Wall clock time and date at job start Tue Mar 31 2020 12:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46812 * 2 1 4 4 C 1.53003 * 109.47109 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47302 * 179.97438 * 4 3 2 6 6 C 1.36546 * 119.99900 * 274.41772 * 5 4 3 7 7 H 1.08002 * 120.00354 * 133.85948 * 6 5 4 8 8 C 1.39283 * 120.00056 * 313.85975 * 6 5 4 9 9 N 1.31210 * 119.99608 * 3.47383 * 8 6 5 10 10 Si 1.86798 * 120.00128 * 183.47954 * 8 6 5 11 11 H 1.48503 * 109.47038 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47516 * 119.99456 * 10 8 6 13 13 H 1.48500 * 109.46748 * 240.00038 * 10 8 6 14 14 C 1.34780 * 119.99904 * 94.41291 * 5 4 3 15 15 O 1.21556 * 119.99882 * 4.42055 * 14 5 4 16 16 C 1.48167 * 119.99681 * 184.42842 * 14 5 4 17 17 C 1.41282 * 120.54795 * 255.75139 * 16 14 5 18 18 C 1.35185 * 119.83482 * 179.78983 * 17 16 14 19 19 N 1.35784 * 121.00872 * 0.49488 * 18 17 16 20 20 C 1.46504 * 119.42665 * 179.75567 * 19 18 17 21 21 C 1.53782 * 113.60938 * 59.72398 * 20 19 18 22 22 C 1.53787 * 87.07886 * 220.01983 * 21 20 19 23 23 C 1.53782 * 87.17055 * 25.39471 * 22 21 20 24 24 C 1.34590 * 121.15518 * 359.48043 * 19 18 17 25 25 O 1.22028 * 119.95082 * 180.26263 * 24 19 18 26 26 C 1.38524 * 120.55785 * 75.77394 * 16 14 5 27 27 H 1.09006 * 109.46739 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47277 * 300.00160 * 1 2 3 29 29 H 1.09004 * 109.47212 * 60.00721 * 1 2 3 30 30 H 1.08994 * 109.47277 * 239.99840 * 2 1 3 31 31 H 1.09004 * 109.47212 * 119.99279 * 2 1 3 32 32 H 1.08994 * 109.47330 * 59.99872 * 3 2 1 33 33 H 1.09004 * 109.47158 * 299.99521 * 3 2 1 34 34 H 1.08994 * 109.47088 * 59.99774 * 4 3 2 35 35 H 1.09004 * 109.46760 * 299.99814 * 4 3 2 36 36 H 0.97001 * 119.99490 * 179.97438 * 9 8 6 37 37 H 1.08001 * 120.08329 * 0.04752 * 17 16 14 38 38 H 1.08003 * 119.49829 * 180.22751 * 18 17 16 39 39 H 1.08998 * 112.85290 * 190.92673 * 20 19 18 40 40 H 1.08997 * 113.61134 * 105.48029 * 21 20 19 41 41 H 1.08999 * 113.69401 * 334.58016 * 21 20 19 42 42 H 1.09004 * 113.61148 * 139.97879 * 22 21 20 43 43 H 1.08991 * 113.62009 * 270.80368 * 22 21 20 44 44 H 1.08998 * 113.61716 * 89.15791 * 23 22 21 45 45 H 1.09005 * 113.61194 * 220.05682 * 23 22 21 46 46 H 1.07997 * 120.49864 * 0.02562 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2004 3.4972 -1.1793 7 1 3.8332 4.5087 -1.2714 8 6 4.8191 2.8796 -2.2637 9 7 5.2040 1.6284 -2.1740 10 14 5.1010 3.8325 -3.8454 11 1 4.5789 5.2142 -3.6906 12 1 6.5554 3.8827 -4.1406 13 1 4.3919 3.1583 -4.9625 14 6 4.3670 3.4300 1.1636 15 8 4.3174 2.8062 2.2057 16 6 4.7668 4.8567 1.1724 17 6 6.1214 5.2218 1.3389 18 6 6.4706 6.5278 1.3404 19 7 5.5361 7.5020 1.1938 20 6 5.9525 8.9065 1.2059 21 6 6.9558 9.2611 0.0957 22 6 7.6822 10.1282 1.1377 23 6 7.0780 9.2087 2.2121 24 6 4.2346 7.1997 1.0319 25 8 3.4139 8.0926 0.8973 26 6 3.8187 5.8547 1.0179 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9564 -0.8901 34 1 3.9337 0.9287 -0.8890 35 1 3.9329 0.9290 0.8909 36 1 5.6345 1.1982 -2.9293 37 1 6.8766 4.4594 1.4606 38 1 7.5082 6.8007 1.4645 39 1 5.1115 9.5968 1.2713 40 1 6.5182 9.8351 -0.7211 41 1 7.5435 8.4113 -0.2513 42 1 8.7687 10.0694 1.0735 43 1 7.3158 11.1536 1.1843 44 1 7.6986 8.3436 2.4458 45 1 6.7389 9.7402 3.1013 46 1 2.7758 5.6049 0.8895 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198753490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:07 Heat of formation + Delta-G solvation = -38.239291 kcal Electronic energy + Delta-G solvation = -27246.584523 eV Core-core repulsion = 23522.580712 eV Total energy + Delta-G solvation = -3724.003811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.62142 -40.66277 -39.26239 -37.78754 -37.17323 -35.60233 -34.33762 -33.42832 -30.99749 -30.07747 -27.51146 -26.78252 -26.67671 -25.15787 -24.70583 -23.46400 -21.94871 -21.28793 -20.51148 -19.52081 -18.67830 -18.31596 -17.87189 -16.96280 -16.72234 -16.57046 -16.30915 -16.15002 -16.05505 -15.63301 -15.23898 -15.01111 -14.37149 -14.24921 -13.88222 -13.79167 -13.76007 -13.68303 -13.46151 -13.25673 -13.01098 -12.87308 -12.79537 -12.61625 -12.27564 -12.14073 -12.06348 -11.93878 -11.84851 -11.60806 -11.42500 -11.40367 -11.37484 -11.03832 -10.78933 -10.45945 -9.51030 -8.99946 -8.25947 -6.24371 -0.30661 0.79885 1.35565 1.43217 1.54360 1.61542 1.81008 2.24438 2.49298 2.83174 2.99808 3.38929 3.60009 3.68555 3.74234 3.88089 3.90824 3.98891 4.09827 4.18834 4.22954 4.31734 4.32691 4.54951 4.62794 4.70524 4.78290 4.81344 4.85244 4.89034 4.94592 4.99494 5.01325 5.05248 5.08573 5.11460 5.19411 5.32222 5.33822 5.39030 5.41088 5.45484 5.57968 5.68856 6.00302 6.03107 6.39042 6.91277 7.02662 7.39581 7.86179 8.68169 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.004126 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.977920 B = 6784.866881 C = 7755.243682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C -0.114 4.114 4 C 0.095 3.905 5 N -0.429 5.429 6 C -0.353 4.353 7 H 0.082 0.918 8 C 0.019 3.981 9 N -0.886 5.886 10 Si 0.978 3.022 11 H -0.271 1.271 12 H -0.268 1.268 13 H -0.273 1.273 14 C 0.492 3.508 15 O -0.624 6.624 16 C 0.038 3.962 17 C -0.213 4.213 18 C 0.157 3.843 19 N -0.477 5.477 20 C 0.070 3.930 21 C -0.150 4.150 22 C -0.119 4.119 23 C -0.139 4.139 24 C 0.515 3.485 25 O -0.602 6.602 26 C -0.253 4.253 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.050 0.950 34 H 0.118 0.882 35 H 0.037 0.963 36 H 0.276 0.724 37 H 0.157 0.843 38 H 0.220 0.780 39 H 0.112 0.888 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.085 0.915 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.425 10.089 2.435 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.153 4.153 4 C -0.028 4.028 5 N -0.144 5.144 6 C -0.481 4.481 7 H 0.099 0.901 8 C -0.185 4.185 9 N -0.523 5.523 10 Si 0.801 3.199 11 H -0.195 1.195 12 H -0.193 1.193 13 H -0.199 1.199 14 C 0.281 3.719 15 O -0.512 6.512 16 C 0.031 3.969 17 C -0.235 4.235 18 C 0.030 3.970 19 N -0.186 5.186 20 C -0.031 4.031 21 C -0.188 4.188 22 C -0.156 4.156 23 C -0.177 4.177 24 C 0.319 3.681 25 O -0.490 6.490 26 C -0.276 4.276 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.135 0.865 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.175 0.825 38 H 0.236 0.764 39 H 0.130 0.870 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.111 0.889 44 H 0.128 0.872 45 H 0.104 0.896 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.976 10.197 2.690 12.644 hybrid contribution -0.558 -0.138 -0.790 0.977 sum 6.418 10.058 1.900 12.082 Atomic orbital electron populations 1.21720 0.94343 1.02381 1.01623 1.21390 0.96927 0.94921 1.01922 1.21757 0.95720 0.97909 0.99882 1.21901 0.93226 0.84360 1.03264 1.43450 1.53694 1.12522 1.04741 1.19530 1.39393 0.99644 0.89555 0.90077 1.26233 0.93726 0.96256 1.02307 1.69567 1.37972 1.11645 1.33101 0.85105 0.78598 0.78529 0.77658 1.19510 1.19287 1.19878 1.19102 0.80587 0.87654 0.84579 1.90616 1.60219 1.66858 1.33523 1.20455 0.95378 0.92948 0.88145 1.20724 0.94470 0.96709 1.11637 1.22288 0.96600 0.86348 0.91737 1.45515 1.07110 1.09565 1.56364 1.23744 0.98357 0.79379 1.01581 1.23523 0.96718 1.01399 0.97162 1.22654 1.01614 0.98152 0.93213 1.23566 0.94972 1.01512 0.97643 1.16823 0.82203 0.89667 0.79398 1.90841 1.51928 1.49881 1.56348 1.22161 1.00417 0.91251 1.13738 0.90886 0.93097 0.92828 0.91792 0.92178 0.94888 0.93071 0.86508 0.94416 0.91309 0.82522 0.76381 0.86980 0.90989 0.88338 0.88061 0.88865 0.87225 0.89631 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.91 71.98 0.71 -3.28 16 2 C -0.11 -3.87 5.93 30.59 0.18 -3.69 16 3 C -0.11 -4.88 5.52 30.60 0.17 -4.71 16 4 C 0.10 4.69 5.14 86.38 0.44 5.13 16 5 N -0.43 -22.21 2.51 -638.52 -1.61 -23.82 16 6 C -0.35 -18.14 8.45 84.21 0.71 -17.43 16 7 H 0.08 4.24 6.85 -2.91 -0.02 4.22 16 8 C 0.02 0.92 5.41 85.04 0.46 1.38 16 9 N -0.89 -45.02 10.75 21.72 0.23 -44.79 16 10 Si 0.98 39.34 29.56 68.60 2.03 41.37 16 11 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 12 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 13 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 14 C 0.49 25.22 7.10 86.88 0.62 25.84 16 15 O -0.62 -34.81 16.60 -3.89 -0.06 -34.88 16 16 C 0.04 1.65 4.47 -19.82 -0.09 1.56 16 17 C -0.21 -7.12 9.78 22.31 0.22 -6.90 16 18 C 0.16 3.87 8.94 83.38 0.75 4.61 16 19 N -0.48 -13.97 2.83 -625.36 -1.77 -15.74 16 20 C 0.07 1.53 4.18 45.58 0.19 1.72 16 21 C -0.15 -2.40 7.67 31.12 0.24 -2.17 16 22 C -0.12 -1.17 8.08 31.12 0.25 -0.92 16 23 C -0.14 -1.77 7.49 31.18 0.23 -1.53 16 24 C 0.51 20.59 7.41 84.89 0.63 21.22 16 25 O -0.60 -27.27 16.51 -5.41 -0.09 -27.35 16 26 C -0.25 -11.06 8.98 22.96 0.21 -10.86 16 27 H 0.07 1.67 8.14 -2.38 -0.02 1.66 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.12 6.04 5.16 -2.39 -0.01 6.03 16 35 H 0.04 1.93 7.24 -2.38 -0.02 1.91 16 36 H 0.28 13.08 8.30 -92.71 -0.77 12.31 16 37 H 0.16 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.22 2.74 6.37 -2.91 -0.02 2.72 16 39 H 0.11 2.91 7.17 -2.39 -0.02 2.89 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 1.45 7.55 -2.39 -0.02 1.43 16 42 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.11 1.02 6.18 -2.39 -0.01 1.00 16 45 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 46 H 0.12 5.75 8.06 -2.91 -0.02 5.73 16 Total: -1.00 -71.80 375.06 5.63 -66.18 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.97 Total: 29.05 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 5.92 Total: 9.98 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -3.14 Total: -84.35 kcal Atomic # 8 Polarization: -62.08 SS G_CDS: -0.15 Total: -62.23 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -71.80 5.63 -66.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198753490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.936 kcal (2) G-P(sol) polarization free energy of solvation -71.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds