Wall clock time and date at job start Tue Mar 31 2020 13:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47087 * 2 1 4 4 C 1.50702 * 109.47222 * 180.02562 * 3 2 1 5 5 O 1.21290 * 119.99985 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99884 * 180.02562 * 4 3 2 7 7 C 1.40108 * 119.99908 * 175.47748 * 6 4 3 8 8 C 1.38852 * 120.01295 * 215.09366 * 7 6 4 9 9 C 1.38086 * 119.98124 * 179.74717 * 8 7 6 10 10 C 1.38724 * 120.01802 * 0.55056 * 9 8 7 11 11 O 1.35973 * 119.98868 * 179.72534 * 10 9 8 12 12 C 1.42899 * 117.00214 * 183.19387 * 11 10 9 13 13 H 1.08998 * 110.63921 * 325.57657 * 12 11 10 14 14 C 1.55155 * 110.72032 * 202.43303 * 12 11 10 15 15 C 1.54909 * 101.58016 * 206.13690 * 14 12 11 16 16 N 1.47425 * 104.83652 * 37.00748 * 15 14 12 17 17 C 1.36934 * 125.64941 * 155.90463 * 16 15 14 18 18 H 1.08001 * 119.99763 * 179.97438 * 17 16 15 19 19 C 1.38807 * 119.99905 * 359.97438 * 17 16 15 20 20 N 1.31617 * 120.00265 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99952 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46998 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47334 * 119.99495 * 21 19 17 24 24 H 1.48499 * 109.47325 * 239.99932 * 21 19 17 25 25 C 1.47028 * 108.69906 * 335.87313 * 16 15 14 26 26 C 1.38726 * 120.02797 * 359.70185 * 10 9 8 27 27 C 1.38088 * 120.01511 * 0.02562 * 26 10 9 28 28 H 1.09006 * 109.46848 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47443 * 60.00199 * 1 2 3 30 30 H 1.08995 * 109.47140 * 299.99650 * 1 2 3 31 31 H 1.08998 * 109.47443 * 119.99801 * 2 1 3 32 32 H 1.09004 * 109.47159 * 240.00069 * 2 1 3 33 33 H 1.09005 * 109.47052 * 299.99876 * 3 2 1 34 34 H 1.08999 * 109.47519 * 59.99918 * 3 2 1 35 35 H 0.97000 * 119.99739 * 355.47395 * 6 4 3 36 36 H 1.07997 * 120.00591 * 359.97438 * 8 7 6 37 37 H 1.08000 * 119.98994 * 180.29673 * 9 8 7 38 38 H 1.08999 * 111.00596 * 324.20711 * 14 12 11 39 39 H 1.09000 * 111.00492 * 88.02170 * 14 12 11 40 40 H 1.08992 * 110.36723 * 155.85235 * 15 14 12 41 41 H 1.09002 * 110.36621 * 278.17190 * 15 14 12 42 42 H 0.97001 * 119.99865 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.88049 * 241.64000 * 25 16 15 44 44 H 1.09010 * 109.87798 * 120.47470 * 25 16 15 45 45 H 1.07994 * 119.99017 * 180.02562 * 26 10 9 46 46 H 1.07994 * 120.00717 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1535 0.3921 -0.0006 6 7 4.2208 2.6098 -0.0002 7 6 5.6187 2.6116 0.0949 8 6 6.2660 3.6224 0.7929 9 6 7.6434 3.6208 0.8907 10 6 8.3811 2.6159 0.2820 11 8 9.7377 2.6180 0.3739 12 6 10.4376 1.5935 -0.3351 13 1 9.8626 0.6674 -0.3388 14 6 11.8440 1.3640 0.2785 15 6 12.6272 0.8098 -0.9377 16 7 12.1085 1.5614 -2.0950 17 6 12.7737 1.7715 -3.2734 18 1 12.3049 2.3379 -4.0645 19 6 14.0504 1.2566 -3.4510 20 7 14.6219 0.5668 -2.4867 21 14 14.9575 1.5426 -5.0587 22 1 14.1032 2.3414 -5.9738 23 1 16.2195 2.2780 -4.7909 24 1 15.2707 0.2353 -5.6897 25 6 10.7583 2.0473 -1.7747 26 6 7.7353 1.6086 -0.4200 27 6 6.3576 1.6059 -0.5138 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.7380 3.4485 -0.0658 36 1 5.6921 4.4077 1.2624 37 1 8.1467 4.4043 1.4376 38 1 12.2762 2.3021 0.6269 39 1 11.8038 0.6316 1.0848 40 1 13.6951 0.9907 -0.8156 41 1 12.4337 -0.2559 -1.0599 42 1 15.5142 0.2073 -2.6107 43 1 10.0356 1.6179 -2.4685 44 1 10.7320 3.1354 -1.8350 45 1 8.3102 0.8264 -0.8933 46 1 5.8550 0.8220 -1.0607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229484035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:49 Heat of formation + Delta-G solvation = -23.546768 kcal Electronic energy + Delta-G solvation = -25832.554704 eV Core-core repulsion = 22109.188009 eV Total energy + Delta-G solvation = -3723.366696 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.75948 -39.70156 -37.82781 -36.22425 -34.75221 -34.43290 -32.29495 -31.00324 -29.70446 -29.14366 -27.72951 -27.13319 -24.58553 -23.37891 -22.82494 -21.66855 -20.51490 -20.22499 -20.04051 -18.23442 -17.57523 -17.16287 -16.96289 -16.30865 -15.49230 -15.16308 -14.86801 -14.68468 -14.42834 -14.31047 -13.87070 -13.75422 -13.51590 -13.37081 -12.93616 -12.71824 -12.50302 -12.37167 -12.23018 -12.12395 -11.79136 -11.59070 -11.55108 -11.15175 -11.10675 -10.97849 -10.79831 -10.58212 -10.34699 -10.10712 -9.99087 -9.80355 -9.69678 -9.56564 -8.96195 -8.68706 -7.64780 -6.88152 -5.68423 -3.10603 1.31268 1.42403 2.37828 2.82349 3.39254 3.44191 3.46997 3.52758 3.82359 4.31607 4.46811 4.47648 4.58288 4.86991 4.93294 5.01584 5.06347 5.16342 5.17927 5.30462 5.31955 5.34823 5.41913 5.48339 5.56761 5.64146 5.65815 5.72813 5.75128 5.83254 5.93626 6.07400 6.27459 6.28382 6.39929 6.44514 6.50447 6.50990 6.63193 6.65141 6.91884 7.17063 7.43958 7.59684 7.72824 7.82251 7.90675 8.31368 9.18336 9.78614 10.42044 11.36012 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021758 B = 0.002255 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.558968 B =12413.407765 C =12981.031344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.138 4.138 4 C 0.507 3.493 5 O -0.521 6.521 6 N -0.671 5.671 7 C 0.088 3.912 8 C -0.104 4.104 9 C -0.142 4.142 10 C 0.133 3.867 11 O -0.304 6.304 12 C 0.067 3.933 13 H 0.078 0.922 14 C -0.136 4.136 15 C 0.152 3.848 16 N -0.601 5.601 17 C -0.222 4.222 18 H 0.079 0.921 19 C -0.012 4.012 20 N -0.923 5.923 21 Si 0.917 3.083 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.120 3.880 26 C -0.192 4.192 27 C -0.075 4.075 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.408 0.592 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.114 0.886 41 H 0.017 0.983 42 H 0.253 0.747 43 H 0.026 0.974 44 H 0.035 0.965 45 H 0.136 0.864 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.967 4.619 8.252 27.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.178 4.178 4 C 0.295 3.705 5 O -0.397 6.397 6 N -0.317 5.317 7 C -0.005 4.005 8 C -0.124 4.124 9 C -0.162 4.162 10 C 0.086 3.914 11 O -0.216 6.216 12 C 0.011 3.989 13 H 0.096 0.904 14 C -0.174 4.174 15 C 0.028 3.972 16 N -0.328 5.328 17 C -0.350 4.350 18 H 0.097 0.903 19 C -0.207 4.207 20 N -0.572 5.572 21 Si 0.747 3.253 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.007 4.007 26 C -0.211 4.211 27 C -0.095 4.095 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.243 0.757 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.132 0.868 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.044 0.956 44 H 0.053 0.947 45 H 0.154 0.846 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -25.255 3.919 8.255 26.858 hybrid contribution 0.105 0.407 -0.985 1.071 sum -25.151 4.326 7.270 26.535 Atomic orbital electron populations 1.21791 0.95354 1.02119 1.01756 1.21300 0.95362 0.94451 1.03822 1.21727 0.90944 1.00610 1.04560 1.20958 0.90557 0.83367 0.75603 1.90729 1.70122 1.31217 1.47583 1.43464 1.05208 1.09558 1.73470 1.17569 0.82221 0.98896 1.01815 1.20599 0.93811 0.99016 0.98983 1.20191 0.92529 0.99352 1.04079 1.19129 0.83569 0.93927 0.94763 1.86173 1.14793 1.52477 1.68179 1.23706 0.93212 0.88804 0.93178 0.90371 1.23200 0.92633 1.01667 0.99932 1.22001 1.00584 0.92867 0.81799 1.44387 1.11842 1.62106 1.14510 1.19132 0.96754 1.28360 0.90749 0.90310 1.24806 0.97305 1.00119 0.98477 1.69769 1.15349 1.40623 1.31414 0.85959 0.79586 0.77360 0.82356 1.20493 1.21661 1.21706 1.21675 0.89124 0.97798 0.92064 1.21328 0.95009 1.00452 1.04350 1.21019 0.92793 0.98244 0.97416 0.92292 0.92646 0.92684 0.91100 0.91061 0.88693 0.88677 0.75697 0.85427 0.84902 0.90792 0.91513 0.86842 0.96546 0.93655 0.95626 0.94688 0.84647 0.84448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.38 16 2 C -0.11 -0.76 5.22 -26.73 -0.14 -0.90 16 3 C -0.14 -0.79 5.70 -27.88 -0.16 -0.95 16 4 C 0.51 4.98 7.67 -10.98 -0.08 4.89 16 5 O -0.52 -7.38 13.44 5.55 0.07 -7.31 16 6 N -0.67 -5.88 5.34 -9.83 -0.05 -5.94 16 7 C 0.09 1.06 6.30 -83.62 -0.53 0.54 16 8 C -0.10 -1.15 9.96 -39.41 -0.39 -1.54 16 9 C -0.14 -1.88 9.98 -39.46 -0.39 -2.27 16 10 C 0.13 2.11 6.67 -39.22 -0.26 1.85 16 11 O -0.30 -5.46 9.87 -19.65 -0.19 -5.65 16 12 C 0.07 1.28 2.82 -24.90 -0.07 1.21 16 13 H 0.08 1.40 5.92 -51.93 -0.31 1.09 16 14 C -0.14 -2.69 6.81 -24.58 -0.17 -2.86 16 15 C 0.15 3.74 5.89 -2.53 -0.01 3.72 16 16 N -0.60 -15.80 3.39 -170.07 -0.58 -16.38 16 17 C -0.22 -6.29 10.27 -15.06 -0.15 -6.44 16 18 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 20 N -0.92 -26.96 10.09 55.49 0.56 -26.40 16 21 Si 0.92 22.23 29.55 -169.99 -5.02 17.21 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 C 0.12 2.65 7.00 -3.06 -0.02 2.63 16 26 C -0.19 -2.99 9.04 -39.46 -0.36 -3.35 16 27 C -0.07 -1.08 8.69 -39.41 -0.34 -1.42 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.58 8.10 -51.93 -0.42 0.15 16 32 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.41 2.02 8.82 -40.82 -0.36 1.66 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.11 3.10 5.87 -51.93 -0.30 2.79 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.04 0.80 8.06 -51.92 -0.42 0.38 16 45 H 0.14 2.14 5.84 -52.49 -0.31 1.83 16 46 H 0.14 2.06 6.25 -52.49 -0.33 1.74 16 LS Contribution 372.92 15.07 5.62 5.62 Total: -1.00 -33.26 372.92 -9.47 -42.73 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.06 Total: 1.81 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -2.81 Total: -5.70 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.07 Total: -48.71 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.12 Total: -12.95 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.26 -9.47 -42.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229484035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.185 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds