Wall clock time and date at job start Tue Mar 31 2020 12:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46812 * 2 1 4 4 C 1.53003 * 109.47109 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47302 * 179.97438 * 4 3 2 6 6 C 1.36546 * 119.99900 * 274.41772 * 5 4 3 7 7 H 1.08002 * 120.00354 * 133.85948 * 6 5 4 8 8 C 1.39283 * 120.00056 * 313.85975 * 6 5 4 9 9 N 1.31210 * 119.99608 * 3.47383 * 8 6 5 10 10 Si 1.86798 * 120.00128 * 183.47954 * 8 6 5 11 11 H 1.48503 * 109.47038 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47516 * 119.99456 * 10 8 6 13 13 H 1.48500 * 109.46748 * 240.00038 * 10 8 6 14 14 C 1.34780 * 119.99904 * 94.41291 * 5 4 3 15 15 O 1.21556 * 119.99882 * 4.42055 * 14 5 4 16 16 C 1.48167 * 119.99681 * 184.42842 * 14 5 4 17 17 C 1.41282 * 120.54795 * 255.75139 * 16 14 5 18 18 C 1.35185 * 119.83482 * 179.78983 * 17 16 14 19 19 N 1.35784 * 121.00872 * 0.49488 * 18 17 16 20 20 C 1.46504 * 119.42665 * 179.75567 * 19 18 17 21 21 C 1.53782 * 113.60938 * 59.72398 * 20 19 18 22 22 C 1.53787 * 87.07886 * 220.01983 * 21 20 19 23 23 C 1.53782 * 87.17055 * 25.39471 * 22 21 20 24 24 C 1.34590 * 121.15518 * 359.48043 * 19 18 17 25 25 O 1.22028 * 119.95082 * 180.26263 * 24 19 18 26 26 C 1.38524 * 120.55785 * 75.77394 * 16 14 5 27 27 H 1.09006 * 109.46739 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47277 * 300.00160 * 1 2 3 29 29 H 1.09004 * 109.47212 * 60.00721 * 1 2 3 30 30 H 1.08994 * 109.47277 * 239.99840 * 2 1 3 31 31 H 1.09004 * 109.47212 * 119.99279 * 2 1 3 32 32 H 1.08994 * 109.47330 * 59.99872 * 3 2 1 33 33 H 1.09004 * 109.47158 * 299.99521 * 3 2 1 34 34 H 1.08994 * 109.47088 * 59.99774 * 4 3 2 35 35 H 1.09004 * 109.46760 * 299.99814 * 4 3 2 36 36 H 0.97001 * 119.99490 * 179.97438 * 9 8 6 37 37 H 1.08001 * 120.08329 * 0.04752 * 17 16 14 38 38 H 1.08003 * 119.49829 * 180.22751 * 18 17 16 39 39 H 1.08998 * 112.85290 * 190.92673 * 20 19 18 40 40 H 1.08997 * 113.61134 * 105.48029 * 21 20 19 41 41 H 1.08999 * 113.69401 * 334.58016 * 21 20 19 42 42 H 1.09004 * 113.61148 * 139.97879 * 22 21 20 43 43 H 1.08991 * 113.62009 * 270.80368 * 22 21 20 44 44 H 1.08998 * 113.61716 * 89.15791 * 23 22 21 45 45 H 1.09005 * 113.61194 * 220.05682 * 23 22 21 46 46 H 1.07997 * 120.49864 * 0.02562 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2004 3.4972 -1.1793 7 1 3.8332 4.5087 -1.2714 8 6 4.8191 2.8796 -2.2637 9 7 5.2040 1.6284 -2.1740 10 14 5.1010 3.8325 -3.8454 11 1 4.5789 5.2142 -3.6906 12 1 6.5554 3.8827 -4.1406 13 1 4.3919 3.1583 -4.9625 14 6 4.3670 3.4300 1.1636 15 8 4.3174 2.8062 2.2057 16 6 4.7668 4.8567 1.1724 17 6 6.1214 5.2218 1.3389 18 6 6.4706 6.5278 1.3404 19 7 5.5361 7.5020 1.1938 20 6 5.9525 8.9065 1.2059 21 6 6.9558 9.2611 0.0957 22 6 7.6822 10.1282 1.1377 23 6 7.0780 9.2087 2.2121 24 6 4.2346 7.1997 1.0319 25 8 3.4139 8.0926 0.8973 26 6 3.8187 5.8547 1.0179 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9564 -0.8901 34 1 3.9337 0.9287 -0.8890 35 1 3.9329 0.9290 0.8909 36 1 5.6345 1.1982 -2.9293 37 1 6.8766 4.4594 1.4606 38 1 7.5082 6.8007 1.4645 39 1 5.1115 9.5968 1.2713 40 1 6.5182 9.8351 -0.7211 41 1 7.5435 8.4113 -0.2513 42 1 8.7687 10.0694 1.0735 43 1 7.3158 11.1536 1.1843 44 1 7.6986 8.3436 2.4458 45 1 6.7389 9.7402 3.1013 46 1 2.7758 5.6049 0.8895 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198753490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:08 Heat of formation + Delta-G solvation = -21.853360 kcal Electronic energy + Delta-G solvation = -27245.873976 eV Core-core repulsion = 23522.580712 eV Total energy + Delta-G solvation = -3723.293264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31433 -38.91518 -38.11641 -36.29447 -35.36117 -33.96673 -32.92425 -31.54221 -29.57900 -28.47055 -26.17165 -25.96837 -24.97257 -23.93050 -23.27222 -21.97603 -20.38290 -19.75809 -19.31101 -17.96964 -17.34082 -16.95548 -16.01381 -15.59007 -15.26895 -15.21191 -14.73007 -14.60298 -14.55746 -14.07222 -13.67753 -13.57400 -13.09447 -12.81622 -12.78698 -12.72730 -12.32969 -12.17974 -12.04798 -11.62734 -11.51719 -11.43966 -11.39454 -11.23157 -11.06903 -10.75529 -10.64299 -10.54845 -10.47716 -10.28533 -10.26714 -9.78944 -9.69274 -9.43237 -9.14564 -8.61395 -7.60699 -7.52032 -6.35239 -4.26894 1.14944 2.25832 2.87587 3.05695 3.16862 3.21594 3.64976 3.88554 4.07364 4.19284 4.36949 4.53729 4.60124 4.66047 4.76740 4.91381 5.14738 5.37866 5.39168 5.48060 5.52665 5.53822 5.59890 5.63163 5.67479 5.70165 5.70965 5.78794 5.87153 6.08654 6.12092 6.28152 6.31993 6.41323 6.44937 6.46098 6.62614 6.75897 6.80030 6.86143 6.87726 7.16547 7.30191 7.41115 7.64388 7.92763 8.33379 8.38388 8.97220 9.33469 9.79071 10.58001 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.004126 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.977920 B = 6784.866881 C = 7755.243682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.125 4.125 4 C 0.095 3.905 5 N -0.421 5.421 6 C -0.340 4.340 7 H 0.090 0.910 8 C 0.052 3.948 9 N -0.865 5.865 10 Si 0.915 3.085 11 H -0.266 1.266 12 H -0.278 1.278 13 H -0.279 1.279 14 C 0.504 3.496 15 O -0.591 6.591 16 C 0.042 3.958 17 C -0.181 4.181 18 C 0.112 3.888 19 N -0.487 5.487 20 C 0.096 3.904 21 C -0.150 4.150 22 C -0.136 4.136 23 C -0.150 4.150 24 C 0.521 3.479 25 O -0.567 6.567 26 C -0.224 4.224 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.128 0.872 35 H 0.053 0.947 36 H 0.271 0.729 37 H 0.146 0.854 38 H 0.159 0.841 39 H 0.132 0.868 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.893 8.694 3.016 10.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.164 4.164 4 C -0.027 4.027 5 N -0.137 5.137 6 C -0.469 4.469 7 H 0.107 0.893 8 C -0.154 4.154 9 N -0.501 5.501 10 Si 0.741 3.259 11 H -0.190 1.190 12 H -0.204 1.204 13 H -0.204 1.204 14 C 0.291 3.709 15 O -0.477 6.477 16 C 0.035 3.965 17 C -0.204 4.204 18 C -0.014 4.014 19 N -0.198 5.198 20 C -0.007 4.007 21 C -0.188 4.188 22 C -0.174 4.174 23 C -0.188 4.188 24 C 0.324 3.676 25 O -0.452 6.452 26 C -0.246 4.246 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.145 0.855 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.163 0.837 38 H 0.176 0.824 39 H 0.149 0.851 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.097 0.903 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.427 8.791 3.276 10.374 hybrid contribution 0.176 0.285 -0.991 1.046 sum 4.603 9.076 2.285 10.430 Atomic orbital electron populations 1.21761 0.96712 1.00635 1.01473 1.21416 0.94885 0.97722 1.01621 1.21869 0.97862 0.95472 1.01150 1.21908 0.91323 0.84722 1.04764 1.43231 1.53887 1.12199 1.04376 1.19486 1.38456 0.99757 0.89156 0.89269 1.25541 0.94410 0.95593 0.99835 1.69478 1.37945 1.10692 1.32031 0.86041 0.78353 0.80187 0.81344 1.19048 1.20403 1.20441 1.18537 0.81064 0.86142 0.85149 1.90666 1.58771 1.65561 1.32692 1.20523 0.93324 0.95162 0.87494 1.20567 0.96162 0.94652 1.09060 1.21532 0.94722 0.88060 0.97044 1.45321 1.08233 1.07360 1.58934 1.23219 0.97535 0.82136 0.97790 1.23449 0.97397 1.00594 0.97405 1.22687 1.00505 0.98476 0.95749 1.23507 0.96910 1.00536 0.97853 1.17024 0.80746 0.90724 0.79076 1.90877 1.50597 1.49390 1.54353 1.22355 1.01218 0.90135 1.10937 0.93454 0.93161 0.93005 0.92069 0.92518 0.93554 0.92068 0.85470 0.92830 0.91839 0.83670 0.82423 0.85067 0.90370 0.89138 0.90470 0.89601 0.89031 0.90300 0.83597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.12 -2.01 5.93 -26.73 -0.16 -2.16 16 3 C -0.12 -2.55 5.52 -26.73 -0.15 -2.70 16 4 C 0.10 2.25 5.14 -4.04 -0.02 2.22 16 5 N -0.42 -10.41 2.51 -115.79 -0.29 -10.70 16 6 C -0.34 -8.46 8.45 -15.06 -0.13 -8.59 16 7 H 0.09 2.23 6.85 -52.49 -0.36 1.87 16 8 C 0.05 1.28 5.41 -17.43 -0.09 1.18 16 9 N -0.86 -21.81 10.75 55.51 0.60 -21.22 16 10 Si 0.91 19.33 29.56 -169.99 -5.02 14.30 16 11 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 13 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 14 C 0.50 12.27 7.10 -12.18 -0.09 12.19 16 15 O -0.59 -15.67 16.60 5.32 0.09 -15.58 16 16 C 0.04 0.88 4.47 -104.56 -0.47 0.41 16 17 C -0.18 -3.11 9.78 -39.51 -0.39 -3.50 16 18 C 0.11 1.54 8.94 -16.89 -0.15 1.39 16 19 N -0.49 -7.50 2.83 -111.66 -0.32 -7.81 16 20 C 0.10 1.15 4.18 -67.02 -0.28 0.87 16 21 C -0.15 -1.47 7.67 -25.91 -0.20 -1.67 16 22 C -0.14 -1.00 8.08 -25.91 -0.21 -1.21 16 23 C -0.15 -1.28 7.49 -25.83 -0.19 -1.48 16 24 C 0.52 10.14 7.41 -15.38 -0.11 10.03 16 25 O -0.57 -12.33 16.51 4.89 0.08 -12.25 16 26 C -0.22 -4.62 8.98 -38.51 -0.35 -4.97 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.13 3.17 5.16 -51.93 -0.27 2.90 16 35 H 0.05 1.30 7.24 -51.93 -0.38 0.92 16 36 H 0.27 6.44 8.30 -40.82 -0.34 6.10 16 37 H 0.15 2.34 8.06 -52.49 -0.42 1.92 16 38 H 0.16 1.49 6.37 -52.48 -0.33 1.15 16 39 H 0.13 1.73 7.17 -51.93 -0.37 1.36 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.88 7.55 -51.93 -0.39 0.49 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.71 6.18 -51.93 -0.32 0.39 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.15 3.06 8.06 -52.49 -0.42 2.64 16 LS Contribution 375.06 15.07 5.65 5.65 Total: -1.00 -30.85 375.06 -8.88 -39.73 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.05 Total: 7.63 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -2.61 Total: 0.25 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: -0.01 Total: -39.73 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: 0.17 Total: -27.83 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.85 -8.88 -39.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198753490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.876 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds