Wall clock time and date at job start Tue Mar 31 2020 12:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47204 * 2 1 4 4 C 1.52998 * 109.47010 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.47358 * 179.97438 * 4 3 2 6 6 C 1.36934 * 119.99832 * 264.31003 * 5 4 3 7 7 H 1.08002 * 119.99478 * 135.45884 * 6 5 4 8 8 C 1.38992 * 120.00156 * 315.45434 * 6 5 4 9 9 N 1.31403 * 119.99535 * 2.80008 * 8 6 5 10 10 Si 1.86796 * 120.00177 * 182.79953 * 8 6 5 11 11 H 1.48499 * 109.47156 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47099 * 119.99945 * 10 8 6 13 13 H 1.48501 * 109.47318 * 240.00069 * 10 8 6 14 14 C 1.34774 * 119.99890 * 84.30080 * 5 4 3 15 15 O 1.21645 * 120.00020 * 4.56241 * 14 5 4 16 16 C 1.47359 * 120.00116 * 184.56031 * 14 5 4 17 17 C 1.41632 * 120.26153 * 255.89616 * 16 14 5 18 18 C 1.35960 * 119.00562 * 179.97438 * 17 16 14 19 19 C 1.40774 * 119.51248 * 359.97438 * 18 17 16 20 20 O 1.21964 * 119.74593 * 179.97438 * 19 18 17 21 21 N 1.34540 * 120.51424 * 359.97438 * 19 18 17 22 22 C 1.46496 * 119.47705 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.46973 * 90.00194 * 22 21 19 24 24 C 1.53010 * 117.49519 * 243.62120 * 23 22 21 25 25 C 1.53003 * 117.49959 * 174.99946 * 23 22 21 26 26 C 1.34600 * 121.04569 * 0.03953 * 21 19 18 27 27 H 1.08998 * 109.46726 * 299.99972 * 1 2 3 28 28 H 1.08996 * 109.46805 * 60.00377 * 1 2 3 29 29 H 1.09006 * 109.47015 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46991 * 239.99305 * 2 1 3 31 31 H 1.09001 * 109.47218 * 119.99814 * 2 1 3 32 32 H 1.08988 * 109.47606 * 59.99992 * 3 2 1 33 33 H 1.08996 * 109.46932 * 299.99546 * 3 2 1 34 34 H 1.08995 * 109.47787 * 59.99737 * 4 3 2 35 35 H 1.09001 * 109.47046 * 299.99590 * 4 3 2 36 36 H 0.97006 * 119.99408 * 179.97438 * 9 8 6 37 37 H 1.07997 * 120.49916 * 0.02562 * 17 16 14 38 38 H 1.08004 * 120.24437 * 180.27255 * 18 17 16 39 39 H 1.09002 * 109.47392 * 209.99726 * 22 21 19 40 40 H 1.09003 * 109.47522 * 330.00161 * 22 21 19 41 41 H 1.08994 * 115.55482 * 29.32578 * 23 22 21 42 42 H 1.08989 * 117.49840 * 359.97438 * 24 23 22 43 43 H 1.08997 * 117.49669 * 145.02189 * 24 23 22 44 44 H 1.09000 * 117.50014 * 214.97788 * 25 23 22 45 45 H 1.09004 * 117.49804 * 359.97438 * 25 23 22 46 46 H 1.08000 * 119.77913 * 179.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0585 2.8237 -0.0013 6 6 4.3971 3.4296 -1.1816 7 1 4.0765 4.4416 -1.3805 8 6 5.1533 2.7423 -2.1238 9 7 5.4966 1.4927 -1.9058 10 14 5.6815 3.5948 -3.6997 11 1 5.1710 4.9892 -3.7032 12 1 7.1642 3.6108 -3.7808 13 1 5.1298 2.8622 -4.8677 14 6 4.1743 3.4979 1.1599 15 8 3.9531 2.9346 2.2151 16 6 4.5691 4.9177 1.1513 17 6 5.8850 5.2948 1.5148 18 6 6.2219 6.6119 1.4975 19 6 5.2607 7.5686 1.1198 20 8 5.5582 8.7513 1.1032 21 7 4.0165 7.1885 0.7771 22 6 3.0344 8.2032 0.3873 23 6 3.1094 8.4316 -1.1237 24 6 3.5358 9.8189 -1.6082 25 6 2.0784 9.3742 -1.7478 26 6 3.6596 5.8907 0.7870 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9285 0.8892 36 1 6.0241 1.0129 -2.5635 37 1 6.6102 4.5474 1.8008 38 1 7.2209 6.9215 1.7667 39 1 2.0340 7.8620 0.6539 40 1 3.2504 9.1367 0.9070 41 1 3.4278 7.5723 -1.7139 42 1 3.7623 10.5689 -0.8504 43 1 4.1349 9.8724 -2.5171 44 1 1.7188 9.1353 -2.7486 45 1 1.3464 9.8314 -1.0819 46 1 2.6550 5.6085 0.5085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198912167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:04 Heat of formation + Delta-G solvation = -32.464041 kcal Electronic energy + Delta-G solvation = -27379.031463 eV Core-core repulsion = 23655.278085 eV Total energy + Delta-G solvation = -3723.753378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.48948 -40.45819 -38.42374 -37.80083 -37.04704 -35.54840 -35.12826 -33.38009 -31.32484 -29.70386 -28.79363 -26.82920 -25.50945 -24.62491 -23.64556 -23.23254 -22.03344 -21.75843 -21.18658 -19.64717 -18.48943 -18.06030 -17.69272 -17.21227 -16.90540 -16.49974 -16.28775 -16.06618 -15.69107 -15.38883 -15.12401 -15.02730 -14.89747 -14.29105 -14.09476 -13.75759 -13.70129 -13.54515 -13.29467 -13.21573 -13.00338 -12.88528 -12.75150 -12.42764 -12.36913 -12.10846 -12.03590 -11.85056 -11.77005 -11.53787 -11.36741 -11.08196 -10.99672 -10.95423 -10.93432 -10.53728 -9.44086 -8.87519 -8.21605 -6.15188 -0.14199 0.69404 1.37961 1.45406 1.53514 1.54761 1.97854 2.29051 2.57366 2.82986 3.01023 3.08162 3.55940 3.71566 3.72182 3.91653 3.95737 4.07157 4.15131 4.17366 4.21541 4.28181 4.35758 4.41225 4.51196 4.57948 4.64731 4.77899 4.91686 4.94398 4.97441 4.99517 5.02912 5.06623 5.13680 5.20201 5.24184 5.26246 5.30953 5.41897 5.45940 5.47914 5.51660 5.74732 5.98577 6.10656 6.46132 6.93330 7.11810 7.55130 7.98418 8.74827 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010438 B = 0.004625 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.944399 B = 6053.119494 C = 6432.257140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.114 4.114 4 C 0.105 3.895 5 N -0.436 5.436 6 C -0.335 4.335 7 H 0.095 0.905 8 C 0.009 3.991 9 N -0.896 5.896 10 Si 0.973 3.027 11 H -0.261 1.261 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.521 3.479 15 O -0.626 6.626 16 C -0.203 4.203 17 C 0.021 3.979 18 C -0.259 4.259 19 C 0.508 3.492 20 O -0.587 6.587 21 N -0.477 5.477 22 C 0.119 3.881 23 C -0.192 4.192 24 C -0.180 4.180 25 C -0.142 4.142 26 C 0.176 3.824 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.110 0.890 35 H 0.026 0.974 36 H 0.271 0.729 37 H 0.134 0.866 38 H 0.161 0.839 39 H 0.127 0.873 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.117 0.883 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.606 7.962 -1.468 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.152 4.152 4 C -0.018 4.018 5 N -0.153 5.153 6 C -0.463 4.463 7 H 0.112 0.888 8 C -0.194 4.194 9 N -0.534 5.534 10 Si 0.797 3.203 11 H -0.185 1.185 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.310 3.690 15 O -0.514 6.514 16 C -0.211 4.211 17 C -0.002 4.002 18 C -0.280 4.280 19 C 0.312 3.688 20 O -0.473 6.473 21 N -0.184 5.184 22 C -0.001 4.001 23 C -0.211 4.211 24 C -0.217 4.217 25 C -0.179 4.179 26 C 0.045 3.955 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.152 0.848 38 H 0.179 0.821 39 H 0.145 0.855 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.125 0.875 45 H 0.136 0.864 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.461 8.297 -1.113 11.903 hybrid contribution 0.951 -0.232 -0.707 1.208 sum -7.510 8.065 -1.821 11.170 Atomic orbital electron populations 1.21709 0.94201 1.02219 1.01821 1.21398 0.97011 0.95456 1.01568 1.21769 0.95437 0.97642 1.00388 1.21718 0.93081 0.84432 1.02566 1.43624 1.54584 1.12087 1.04965 1.19606 1.32284 1.00229 0.94207 0.88775 1.26171 0.94949 0.95946 1.02301 1.69744 1.36542 1.10187 1.36944 0.85163 0.77853 0.78996 0.78244 1.18499 1.21167 1.20040 1.18358 0.80245 0.86820 0.83623 1.90632 1.57348 1.71027 1.32370 1.19335 0.96049 0.93399 1.12335 1.21364 0.93996 0.96385 0.88416 1.21997 1.01681 0.92044 1.12272 1.17259 0.82153 0.89766 0.79598 1.90847 1.79061 1.18817 1.58616 1.45151 1.13178 1.07205 1.52895 1.21839 0.92033 0.92182 0.94049 1.22561 1.08297 0.95495 0.94773 1.23041 0.98910 0.96593 1.03139 1.23067 0.91758 1.00330 1.02783 1.22176 1.00268 0.81686 0.91322 0.92879 0.92471 0.91400 0.92173 0.92710 0.94082 0.92438 0.87225 0.95588 0.91869 0.84824 0.82145 0.85478 0.88293 0.88823 0.88660 0.89235 0.87467 0.86439 0.79733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.91 71.98 0.71 -2.78 16 2 C -0.12 -3.63 5.93 30.59 0.18 -3.45 16 3 C -0.11 -4.32 5.50 30.59 0.17 -4.15 16 4 C 0.11 4.85 4.90 86.38 0.42 5.27 16 5 N -0.44 -20.58 2.54 -639.31 -1.62 -22.21 16 6 C -0.34 -15.64 8.53 84.08 0.72 -14.92 16 7 H 0.09 4.14 6.78 -2.91 -0.02 4.12 16 8 C 0.01 0.41 5.36 84.94 0.46 0.87 16 9 N -0.90 -45.24 10.76 21.67 0.23 -45.01 16 10 Si 0.97 38.35 29.55 68.60 2.03 40.38 16 11 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 12 H -0.29 -11.55 7.11 99.48 0.71 -10.84 16 13 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 14 C 0.52 24.11 7.00 86.64 0.61 24.72 16 15 O -0.63 -32.47 16.76 -4.17 -0.07 -32.54 16 16 C -0.20 -7.87 4.42 -20.08 -0.09 -7.96 16 17 C 0.02 0.76 9.86 22.58 0.22 0.98 16 18 C -0.26 -8.80 9.97 22.36 0.22 -8.57 16 19 C 0.51 17.86 7.40 84.90 0.63 18.49 16 20 O -0.59 -22.99 16.58 -5.20 -0.09 -23.08 16 21 N -0.48 -14.24 2.55 -649.52 -1.66 -15.89 16 22 C 0.12 2.68 5.58 86.38 0.48 3.16 16 23 C -0.19 -4.35 6.01 -10.79 -0.06 -4.41 16 24 C -0.18 -3.86 10.18 30.60 0.31 -3.54 16 25 C -0.14 -2.31 10.25 30.60 0.31 -2.00 16 26 C 0.18 5.54 9.16 84.23 0.77 6.31 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 34 H 0.11 5.43 5.23 -2.39 -0.01 5.42 16 35 H 0.03 1.28 7.54 -2.39 -0.02 1.26 16 36 H 0.27 13.00 8.31 -92.70 -0.77 12.23 16 37 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.16 4.84 8.06 -2.91 -0.02 4.82 16 39 H 0.13 1.99 8.00 -2.39 -0.02 1.97 16 40 H 0.10 2.32 7.10 -2.39 -0.02 2.30 16 41 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.09 2.09 8.03 -2.39 -0.02 2.08 16 43 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.19 4.85 8.02 -2.91 -0.02 4.82 16 Total: -1.00 -63.70 384.69 5.85 -57.85 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.96 Total: 32.47 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 6.06 Total: 8.02 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -3.05 Total: -83.11 kcal Atomic # 8 Polarization: -55.46 SS G_CDS: -0.16 Total: -55.61 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -63.70 5.85 -57.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198912167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.390 kcal (2) G-P(sol) polarization free energy of solvation -63.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds