Wall clock time and date at job start Tue Mar 31 2020 12:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32989 * 120.00103 * 2 1 4 4 C 1.50706 * 120.00097 * 180.02562 * 3 2 1 5 5 C 1.47097 * 120.00153 * 359.97438 * 3 2 1 6 6 O 1.21613 * 119.99737 * 0.02562 * 5 3 2 7 7 N 1.34780 * 120.00500 * 180.02562 * 5 3 2 8 8 C 1.46496 * 120.00365 * 180.02562 * 7 5 3 9 9 C 1.52999 * 109.47110 * 179.97438 * 8 7 5 10 10 H 1.08996 * 109.46831 * 294.99583 * 9 8 7 11 11 N 1.46496 * 109.46992 * 54.99816 * 9 8 7 12 12 C 1.36939 * 119.99753 * 204.99636 * 11 9 8 13 13 H 1.08000 * 120.00226 * 0.02562 * 12 11 9 14 14 C 1.38812 * 119.99960 * 179.97438 * 12 11 9 15 15 N 1.31622 * 120.00279 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00027 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46884 * 90.00516 * 16 14 12 18 18 H 1.48492 * 109.47202 * 210.00179 * 16 14 12 19 19 H 1.48500 * 109.47428 * 330.00587 * 16 14 12 20 20 C 1.50704 * 109.47077 * 174.99892 * 9 8 7 21 21 C 1.38165 * 120.02484 * 264.72642 * 20 9 8 22 22 C 1.38243 * 120.05499 * 179.77158 * 21 20 9 23 23 C 1.38296 * 120.10985 * 0.50203 * 22 21 20 24 24 C 1.38120 * 120.05456 * 359.74646 * 23 22 21 25 25 C 1.38705 * 120.02722 * 84.99730 * 20 9 8 26 26 O 1.35892 * 120.05965 * 359.97438 * 25 20 9 27 27 C 1.42900 * 117.00290 * 179.97438 * 26 25 20 28 28 H 1.08997 * 109.47440 * 60.00076 * 1 2 3 29 29 H 1.09001 * 109.47288 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47335 * 299.99658 * 1 2 3 31 31 H 1.08003 * 120.00064 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46953 * 269.99561 * 4 3 2 33 33 H 1.09000 * 109.47318 * 29.99159 * 4 3 2 34 34 H 1.09000 * 109.47161 * 149.99789 * 4 3 2 35 35 H 0.97000 * 119.99506 * 359.97438 * 7 5 3 36 36 H 1.08998 * 109.46788 * 299.99848 * 8 7 5 37 37 H 1.09000 * 109.47027 * 59.99559 * 8 7 5 38 38 H 0.97000 * 120.00660 * 25.00448 * 11 9 8 39 39 H 0.96997 * 120.00634 * 179.97438 * 15 14 12 40 40 H 1.08001 * 119.97553 * 0.02562 * 21 20 9 41 41 H 1.07999 * 119.95048 * 180.25387 * 22 21 20 42 42 H 1.07999 * 119.97142 * 179.77208 * 23 22 21 43 43 H 1.08004 * 120.02928 * 180.02562 * 24 23 22 44 44 H 1.08999 * 109.47441 * 179.97438 * 27 26 25 45 45 H 1.08993 * 109.47570 * 300.00494 * 27 26 25 46 46 H 1.08999 * 109.47050 * 60.00647 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6790 1.1517 -0.0006 5 6 1.4365 2.4256 -0.0006 6 8 0.2204 2.4256 -0.0006 7 7 2.1104 3.5929 -0.0011 8 6 1.3779 4.8616 -0.0011 9 6 2.3722 6.0245 -0.0011 10 1 2.9383 6.0184 0.9303 11 7 3.2916 5.8808 -1.1325 12 6 4.5357 6.4507 -1.0803 13 1 4.8392 7.0057 -0.2049 14 6 5.4072 6.3141 -2.1521 15 7 5.0376 5.6372 -3.2187 16 14 7.1046 7.0908 -2.0806 17 1 8.0673 6.1235 -1.4952 18 1 7.5407 7.4543 -3.4527 19 1 7.0551 8.3120 -1.2371 20 6 1.6228 7.3261 -0.1250 21 6 1.4530 7.9108 -1.3652 22 6 0.7616 9.1024 -1.4801 23 6 0.2472 9.7175 -0.3534 24 6 0.4186 9.1396 0.8894 25 6 1.1078 7.9409 1.0067 26 8 1.2777 7.3704 2.2283 27 6 0.7210 8.0597 3.3494 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.0470 -0.9353 -0.0004 32 1 4.0427 1.1516 1.0270 33 1 4.0422 0.2618 -0.5146 34 1 4.0421 2.0418 -0.5144 35 1 3.0804 3.5928 -0.0007 36 1 0.7509 4.9191 -0.8909 37 1 0.7515 4.9195 0.8891 38 1 3.0193 5.3821 -1.9186 39 1 5.6464 5.5421 -3.9678 40 1 1.8573 7.4345 -2.2462 41 1 0.6264 9.5559 -2.4510 42 1 -0.2894 10.6502 -0.4453 43 1 0.0164 9.6201 1.7690 44 1 0.9272 7.4979 4.2604 45 1 1.1673 9.0512 3.4247 46 1 -0.3569 8.1555 3.2184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198647570.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:15 Heat of formation + Delta-G solvation = -21.716937 kcal Electronic energy + Delta-G solvation = -27134.905346 eV Core-core repulsion = 23411.617998 eV Total energy + Delta-G solvation = -3723.287348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.97517 -39.44115 -37.22851 -35.94666 -34.67661 -33.62556 -32.05849 -29.96433 -29.72350 -29.59637 -27.50391 -26.93392 -24.76784 -23.85824 -23.01419 -21.56850 -21.45183 -20.04920 -18.87544 -17.68675 -17.25537 -16.05544 -15.87604 -15.69694 -15.38867 -15.15928 -14.98737 -14.43348 -14.06594 -13.89122 -13.75377 -13.55115 -13.26524 -12.98959 -12.77311 -12.70859 -12.54032 -12.34689 -12.31083 -11.92012 -11.78395 -11.69487 -11.29288 -11.22398 -10.96708 -10.87478 -10.79710 -10.67903 -10.47438 -10.12962 -9.75647 -9.23117 -9.04379 -8.94321 -8.41527 -8.32569 -7.72166 -7.10703 -5.84415 -3.15650 1.62982 1.81790 1.89832 3.38910 3.46122 3.46875 3.57615 3.63332 3.73257 4.25363 4.52493 4.97995 5.05624 5.08212 5.17177 5.23975 5.28128 5.38522 5.48839 5.51570 5.54254 5.57815 5.63939 5.73266 5.77617 5.85182 5.87823 5.98645 5.99260 6.00807 6.09236 6.27270 6.30411 6.35896 6.46522 6.60555 6.63280 6.74620 6.75987 6.93190 6.97905 7.18485 7.34551 7.67724 7.76656 8.07407 8.32264 8.69269 9.45109 9.95744 10.33280 11.36881 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007827 B = 0.005452 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3576.581181 B = 5134.112028 C = 7639.234753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.086 4.086 3 C -0.183 4.183 4 C -0.119 4.119 5 C 0.545 3.455 6 O -0.553 6.553 7 N -0.708 5.708 8 C 0.125 3.875 9 C 0.208 3.792 10 H 0.070 0.930 11 N -0.716 5.716 12 C -0.240 4.240 13 H 0.071 0.929 14 C -0.006 4.006 15 N -0.929 5.929 16 Si 0.904 3.096 17 H -0.290 1.290 18 H -0.292 1.292 19 H -0.282 1.282 20 C -0.114 4.114 21 C -0.044 4.044 22 C -0.164 4.164 23 C -0.095 4.095 24 C -0.219 4.219 25 C 0.122 3.878 26 O -0.313 6.313 27 C 0.030 3.970 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.410 0.590 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.387 0.613 39 H 0.256 0.744 40 H 0.139 0.861 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.094 0.906 45 H 0.050 0.950 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.277 -2.081 9.266 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.105 4.105 3 C -0.186 4.186 4 C -0.176 4.176 5 C 0.334 3.666 6 O -0.434 6.434 7 N -0.360 5.360 8 C 0.000 4.000 9 C 0.097 3.903 10 H 0.088 0.912 11 N -0.357 5.357 12 C -0.371 4.371 13 H 0.089 0.911 14 C -0.202 4.202 15 N -0.576 5.576 16 Si 0.735 3.265 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.208 1.208 20 C -0.119 4.119 21 C -0.062 4.062 22 C -0.182 4.182 23 C -0.113 4.113 24 C -0.238 4.238 25 C 0.077 3.923 26 O -0.227 6.227 27 C -0.066 4.066 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.138 0.862 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.248 0.752 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.221 0.779 39 H 0.066 0.934 40 H 0.157 0.843 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.113 0.887 45 H 0.069 0.931 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.831 -2.150 9.341 13.034 hybrid contribution 1.316 0.819 -0.232 1.567 sum -7.516 -1.332 9.109 11.884 Atomic orbital electron populations 1.20966 0.91975 1.00283 1.04106 1.23514 0.97031 0.96527 0.93467 1.21559 0.96533 0.93320 1.07146 1.20815 0.90833 1.03597 1.02348 1.18378 0.87170 0.84274 0.76815 1.90732 1.13643 1.87827 1.51182 1.45941 1.11381 1.05118 1.73536 1.21507 0.94413 0.82457 1.01606 1.19255 0.89475 0.87966 0.93645 0.91244 1.42483 1.12994 1.63671 1.16519 1.19194 0.90139 1.26845 1.00956 0.91142 1.24701 0.98464 1.00669 0.96398 1.69655 1.36180 1.45324 1.06483 0.86244 0.84628 0.78927 0.76701 1.21708 1.21834 1.20796 1.20416 1.00658 1.00350 0.90443 1.21034 0.93681 0.93924 0.97592 1.21066 1.01675 0.97232 0.98216 1.20781 0.99299 0.99047 0.92205 1.21051 1.06580 0.97550 0.98590 1.18940 0.96282 0.92313 0.84789 1.86086 1.74406 1.48843 1.13327 1.22955 0.98041 0.97699 0.87857 0.90250 0.93571 0.90398 0.86236 0.91287 0.91458 0.90586 0.75230 0.91943 0.91529 0.77877 0.93423 0.84329 0.86587 0.86785 0.86383 0.88742 0.93103 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 8.45 36.00 0.30 -1.21 16 2 C -0.09 -1.08 9.95 -36.13 -0.36 -1.44 16 3 C -0.18 -2.65 6.00 -102.85 -0.62 -3.27 16 4 C -0.12 -1.52 9.61 36.01 0.35 -1.17 16 5 C 0.54 9.55 7.72 -12.67 -0.10 9.45 16 6 O -0.55 -10.80 13.07 5.27 0.07 -10.73 16 7 N -0.71 -12.45 5.33 -61.50 -0.33 -12.78 16 8 C 0.12 2.28 5.21 -4.04 -0.02 2.26 16 9 C 0.21 4.06 2.38 -69.08 -0.16 3.89 16 10 H 0.07 1.42 7.63 -51.93 -0.40 1.03 16 11 N -0.72 -16.26 3.29 -54.55 -0.18 -16.44 16 12 C -0.24 -6.16 9.92 -15.06 -0.15 -6.31 16 13 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 14 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 15 N -0.93 -26.17 13.06 55.49 0.72 -25.44 16 16 Si 0.90 21.51 29.55 -169.99 -5.02 16.49 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C -0.11 -2.16 5.04 -104.47 -0.53 -2.69 16 21 C -0.04 -0.84 9.32 -39.61 -0.37 -1.20 16 22 C -0.16 -2.68 10.04 -39.56 -0.40 -3.07 16 23 C -0.10 -1.40 10.04 -39.60 -0.40 -1.80 16 24 C -0.22 -3.28 9.04 -39.43 -0.36 -3.63 16 25 C 0.12 2.08 6.66 -39.22 -0.26 1.82 16 26 O -0.31 -4.94 9.63 -19.40 -0.19 -5.13 16 27 C 0.03 0.33 9.81 101.05 0.99 1.32 16 28 H 0.08 1.17 7.22 -51.93 -0.37 0.80 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 1.11 7.22 -51.93 -0.37 0.74 16 31 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 34 H 0.08 1.10 6.70 -51.93 -0.35 0.75 16 35 H 0.41 7.23 6.24 -40.82 -0.25 6.98 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.39 9.47 7.80 -40.82 -0.32 9.15 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 40 H 0.14 2.88 7.26 -52.49 -0.38 2.50 16 41 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.12 1.44 6.30 -52.48 -0.33 1.11 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 46 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -29.69 380.73 -8.28 -37.97 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -6.92 Total: 17.64 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -2.17 Total: -7.31 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.22 Total: -54.66 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.12 Total: -15.86 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.69 -8.28 -37.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198647570.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.250 kcal (2) G-P(sol) polarization free energy of solvation -29.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds