0559 2.5172 -0.0006 8 6 3.4311 1.2848 -0.0001 9 6 4.2538 0.0222 0.0005 10 1 3.8354 -0.6844 -0.7164 11 6 5.6954 0.3526 -0.3911 12 7 6.5212 -0.8519 -0.2751 13 6 7.8351 -0.7993 -0.5708 14 8 8.3351 0.2480 -0.9344 15 6 8.6642 -2.0088 -0.4549 16 6 9.9606 -1.9570 -0.7472 17 6 10.5801 -0.6592 -1.1976 18 6 10.8098 -3.1963 -0.6289 19 7 4.2354 -0.5720 1.3395 20 6 4.7147 0.1358 2.4093 21 1 5.0321 1.1601 2.2806 22 6 4.7925 -0.4632 3.6591 23 7 4.4052 -1.7112 3.8160 24 14 5.4469 0.5022 5.1184 25 1 4.3231 1.1971 5.7962 26 1 6.1022 -0.4274 6.0731 27 1 6.4355 1.5044 4.6457 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2128 2.3203 -0.0102 32 1 1.3339 4.5114 -0.0022 33 1 3.7922 4.6381 -0.0022 34 1 5.1344 2.5753 -0.0002 35 1 5.7192 0.7117 -1.4200 36 1 6.0843 1.1249 0.2725 37 1 6.1224 -1.6874 0.0145 38 1 8.2201 -2.9390 -0.1324 39 1 10.4555 0.0926 -0.4184 40 1 11.6421 -0.8111 -1.3901 41 1 10.0905 -0.3205 -2.1108 42 1 10.8037 -3.7329 -1.5777 43 1 11.8321 -2.9136 -0.3779 44 1 10.4077 -3.8388 0.1544 45 1 3.8837 -1.4668 1.4683 46 1 4.4599 -2.1298 4.6893 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198509090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:23 Heat of formation + Delta-G solvation = -19.242681 kcal Electronic energy + Delta-G solvation = -27060.322487 eV Core-core repulsion = 23337.142430 eV Total energy + Delta-G solvation = -3723.180056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.90814 -39.19930 -37.23152 -35.99447 -35.00027 -33.25870 -31.96183 -29.89222 -29.50949 -28.43601 -27.63339 -27.09169 -26.26990 -24.26576 -22.63067 -21.62242 -20.57605 -19.81106 -18.33772 -17.76638 -17.15398 -16.50072 -15.75171 -15.52521 -15.21288 -15.03380 -14.89422 -14.49212 -14.02605 -13.97725 -13.91802 -13.59651 -13.39739 -13.09110 -12.84920 -12.66985 -12.33413 -12.14749 -12.12174 -11.76445 -11.60868 -11.57703 -11.52419 -11.37616 -10.90520 -10.85512 -10.73986 -10.49594 -10.43088 -9.95402 -9.67540 -9.13117 -8.95933 -8.94681 -8.39533 -8.20987 -7.67173 -6.99530 -5.76712 -3.05828 1.69013 1.79966 1.92982 3.44137 3.50224 3.51916 3.70924 3.77940 3.93617 4.23204 4.62700 4.96222 5.01899 5.13855 5.18193 5.32603 5.40523 5.40989 5.46104 5.50368 5.57273 5.66614 5.67171 5.72533 5.78250 5.80434 5.86166 5.89087 5.96212 6.05257 6.05796 6.12670 6.30769 6.44123 6.48328 6.67067 6.69393 6.75102 6.78797 6.89233 7.03800 7.19270 7.26014 7.75389 7.86845 8.23952 8.39972 8.86969 9.53538 10.03607 10.40771 11.45144 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010244 B = 0.004426 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.761396 B = 6324.983845 C = 7516.937673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.302 6.302 3 C 0.144 3.856 4 C -0.216 4.216 5 C -0.095 4.095 6 C -0.161 4.161 7 C -0.080 4.080 8 C -0.095 4.095 9 C 0.207 3.793 10 H 0.071 0.929 11 C 0.111 3.889 12 N -0.697 5.697 13 C 0.540 3.460 14 O -0.560 6.560 15 C -0.220 4.220 16 C -0.052 4.052 17 C -0.111 4.111 18 C -0.123 4.123 19 N -0.704 5.704 20 C -0.227 4.227 21 H 0.069 0.931 22 C -0.008 4.008 23 N -0.931 5.931 24 Si 0.898 3.102 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.403 0.597 38 H 0.123 0.877 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.387 0.613 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 1.029 -11.424 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.215 6.215 3 C 0.098 3.902 4 C -0.235 4.235 5 C -0.114 4.114 6 C -0.179 4.179 7 C -0.099 4.099 8 C -0.098 4.098 9 C 0.096 3.904 10 H 0.089 0.911 11 C -0.015 4.015 12 N -0.346 5.346 13 C 0.329 3.671 14 O -0.442 6.442 15 C -0.241 4.241 16 C -0.054 4.054 17 C -0.167 4.167 18 C -0.180 4.180 19 N -0.343 5.343 20 C -0.358 4.358 21 H 0.087 0.913 22 C -0.203 4.203 23 N -0.579 5.579 24 Si 0.730 3.270 25 H -0.219 1.219 26 H -0.219 1.219 27 H -0.207 1.207 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.147 0.853 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.239 0.761 38 H 0.141 0.859 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.222 0.778 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.680 1.637 -11.521 11.656 hybrid contribution -0.489 0.058 1.451 1.533 sum 0.191 1.695 -10.070 10.213 Atomic orbital electron populations 1.22948 0.79590 1.03373 1.00567 1.86150 1.20190 1.26790 1.88369 1.18755 0.91752 0.83882 0.95822 1.21089 0.99351 0.92641 1.10385 1.20742 0.94625 0.96475 0.99556 1.20952 0.93850 0.98148 1.04966 1.21047 1.00147 0.91212 0.97479 1.19937 0.90887 0.96825 1.02182 1.19164 0.90632 0.91094 0.89530 0.91081 1.21876 0.92647 0.87615 0.99392 1.45621 1.08322 1.13813 1.66801 1.18450 0.82211 0.88680 0.77745 1.90711 1.72634 1.32141 1.48723 1.22479 0.94897 0.98513 1.08216 1.22453 0.94056 0.96563 0.92284 1.20976 0.98195 0.94428 1.03077 1.20971 0.99344 0.95196 1.02465 1.42332 1.73451 1.17640 1.00861 1.19089 1.33936 0.95399 0.87425 0.91298 1.24653 1.02045 0.96100 0.97546 1.69650 1.53659 1.11655 1.22938 0.86315 0.78550 0.78965 0.83195 1.21889 1.21875 1.20748 0.93456 0.88720 0.93052 0.86294 0.86758 0.86658 0.85334 0.92859 0.91267 0.76141 0.85872 0.90017 0.93593 0.90225 0.90772 0.91335 0.91220 0.77847 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.30 -5.30 9.81 -19.41 -0.19 -5.49 16 3 C 0.14 2.60 6.66 -39.22 -0.26 2.34 16 4 C -0.22 -3.39 9.04 -39.44 -0.36 -3.75 16 5 C -0.10 -1.42 10.04 -39.61 -0.40 -1.82 16 6 C -0.16 -2.52 10.04 -39.56 -0.40 -2.91 16 7 C -0.08 -1.41 8.80 -39.61 -0.35 -1.76 16 8 C -0.09 -1.78 4.74 -104.47 -0.49 -2.28 16 9 C 0.21 3.99 2.69 -69.08 -0.19 3.80 16 10 H 0.07 1.29 7.98 -51.93 -0.41 0.88 16 11 C 0.11 2.08 3.97 -4.05 -0.02 2.06 16 12 N -0.70 -12.73 5.38 -61.49 -0.33 -13.06 16 13 C 0.54 9.91 7.73 -12.66 -0.10 9.81 16 14 O -0.56 -11.42 13.07 5.26 0.07 -11.36 16 15 C -0.22 -3.35 9.63 -37.81 -0.36 -3.71 16 16 C -0.05 -0.69 6.11 -101.17 -0.62 -1.31 16 17 C -0.11 -1.52 8.33 36.00 0.30 -1.22 16 18 C -0.12 -1.22 9.98 36.01 0.36 -0.86 16 19 N -0.70 -16.28 4.72 -54.55 -0.26 -16.54 16 20 C -0.23 -5.99 8.79 -15.06 -0.13 -6.12 16 21 H 0.07 1.85 7.06 -52.49 -0.37 1.48 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.93 -27.02 13.06 55.49 0.72 -26.30 16 24 Si 0.90 22.64 29.55 -169.99 -5.02 17.62 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 28 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.64 7.67 -51.93 -0.40 0.24 16 31 H 0.12 1.56 6.30 -52.48 -0.33 1.23 16 32 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.13 2.22 5.83 -52.48 -0.31 1.92 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.45 5.89 -51.93 -0.31 1.15 16 37 H 0.40 7.16 8.12 -40.82 -0.33 6.83 16 38 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.08 1.29 7.22 -51.93 -0.37 0.92 16 40 H 0.05 0.50 7.94 -51.93 -0.41 0.09 16 41 H 0.08 1.18 7.22 -51.92 -0.37 0.80 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 44 H 0.07 0.66 8.07 -51.93 -0.42 0.25 16 45 H 0.39 9.62 8.04 -40.82 -0.33 9.29 16 46 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -31.60 378.76 -8.27 -39.87 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -6.85 Total: 16.18 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.12 Total: -6.64 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.14 Total: -55.89 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.12 Total: -16.84 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.60 -8.27 -39.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198509090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.628 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds