Wall clock time and date at job start Tue Mar 31 2020 12:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47204 * 2 1 4 4 C 1.52998 * 109.47010 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.47358 * 179.97438 * 4 3 2 6 6 C 1.36934 * 119.99832 * 264.31003 * 5 4 3 7 7 H 1.08002 * 119.99478 * 135.45884 * 6 5 4 8 8 C 1.38992 * 120.00156 * 315.45434 * 6 5 4 9 9 N 1.31403 * 119.99535 * 2.80008 * 8 6 5 10 10 Si 1.86796 * 120.00177 * 182.79953 * 8 6 5 11 11 H 1.48499 * 109.47156 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47099 * 119.99945 * 10 8 6 13 13 H 1.48501 * 109.47318 * 240.00069 * 10 8 6 14 14 C 1.34774 * 119.99890 * 84.30080 * 5 4 3 15 15 O 1.21645 * 120.00020 * 4.56241 * 14 5 4 16 16 C 1.47359 * 120.00116 * 184.56031 * 14 5 4 17 17 C 1.41632 * 120.26153 * 255.89616 * 16 14 5 18 18 C 1.35960 * 119.00562 * 179.97438 * 17 16 14 19 19 C 1.40774 * 119.51248 * 359.97438 * 18 17 16 20 20 O 1.21964 * 119.74593 * 179.97438 * 19 18 17 21 21 N 1.34540 * 120.51424 * 359.97438 * 19 18 17 22 22 C 1.46496 * 119.47705 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.46973 * 90.00194 * 22 21 19 24 24 C 1.53010 * 117.49519 * 243.62120 * 23 22 21 25 25 C 1.53003 * 117.49959 * 174.99946 * 23 22 21 26 26 C 1.34600 * 121.04569 * 0.03953 * 21 19 18 27 27 H 1.08998 * 109.46726 * 299.99972 * 1 2 3 28 28 H 1.08996 * 109.46805 * 60.00377 * 1 2 3 29 29 H 1.09006 * 109.47015 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46991 * 239.99305 * 2 1 3 31 31 H 1.09001 * 109.47218 * 119.99814 * 2 1 3 32 32 H 1.08988 * 109.47606 * 59.99992 * 3 2 1 33 33 H 1.08996 * 109.46932 * 299.99546 * 3 2 1 34 34 H 1.08995 * 109.47787 * 59.99737 * 4 3 2 35 35 H 1.09001 * 109.47046 * 299.99590 * 4 3 2 36 36 H 0.97006 * 119.99408 * 179.97438 * 9 8 6 37 37 H 1.07997 * 120.49916 * 0.02562 * 17 16 14 38 38 H 1.08004 * 120.24437 * 180.27255 * 18 17 16 39 39 H 1.09002 * 109.47392 * 209.99726 * 22 21 19 40 40 H 1.09003 * 109.47522 * 330.00161 * 22 21 19 41 41 H 1.08994 * 115.55482 * 29.32578 * 23 22 21 42 42 H 1.08989 * 117.49840 * 359.97438 * 24 23 22 43 43 H 1.08997 * 117.49669 * 145.02189 * 24 23 22 44 44 H 1.09000 * 117.50014 * 214.97788 * 25 23 22 45 45 H 1.09004 * 117.49804 * 359.97438 * 25 23 22 46 46 H 1.08000 * 119.77913 * 179.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0585 2.8237 -0.0013 6 6 4.3971 3.4296 -1.1816 7 1 4.0765 4.4416 -1.3805 8 6 5.1533 2.7423 -2.1238 9 7 5.4966 1.4927 -1.9058 10 14 5.6815 3.5948 -3.6997 11 1 5.1710 4.9892 -3.7032 12 1 7.1642 3.6108 -3.7808 13 1 5.1298 2.8622 -4.8677 14 6 4.1743 3.4979 1.1599 15 8 3.9531 2.9346 2.2151 16 6 4.5691 4.9177 1.1513 17 6 5.8850 5.2948 1.5148 18 6 6.2219 6.6119 1.4975 19 6 5.2607 7.5686 1.1198 20 8 5.5582 8.7513 1.1032 21 7 4.0165 7.1885 0.7771 22 6 3.0344 8.2032 0.3873 23 6 3.1094 8.4316 -1.1237 24 6 3.5358 9.8189 -1.6082 25 6 2.0784 9.3742 -1.7478 26 6 3.6596 5.8907 0.7870 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9285 0.8892 36 1 6.0241 1.0129 -2.5635 37 1 6.6102 4.5474 1.8008 38 1 7.2209 6.9215 1.7667 39 1 2.0340 7.8620 0.6539 40 1 3.2504 9.1367 0.9070 41 1 3.4278 7.5723 -1.7139 42 1 3.7623 10.5689 -0.8504 43 1 4.1349 9.8724 -2.5171 44 1 1.7188 9.1353 -2.7486 45 1 1.3464 9.8314 -1.0819 46 1 2.6550 5.6085 0.5085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198912167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:05 Heat of formation + Delta-G solvation = -19.043371 kcal Electronic energy + Delta-G solvation = -27378.449499 eV Core-core repulsion = 23655.278085 eV Total energy + Delta-G solvation = -3723.171414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.11966 -38.71699 -37.42467 -36.34261 -35.34330 -34.02617 -33.80513 -31.56440 -29.86009 -28.27483 -27.62201 -25.02516 -24.08464 -23.22146 -22.41243 -22.22706 -20.86007 -20.44753 -19.47848 -18.06798 -17.10060 -16.58476 -16.03989 -15.84317 -15.65942 -14.89143 -14.76795 -14.62640 -14.31747 -13.99023 -13.80098 -13.76410 -13.31136 -13.01963 -12.80277 -12.31051 -12.24522 -12.10449 -12.00228 -11.73842 -11.58805 -11.43823 -11.28071 -11.23248 -10.98069 -10.61385 -10.58369 -10.51285 -10.33001 -10.28348 -10.10018 -9.77796 -9.71114 -9.59540 -9.14783 -8.71847 -7.62792 -7.40717 -6.39102 -4.28049 1.22430 2.17541 2.80358 3.04533 3.15015 3.16557 3.69974 3.71243 3.94028 4.05935 4.56171 4.66955 4.76848 4.82369 4.88766 4.97420 5.13070 5.21200 5.35434 5.38651 5.46590 5.49172 5.53545 5.58617 5.64072 5.69563 5.84086 5.95185 6.03564 6.06765 6.12840 6.22775 6.32392 6.36179 6.38762 6.44297 6.57358 6.72270 6.73778 6.81386 6.83498 7.11718 7.26621 7.36889 7.57158 7.91523 8.29748 8.34071 8.96165 9.36003 9.79328 10.56711 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010438 B = 0.004625 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.944399 B = 6053.119494 C = 6432.257140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.105 3.895 5 N -0.428 5.428 6 C -0.333 4.333 7 H 0.085 0.915 8 C 0.049 3.951 9 N -0.867 5.867 10 Si 0.915 3.085 11 H -0.269 1.269 12 H -0.278 1.278 13 H -0.279 1.279 14 C 0.523 3.477 15 O -0.593 6.593 16 C -0.171 4.171 17 C 0.027 3.973 18 C -0.259 4.259 19 C 0.516 3.484 20 O -0.565 6.565 21 N -0.485 5.485 22 C 0.123 3.877 23 C -0.174 4.174 24 C -0.167 4.167 25 C -0.172 4.172 26 C 0.149 3.851 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.125 0.875 35 H 0.049 0.951 36 H 0.270 0.730 37 H 0.134 0.866 38 H 0.146 0.854 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.713 6.636 -0.427 9.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.018 4.018 5 N -0.144 5.144 6 C -0.461 4.461 7 H 0.103 0.897 8 C -0.157 4.157 9 N -0.504 5.504 10 Si 0.741 3.259 11 H -0.193 1.193 12 H -0.204 1.204 13 H -0.205 1.205 14 C 0.310 3.690 15 O -0.478 6.478 16 C -0.179 4.179 17 C 0.005 3.995 18 C -0.280 4.280 19 C 0.319 3.681 20 O -0.450 6.450 21 N -0.194 5.194 22 C 0.002 3.998 23 C -0.193 4.193 24 C -0.204 4.204 25 C -0.210 4.210 26 C 0.020 3.980 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.143 0.857 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.152 0.848 38 H 0.164 0.836 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.130 0.870 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.546 6.956 -0.058 9.552 hybrid contribution 0.364 0.170 -1.047 1.122 sum -6.181 7.126 -1.106 9.498 Atomic orbital electron populations 1.21761 0.96743 1.00683 1.01375 1.21413 0.94827 0.97736 1.01697 1.21915 0.98182 0.95574 1.00947 1.21770 0.90719 0.84701 1.04627 1.43414 1.54521 1.11926 1.04585 1.19368 1.32444 0.99940 0.94339 0.89698 1.25482 0.94914 0.95551 0.99721 1.69622 1.35790 1.09052 1.35935 0.86051 0.78915 0.79584 0.81328 1.19323 1.20384 1.20530 1.17971 0.81094 0.85565 0.84381 1.90669 1.55988 1.69804 1.31381 1.19541 0.94659 0.94637 1.09038 1.21365 0.94247 0.95931 0.87992 1.21873 1.00932 0.92645 1.12578 1.17109 0.81341 0.90045 0.79571 1.90859 1.78480 1.18070 1.57554 1.45050 1.13121 1.06870 1.54354 1.21516 0.91424 0.93035 0.93845 1.22631 1.05748 0.95735 0.95185 1.23005 0.96960 0.97112 1.03292 1.22958 0.92623 1.03202 1.02197 1.21982 1.00054 0.81986 0.93963 0.93159 0.93087 0.93437 0.92123 0.92422 0.93258 0.92469 0.85737 0.93201 0.91881 0.84807 0.83638 0.88880 0.88156 0.86957 0.88330 0.88852 0.88502 0.88615 0.82233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.89 5.93 -26.73 -0.16 -2.05 16 3 C -0.13 -2.42 5.50 -26.73 -0.15 -2.57 16 4 C 0.10 2.35 4.90 -4.04 -0.02 2.33 16 5 N -0.43 -9.96 2.54 -116.05 -0.29 -10.26 16 6 C -0.33 -7.80 8.53 -14.99 -0.13 -7.93 16 7 H 0.09 1.92 6.78 -52.49 -0.36 1.56 16 8 C 0.05 1.16 5.36 -17.46 -0.09 1.07 16 9 N -0.87 -21.59 10.76 55.50 0.60 -20.99 16 10 Si 0.91 18.92 29.55 -169.99 -5.02 13.90 16 11 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 12 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 13 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 14 C 0.52 11.94 7.00 -12.55 -0.09 11.85 16 15 O -0.59 -15.00 16.76 5.24 0.09 -14.92 16 16 C -0.17 -3.33 4.42 -104.95 -0.46 -3.79 16 17 C 0.03 0.49 9.86 -39.10 -0.39 0.10 16 18 C -0.26 -4.47 9.97 -39.44 -0.39 -4.86 16 19 C 0.52 9.34 7.40 -15.41 -0.11 9.23 16 20 O -0.57 -11.34 16.58 4.95 0.08 -11.25 16 21 N -0.48 -7.67 2.55 -119.28 -0.30 -7.97 16 22 C 0.12 1.55 5.58 -4.04 -0.02 1.53 16 23 C -0.17 -2.17 6.01 -90.61 -0.54 -2.72 16 24 C -0.17 -1.94 10.18 -26.72 -0.27 -2.21 16 25 C -0.17 -1.69 10.25 -26.73 -0.27 -1.97 16 26 C 0.15 2.46 9.16 -16.40 -0.15 2.31 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.97 8.14 -51.94 -0.42 0.54 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.13 3.00 5.23 -51.93 -0.27 2.73 16 35 H 0.05 1.18 7.54 -51.93 -0.39 0.79 16 36 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 37 H 0.13 2.32 8.06 -52.49 -0.42 1.89 16 38 H 0.15 2.24 8.06 -52.48 -0.42 1.82 16 39 H 0.09 0.92 8.00 -51.93 -0.42 0.50 16 40 H 0.10 1.29 7.10 -51.93 -0.37 0.92 16 41 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 42 H 0.10 1.16 8.03 -51.94 -0.42 0.74 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.16 2.31 8.02 -52.49 -0.42 1.89 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -29.27 384.69 -9.22 -38.48 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -7.27 Total: 8.50 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -2.89 Total: -1.28 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.00 Total: -39.22 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: 0.17 Total: -26.17 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.27 -9.22 -38.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198912167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.439 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds