Wall clock time and date at job start Tue Mar 31 2020 13:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47087 * 2 1 4 4 C 1.50702 * 109.47222 * 180.02562 * 3 2 1 5 5 O 1.21290 * 119.99985 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99884 * 180.02562 * 4 3 2 7 7 C 1.40108 * 119.99908 * 175.47748 * 6 4 3 8 8 C 1.38852 * 120.01295 * 215.09366 * 7 6 4 9 9 C 1.38086 * 119.98124 * 179.74717 * 8 7 6 10 10 C 1.38724 * 120.01802 * 0.55056 * 9 8 7 11 11 O 1.35973 * 119.98868 * 179.72534 * 10 9 8 12 12 C 1.42899 * 117.00214 * 183.19387 * 11 10 9 13 13 H 1.08998 * 110.63921 * 325.57657 * 12 11 10 14 14 C 1.55155 * 110.72032 * 202.43303 * 12 11 10 15 15 C 1.54909 * 101.58016 * 206.13690 * 14 12 11 16 16 N 1.47425 * 104.83652 * 37.00748 * 15 14 12 17 17 C 1.36934 * 125.64941 * 155.90463 * 16 15 14 18 18 H 1.08001 * 119.99763 * 179.97438 * 17 16 15 19 19 C 1.38807 * 119.99905 * 359.97438 * 17 16 15 20 20 N 1.31617 * 120.00265 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99952 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46998 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47334 * 119.99495 * 21 19 17 24 24 H 1.48499 * 109.47325 * 239.99932 * 21 19 17 25 25 C 1.47028 * 108.69906 * 335.87313 * 16 15 14 26 26 C 1.38726 * 120.02797 * 359.70185 * 10 9 8 27 27 C 1.38088 * 120.01511 * 0.02562 * 26 10 9 28 28 H 1.09006 * 109.46848 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47443 * 60.00199 * 1 2 3 30 30 H 1.08995 * 109.47140 * 299.99650 * 1 2 3 31 31 H 1.08998 * 109.47443 * 119.99801 * 2 1 3 32 32 H 1.09004 * 109.47159 * 240.00069 * 2 1 3 33 33 H 1.09005 * 109.47052 * 299.99876 * 3 2 1 34 34 H 1.08999 * 109.47519 * 59.99918 * 3 2 1 35 35 H 0.97000 * 119.99739 * 355.47395 * 6 4 3 36 36 H 1.07997 * 120.00591 * 359.97438 * 8 7 6 37 37 H 1.08000 * 119.98994 * 180.29673 * 9 8 7 38 38 H 1.08999 * 111.00596 * 324.20711 * 14 12 11 39 39 H 1.09000 * 111.00492 * 88.02170 * 14 12 11 40 40 H 1.08992 * 110.36723 * 155.85235 * 15 14 12 41 41 H 1.09002 * 110.36621 * 278.17190 * 15 14 12 42 42 H 0.97001 * 119.99865 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.88049 * 241.64000 * 25 16 15 44 44 H 1.09010 * 109.87798 * 120.47470 * 25 16 15 45 45 H 1.07994 * 119.99017 * 180.02562 * 26 10 9 46 46 H 1.07994 * 120.00717 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1535 0.3921 -0.0006 6 7 4.2208 2.6098 -0.0002 7 6 5.6187 2.6116 0.0949 8 6 6.2660 3.6224 0.7929 9 6 7.6434 3.6208 0.8907 10 6 8.3811 2.6159 0.2820 11 8 9.7377 2.6180 0.3739 12 6 10.4376 1.5935 -0.3351 13 1 9.8626 0.6674 -0.3388 14 6 11.8440 1.3640 0.2785 15 6 12.6272 0.8098 -0.9377 16 7 12.1085 1.5614 -2.0950 17 6 12.7737 1.7715 -3.2734 18 1 12.3049 2.3379 -4.0645 19 6 14.0504 1.2566 -3.4510 20 7 14.6219 0.5668 -2.4867 21 14 14.9575 1.5426 -5.0587 22 1 14.1032 2.3414 -5.9738 23 1 16.2195 2.2780 -4.7909 24 1 15.2707 0.2353 -5.6897 25 6 10.7583 2.0473 -1.7747 26 6 7.7353 1.6086 -0.4200 27 6 6.3576 1.6059 -0.5138 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.7380 3.4485 -0.0658 36 1 5.6921 4.4077 1.2624 37 1 8.1467 4.4043 1.4376 38 1 12.2762 2.3021 0.6269 39 1 11.8038 0.6316 1.0848 40 1 13.6951 0.9907 -0.8156 41 1 12.4337 -0.2559 -1.0599 42 1 15.5142 0.2073 -2.6107 43 1 10.0356 1.6179 -2.4685 44 1 10.7320 3.1354 -1.8350 45 1 8.3102 0.8264 -0.8933 46 1 5.8550 0.8220 -1.0607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229484035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:49 Heat of formation + Delta-G solvation = -43.969189 kcal Electronic energy + Delta-G solvation = -25833.440287 eV Core-core repulsion = 22109.188009 eV Total energy + Delta-G solvation = -3724.252278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.72008 -40.87805 -39.12580 -37.75668 -35.43678 -35.30057 -34.26715 -32.08638 -31.31733 -30.31077 -29.13918 -28.20626 -26.54012 -24.37412 -23.88164 -22.50043 -22.14567 -21.57203 -21.16394 -19.40922 -19.06522 -18.49523 -18.00880 -17.13352 -16.88689 -16.62954 -16.43299 -15.67185 -15.54828 -15.48537 -15.18143 -15.06884 -14.51690 -14.41317 -14.22126 -13.99446 -13.71660 -13.63646 -13.57508 -13.13549 -12.96386 -12.85290 -12.72467 -12.66216 -12.41864 -12.07911 -12.03050 -12.01986 -11.91930 -11.71525 -11.62145 -11.41190 -10.96623 -10.81199 -10.71212 -10.00410 -8.98664 -8.72082 -7.83018 -5.28987 0.28361 0.35540 1.45437 1.46797 1.57330 1.60084 2.06583 2.18940 2.47688 2.77500 3.27816 3.57037 3.63929 3.69376 3.84050 3.90841 3.92916 4.00393 4.05896 4.12994 4.25367 4.41100 4.50101 4.53864 4.58857 4.68061 4.71952 4.76251 4.79548 4.83144 4.91170 4.93460 4.98584 5.12826 5.25333 5.28082 5.30643 5.39228 5.41731 5.43494 5.47963 5.52705 5.71392 5.87253 6.23223 6.45490 6.48000 7.04154 7.19668 7.68796 8.32160 9.19544 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021758 B = 0.002255 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.558968 B =12413.407765 C =12981.031344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.127 4.127 4 C 0.501 3.499 5 O -0.572 6.572 6 N -0.657 5.657 7 C 0.095 3.905 8 C -0.089 4.089 9 C -0.139 4.139 10 C 0.100 3.900 11 O -0.311 6.311 12 C 0.085 3.915 13 H 0.088 0.912 14 C -0.122 4.122 15 C 0.154 3.846 16 N -0.623 5.623 17 C -0.244 4.244 18 H 0.080 0.920 19 C -0.065 4.065 20 N -0.948 5.948 21 Si 0.985 3.015 22 H -0.268 1.268 23 H -0.287 1.287 24 H -0.290 1.290 25 C 0.120 3.880 26 C -0.204 4.204 27 C -0.094 4.094 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.430 0.570 36 H 0.174 0.826 37 H 0.152 0.848 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.085 0.915 41 H -0.002 1.002 42 H 0.250 0.750 43 H 0.026 0.974 44 H 0.028 0.972 45 H 0.121 0.879 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.780 6.824 8.989 30.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.167 4.167 4 C 0.292 3.708 5 O -0.450 6.450 6 N -0.305 5.305 7 C 0.001 3.999 8 C -0.109 4.109 9 C -0.158 4.158 10 C 0.055 3.945 11 O -0.224 6.224 12 C 0.028 3.972 13 H 0.106 0.894 14 C -0.160 4.160 15 C 0.030 3.970 16 N -0.350 5.350 17 C -0.372 4.372 18 H 0.097 0.903 19 C -0.258 4.258 20 N -0.597 5.597 21 Si 0.813 3.187 22 H -0.192 1.192 23 H -0.214 1.214 24 H -0.217 1.217 25 C -0.006 4.006 26 C -0.224 4.224 27 C -0.114 4.114 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.270 0.730 36 H 0.191 0.809 37 H 0.169 0.831 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.016 0.984 42 H 0.060 0.940 43 H 0.044 0.956 44 H 0.046 0.954 45 H 0.139 0.861 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -28.132 6.172 9.001 30.175 hybrid contribution 0.821 -0.263 -1.197 1.475 sum -27.311 5.909 7.804 29.012 Atomic orbital electron populations 1.21751 0.93498 1.02301 1.02924 1.21287 0.96892 0.95119 1.01903 1.21775 0.87391 1.00217 1.07281 1.21805 0.92253 0.82673 0.74114 1.90724 1.71396 1.33114 1.49786 1.43425 1.03844 1.10609 1.72605 1.17736 0.83829 0.97964 1.00395 1.21010 0.93113 0.99195 0.97533 1.20546 0.93418 0.98663 1.03156 1.19416 0.82668 0.95515 0.96907 1.86125 1.16163 1.52014 1.68117 1.23340 0.93180 0.89585 0.91088 0.89388 1.23009 0.92312 1.02121 0.98573 1.21789 0.99700 0.92033 0.83508 1.44676 1.13469 1.62360 1.14522 1.19474 0.97411 1.28574 0.91769 0.90251 1.25687 0.98071 1.00099 1.01917 1.70005 1.15378 1.41235 1.33067 0.84911 0.78138 0.77135 0.78504 1.19246 1.21419 1.21675 1.21746 0.87310 0.97166 0.94364 1.21248 0.95566 1.00519 1.05032 1.21005 0.92564 0.99237 0.98624 0.92739 0.91504 0.91383 0.93061 0.93172 0.85867 0.85652 0.73031 0.80892 0.83065 0.90837 0.88582 0.89756 0.98380 0.93993 0.95644 0.95369 0.86078 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 71.98 0.71 -0.40 16 2 C -0.11 -1.43 5.22 30.59 0.16 -1.27 16 3 C -0.13 -1.06 5.70 29.85 0.17 -0.89 16 4 C 0.50 8.95 7.67 87.66 0.67 9.62 16 5 O -0.57 -16.33 13.44 -3.06 -0.04 -16.37 16 6 N -0.66 -9.54 5.34 -303.39 -1.62 -11.16 16 7 C 0.09 2.08 6.30 38.11 0.24 2.32 16 8 C -0.09 -1.64 9.96 22.38 0.22 -1.41 16 9 C -0.14 -3.32 9.98 22.35 0.22 -3.10 16 10 C 0.10 3.13 6.67 22.50 0.15 3.28 16 11 O -0.31 -11.06 9.87 -93.24 -0.92 -11.98 16 12 C 0.08 3.26 2.82 31.78 0.09 3.35 16 13 H 0.09 3.21 5.92 -2.39 -0.01 3.20 16 14 C -0.12 -4.85 6.81 31.99 0.22 -4.63 16 15 C 0.15 7.86 5.89 86.86 0.51 8.37 16 16 N -0.62 -33.77 3.39 -691.99 -2.35 -36.12 16 17 C -0.24 -14.16 10.27 84.03 0.86 -13.29 16 18 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 19 C -0.07 -3.76 5.49 84.86 0.47 -3.30 16 20 N -0.95 -56.96 10.09 21.65 0.22 -56.74 16 21 Si 0.99 46.36 29.55 68.60 2.03 48.39 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 C 0.12 5.44 7.00 86.73 0.61 6.05 16 26 C -0.20 -6.49 9.04 22.35 0.20 -6.29 16 27 C -0.09 -2.73 8.69 22.38 0.19 -2.54 16 28 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.07 0.35 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 32 H 0.05 0.82 8.10 -2.39 -0.02 0.81 16 33 H 0.12 0.41 8.14 -2.38 -0.02 0.39 16 34 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.43 2.34 8.82 -92.71 -0.82 1.52 16 36 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 38 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.08 4.80 5.87 -2.39 -0.01 4.79 16 41 H 0.00 -0.10 8.14 -2.39 -0.02 -0.11 16 42 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 43 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.03 1.31 8.06 -2.38 -0.02 1.29 16 45 H 0.12 4.05 5.84 -2.91 -0.02 4.03 16 46 H 0.12 3.90 6.25 -2.91 -0.02 3.88 16 Total: -1.00 -75.95 372.92 3.18 -72.77 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.17 Total: 15.35 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 5.70 Total: -4.13 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -3.75 Total: -104.03 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.96 Total: -28.35 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -75.95 3.18 -72.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229484035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.801 kcal (2) G-P(sol) polarization free energy of solvation -75.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds