Wall clock time and date at job start Tue Mar 31 2020 13:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35895 * 116.99735 * 2 1 4 4 C 1.38752 * 120.06035 * 359.71503 * 3 2 1 5 5 C 1.38118 * 119.94851 * 179.79534 * 4 3 2 6 6 C 1.38293 * 120.05217 * 0.48962 * 5 4 3 7 7 C 1.38235 * 120.11126 * 359.74437 * 6 5 4 8 8 C 1.38168 * 120.05897 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.02764 * 179.97438 * 8 7 6 10 10 H 1.09005 * 109.47051 * 224.24845 * 9 8 7 11 11 C 1.52996 * 109.47225 * 344.25164 * 9 8 7 12 12 N 1.46497 * 109.46739 * 174.99764 * 11 9 8 13 13 C 1.34781 * 119.99867 * 180.02562 * 12 11 9 14 14 O 1.21615 * 120.00132 * 359.97438 * 13 12 11 15 15 C 1.47101 * 120.00264 * 180.02562 * 13 12 11 16 16 C 1.32992 * 120.00215 * 179.97438 * 15 13 12 17 17 C 1.50695 * 120.00003 * 359.97438 * 16 15 13 18 18 C 1.50700 * 120.00074 * 180.02562 * 16 15 13 19 19 N 1.46503 * 109.46958 * 104.25258 * 9 8 7 20 20 C 1.36939 * 119.99980 * 300.01093 * 19 9 8 21 21 H 1.08002 * 119.99830 * 4.93606 * 20 19 9 22 22 C 1.38810 * 119.99794 * 184.93676 * 20 19 9 23 23 N 1.31616 * 120.00155 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99796 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46709 * 90.00213 * 24 22 20 26 26 H 1.48498 * 109.46840 * 210.00200 * 24 22 20 27 27 H 1.48495 * 109.47066 * 330.00403 * 24 22 20 28 28 H 1.08995 * 109.46919 * 60.00851 * 1 2 3 29 29 H 1.09000 * 109.46502 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47452 * 300.00420 * 1 2 3 31 31 H 1.08007 * 120.02356 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.97392 * 180.25087 * 5 4 3 33 33 H 1.08001 * 119.93943 * 179.76471 * 6 5 4 34 34 H 1.08007 * 119.97027 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.47124 * 294.99768 * 11 9 8 36 36 H 1.09001 * 109.47329 * 55.00346 * 11 9 8 37 37 H 0.97001 * 120.00843 * 0.02562 * 12 11 9 38 38 H 1.08003 * 119.99755 * 359.97438 * 15 13 12 39 39 H 1.08996 * 109.47327 * 59.99842 * 17 16 15 40 40 H 1.09000 * 109.47335 * 180.02562 * 17 16 15 41 41 H 1.09010 * 109.47265 * 299.99979 * 17 16 15 42 42 H 1.09000 * 109.47592 * 89.99488 * 18 16 15 43 43 H 1.08998 * 109.47233 * 210.00158 * 18 16 15 44 44 H 1.09002 * 109.46930 * 329.99969 * 18 16 15 45 45 H 0.97003 * 120.00293 * 120.00119 * 19 9 8 46 46 H 0.97002 * 119.99610 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0060 5 6 1.9208 3.6047 -0.0017 6 6 3.3019 3.6758 -0.0017 7 6 4.0559 2.5172 -0.0006 8 6 3.4311 1.2848 -0.0001 9 6 4.2538 0.0222 0.0005 10 1 3.8354 -0.6844 -0.7164 11 6 5.6954 0.3526 -0.3911 12 7 6.5212 -0.8519 -0.2751 13 6 7.8351 -0.7993 -0.5708 14 8 8.3351 0.2480 -0.9344 15 6 8.6642 -2.0088 -0.4549 16 6 9.9606 -1.9570 -0.7472 17 6 10.5801 -0.6592 -1.1976 18 6 10.8098 -3.1963 -0.6289 19 7 4.2354 -0.5720 1.3395 20 6 4.7147 0.1358 2.4093 21 1 5.0321 1.1601 2.2806 22 6 4.7925 -0.4632 3.6591 23 7 4.4052 -1.7112 3.8160 24 14 5.4469 0.5022 5.1184 25 1 4.3231 1.1971 5.7962 26 1 6.1022 -0.4274 6.0731 27 1 6.4355 1.5044 4.6457 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2128 2.3203 -0.0102 32 1 1.3339 4.5114 -0.0022 33 1 3.7922 4.6381 -0.0022 34 1 5.1344 2.5753 -0.0002 35 1 5.7192 0.7117 -1.4200 36 1 6.0843 1.1249 0.2725 37 1 6.1224 -1.6874 0.0145 38 1 8.2201 -2.9390 -0.1324 39 1 10.4555 0.0926 -0.4184 40 1 11.6421 -0.8111 -1.3901 41 1 10.0905 -0.3205 -2.1108 42 1 10.8037 -3.7329 -1.5777 43 1 11.8321 -2.9136 -0.3779 44 1 10.4077 -3.8388 0.1544 45 1 3.8837 -1.4668 1.4683 46 1 4.4599 -2.1298 4.6893 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198509090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:22 Heat of formation + Delta-G solvation = -39.347645 kcal Electronic energy + Delta-G solvation = -27061.194303 eV Core-core repulsion = 23337.142430 eV Total energy + Delta-G solvation = -3724.051873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.22852 -40.59356 -38.56732 -37.40655 -36.24968 -34.97098 -33.65518 -31.44759 -30.85060 -29.76837 -28.61066 -28.24120 -27.63104 -26.06610 -24.13900 -22.89578 -21.90283 -21.34252 -19.60758 -19.35347 -18.72355 -17.82911 -17.18551 -17.04408 -16.45808 -16.30186 -16.26586 -16.12124 -15.62230 -15.38152 -15.17545 -14.92752 -14.69667 -14.46135 -14.24030 -13.96334 -13.55232 -13.40868 -13.25687 -13.15074 -13.07091 -12.87743 -12.74433 -12.65441 -12.61903 -12.37590 -12.24849 -11.88448 -11.83374 -11.73152 -11.58158 -10.95565 -10.52381 -10.19374 -9.72323 -9.64387 -9.08611 -8.83999 -7.88954 -5.15017 0.49677 0.50890 0.64834 1.42152 1.43902 1.50433 2.38092 2.52096 2.56595 2.58720 2.94979 3.43589 3.86515 3.88740 3.97649 4.01222 4.06026 4.24942 4.32290 4.34988 4.38930 4.44635 4.45834 4.59647 4.61556 4.66189 4.72856 4.75720 4.80458 4.84278 4.86722 4.94564 5.06895 5.13769 5.19123 5.21185 5.49287 5.57447 5.58716 5.61108 5.66150 5.71251 5.76504 6.01275 6.31393 6.64730 6.78643 7.40939 7.42047 8.08540 8.37184 9.33321 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010244 B = 0.004426 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.761396 B = 6324.983845 C = 7516.937673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.329 6.329 3 C 0.126 3.874 4 C -0.217 4.217 5 C -0.089 4.089 6 C -0.166 4.166 7 C -0.095 4.095 8 C -0.125 4.125 9 C 0.214 3.786 10 H 0.079 0.921 11 C 0.124 3.876 12 N -0.700 5.700 13 C 0.531 3.469 14 O -0.589 6.589 15 C -0.249 4.249 16 C -0.033 4.033 17 C -0.111 4.111 18 C -0.121 4.121 19 N -0.706 5.706 20 C -0.205 4.205 21 H 0.062 0.938 22 C -0.064 4.064 23 N -0.959 5.959 24 Si 0.946 3.054 25 H -0.293 1.293 26 H -0.296 1.296 27 H -0.281 1.281 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.052 0.948 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.121 0.879 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.405 0.595 38 H 0.139 0.861 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.378 0.622 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.095 1.568 -12.255 12.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.243 6.243 3 C 0.080 3.920 4 C -0.236 4.236 5 C -0.107 4.107 6 C -0.184 4.184 7 C -0.114 4.114 8 C -0.128 4.128 9 C 0.105 3.895 10 H 0.097 0.903 11 C -0.003 4.003 12 N -0.348 5.348 13 C 0.322 3.678 14 O -0.473 6.473 15 C -0.270 4.270 16 C -0.035 4.035 17 C -0.167 4.167 18 C -0.177 4.177 19 N -0.344 5.344 20 C -0.337 4.337 21 H 0.079 0.921 22 C -0.256 4.256 23 N -0.610 5.610 24 Si 0.778 3.222 25 H -0.220 1.220 26 H -0.222 1.222 27 H -0.207 1.207 28 H 0.089 0.911 29 H 0.128 0.872 30 H 0.071 0.929 31 H 0.164 0.836 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.139 0.861 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.241 0.759 38 H 0.156 0.844 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.210 0.790 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.568 2.201 -12.388 12.595 hybrid contribution -0.470 -0.025 1.559 1.629 sum 0.098 2.176 -10.829 11.046 Atomic orbital electron populations 1.23231 0.77302 1.04936 1.01721 1.86103 1.22698 1.27012 1.88443 1.18985 0.91761 0.84971 0.96268 1.21453 1.00748 0.92109 1.09273 1.21203 0.94526 0.97597 0.97393 1.21278 0.94535 0.98391 1.04167 1.21127 1.00123 0.91867 0.98237 1.19881 0.91645 0.96575 1.04743 1.19208 0.90884 0.91808 0.87630 0.90302 1.21673 0.92130 0.87291 0.99164 1.45677 1.08607 1.13603 1.66958 1.19064 0.82245 0.89500 0.76957 1.90690 1.73019 1.33446 1.50122 1.22484 0.95482 0.97788 1.11234 1.22888 0.93737 0.97751 0.89087 1.20947 1.00201 0.94027 1.01534 1.21062 0.99367 0.93445 1.03847 1.42315 1.73238 1.17114 1.01738 1.19177 1.31534 0.94897 0.88088 0.92052 1.25183 1.03881 0.96998 0.99543 1.69760 1.55830 1.12696 1.22759 0.85541 0.77866 0.77810 0.81027 1.22039 1.22246 1.20684 0.91072 0.87160 0.92932 0.83595 0.83104 0.84221 0.86109 0.91962 0.93808 0.75932 0.84354 0.92484 0.90316 0.91613 0.88590 0.89566 0.90645 0.78970 0.94394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.81 113.37 1.11 1.65 16 2 O -0.33 -11.38 9.81 -92.37 -0.91 -12.29 16 3 C 0.13 4.47 6.66 22.51 0.15 4.62 16 4 C -0.22 -6.32 9.04 22.36 0.20 -6.12 16 5 C -0.09 -2.38 10.04 22.25 0.22 -2.16 16 6 C -0.17 -4.89 10.04 22.28 0.22 -4.67 16 7 C -0.09 -3.35 8.80 22.25 0.20 -3.15 16 8 C -0.13 -4.76 4.74 -19.77 -0.09 -4.85 16 9 C 0.21 8.47 2.69 44.24 0.12 8.59 16 10 H 0.08 2.94 7.98 -2.38 -0.02 2.93 16 11 C 0.12 4.81 3.97 86.38 0.34 5.15 16 12 N -0.70 -26.44 5.38 -466.72 -2.51 -28.96 16 13 C 0.53 20.05 7.73 86.57 0.67 20.72 16 14 O -0.59 -24.86 13.07 -4.08 -0.05 -24.92 16 15 C -0.25 -7.53 9.63 23.43 0.23 -7.31 16 16 C -0.03 -0.83 6.11 -17.62 -0.11 -0.94 16 17 C -0.11 -2.96 8.33 71.23 0.59 -2.37 16 18 C -0.12 -2.02 9.98 71.24 0.71 -1.31 16 19 N -0.71 -33.49 4.72 -326.49 -1.54 -35.03 16 20 C -0.20 -10.99 8.79 84.03 0.74 -10.25 16 21 H 0.06 3.37 7.06 -2.91 -0.02 3.34 16 22 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 23 N -0.96 -56.81 13.06 21.65 0.28 -56.52 16 24 Si 0.95 47.24 29.55 68.60 2.03 49.27 16 25 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 26 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 27 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 28 H 0.07 1.32 7.65 -2.39 -0.02 1.31 16 29 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 1.22 7.67 -2.39 -0.02 1.20 16 31 H 0.15 3.35 6.30 -2.91 -0.02 3.33 16 32 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 33 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 34 H 0.12 4.34 5.83 -2.91 -0.02 4.32 16 35 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.04 1.93 5.89 -2.39 -0.01 1.91 16 37 H 0.41 14.89 8.12 -92.71 -0.75 14.14 16 38 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 39 H 0.06 1.83 7.22 -2.39 -0.02 1.81 16 40 H 0.08 1.55 7.94 -2.39 -0.02 1.53 16 41 H 0.07 1.95 7.22 -2.38 -0.02 1.94 16 42 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.09 1.18 8.05 -2.39 -0.02 1.16 16 44 H 0.07 1.23 8.07 -2.39 -0.02 1.21 16 45 H 0.38 19.30 8.04 -92.71 -0.75 18.55 16 46 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -69.68 378.76 2.57 -67.11 By element: Atomic # 1 Polarization: 47.35 SS G_CDS: -0.49 Total: 46.86 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 5.77 Total: -5.53 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -3.77 Total: -120.51 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.96 Total: -37.20 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -69.68 2.57 -67.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198509090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.761 kcal (2) G-P(sol) polarization free energy of solvation -69.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds