Wall clock time and date at job start Tue Mar 31 2020 13:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.50701 * 120.00002 * 2 1 4 4 C 1.32997 * 120.00303 * 179.97438 * 2 1 3 5 5 C 1.47103 * 119.99822 * 0.02562 * 4 2 1 6 6 O 1.21612 * 120.00021 * 359.97438 * 5 4 2 7 7 N 1.34770 * 120.00033 * 179.97438 * 5 4 2 8 8 C 1.48475 * 127.22724 * 5.60152 * 7 5 4 9 9 C 1.54937 * 103.09951 * 219.18085 * 8 7 5 10 10 C 1.54576 * 102.85924 * 322.30651 * 9 8 7 11 11 H 1.09007 * 117.58555 * 242.93757 * 10 9 8 12 12 C 1.52936 * 118.93931 * 85.44705 * 10 9 8 13 13 C 1.47526 * 127.04503 * 184.98881 * 7 5 4 14 14 C 1.50705 * 117.37306 * 295.06557 * 13 7 5 15 15 O 1.21278 * 119.99927 * 129.62980 * 14 13 7 16 16 N 1.34779 * 119.99731 * 309.91035 * 14 13 7 17 17 C 1.47067 * 136.05772 * 4.38883 * 16 14 13 18 18 C 1.53758 * 87.88421 * 152.96497 * 17 16 14 19 19 C 1.50700 * 114.08637 * 139.78274 * 18 17 16 20 20 H 1.08004 * 120.00005 * 266.56391 * 19 18 17 21 21 C 1.37877 * 120.00174 * 86.56042 * 19 18 17 22 22 N 1.31513 * 119.99854 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99914 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47278 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47495 * 119.99829 * 23 21 19 26 26 H 1.48503 * 109.46774 * 239.99883 * 23 21 19 27 27 C 1.47059 * 136.05373 * 184.76476 * 16 14 13 28 28 H 1.09003 * 109.47176 * 239.99865 * 1 2 3 29 29 H 1.09003 * 109.47139 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47456 * 119.99956 * 1 2 3 31 31 H 1.09002 * 109.46969 * 269.99930 * 3 2 1 32 32 H 1.08997 * 109.47140 * 29.99826 * 3 2 1 33 33 H 1.09005 * 109.47301 * 150.00214 * 3 2 1 34 34 H 1.07999 * 119.99805 * 179.97438 * 4 2 1 35 35 H 1.09001 * 110.96363 * 100.68605 * 8 7 5 36 36 H 1.08998 * 110.65487 * 337.53098 * 8 7 5 37 37 H 1.09000 * 110.74013 * 203.95761 * 9 8 7 38 38 H 1.09002 * 110.73556 * 80.64323 * 9 8 7 39 39 H 1.08996 * 117.45784 * 161.19070 * 12 10 9 40 40 H 1.08997 * 117.45135 * 16.40893 * 12 10 9 41 41 H 1.08998 * 113.47086 * 267.69807 * 17 16 14 42 42 H 1.08999 * 113.46365 * 38.14531 * 17 16 14 43 43 H 1.09004 * 114.57644 * 272.66332 * 18 17 16 44 44 H 0.97005 * 119.99614 * 180.02562 * 22 21 19 45 45 H 1.09000 * 113.47526 * 321.86103 * 27 16 14 46 46 H 1.08998 * 113.47269 * 92.24565 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 1.4365 -2.4257 0.0005 6 8 0.2204 -2.4257 0.0005 7 7 2.1104 -3.5929 0.0005 8 6 3.5784 -3.7824 0.1159 9 6 3.8620 -4.9395 -0.8747 10 6 2.6330 -5.8589 -0.6907 11 1 2.8080 -6.8655 -0.3108 12 6 1.3634 -5.5662 -1.4916 13 6 1.5389 -4.9491 -0.1019 14 6 0.6582 -5.4170 1.0280 15 8 -0.4332 -5.8896 0.7904 16 7 1.0811 -5.3051 2.3028 17 6 2.2523 -4.7325 2.9835 18 6 1.3632 -4.5318 4.2218 19 6 2.0473 -4.8452 5.5275 20 1 1.9586 -5.8306 5.9607 21 6 2.7864 -3.8741 6.1690 22 7 2.8948 -2.6744 5.6412 23 14 3.6350 -4.2629 7.7871 24 1 3.3599 -5.6726 8.1642 25 1 5.0994 -4.0667 7.6379 26 1 3.1198 -3.3581 8.8461 27 6 0.5778 -5.7077 3.6246 28 1 -0.3634 -0.5139 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 2.4421 1.6197 -1.0277 32 1 1.6713 2.0647 0.5138 33 1 3.2129 1.1748 0.5138 34 1 3.2520 -1.1517 0.0001 35 1 3.8562 -4.0680 1.1305 36 1 4.1077 -2.8789 -0.1865 37 1 4.7793 -5.4627 -0.6047 38 1 3.9157 -4.5672 -1.8978 39 1 0.6376 -6.3726 -1.5954 40 1 1.4535 -4.9021 -2.3513 41 1 3.0578 -5.4501 3.1392 42 1 2.5985 -3.7989 2.5402 43 1 0.8144 -3.5901 4.2381 44 1 3.4152 -1.9913 6.0924 45 1 -0.5025 -5.6050 3.7276 46 1 0.9410 -6.6828 3.9489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268877731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:10 Heat of formation + Delta-G solvation = 26.320442 kcal Electronic energy + Delta-G solvation = -28047.049510 eV Core-core repulsion = 24325.845219 eV Total energy + Delta-G solvation = -3721.204291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80359 -39.02820 -38.25161 -36.80776 -35.20769 -33.12487 -32.67989 -30.49325 -29.19832 -28.03299 -27.60099 -25.54395 -25.02506 -23.73605 -23.19289 -21.38450 -20.69090 -19.67887 -18.43582 -17.64222 -17.15680 -16.65705 -16.10145 -15.92280 -15.16062 -14.73431 -14.62722 -14.35166 -14.17119 -14.12964 -13.61839 -13.59300 -13.39907 -12.86184 -12.67052 -12.42429 -12.41412 -12.25761 -12.05325 -11.85785 -11.67409 -11.53628 -11.51319 -11.31711 -11.07685 -11.00125 -10.84935 -10.63655 -10.40952 -10.20947 -9.51475 -9.34692 -9.22701 -9.10684 -9.01688 -8.59492 -8.37922 -7.81406 -6.18760 -4.24494 1.50046 2.64761 3.19353 3.20834 3.29963 3.33330 3.43485 3.48047 3.80234 4.31867 4.43608 4.53323 4.69963 4.87011 4.89513 5.02800 5.09639 5.10715 5.14135 5.27020 5.41738 5.45772 5.55051 5.57299 5.69090 5.72853 5.77492 5.79770 5.87035 5.99602 6.04435 6.12037 6.14847 6.18878 6.27356 6.37952 6.46989 6.54342 6.58790 6.63532 6.71539 6.83290 7.56561 7.71052 7.79055 8.17955 8.43138 8.54069 8.79433 8.81374 9.42011 10.90644 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010147 B = 0.005167 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.883576 B = 5417.354613 C = 6781.406694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.032 4.032 3 C -0.124 4.124 4 C -0.227 4.227 5 C 0.566 3.434 6 O -0.525 6.525 7 N -0.583 5.583 8 C 0.097 3.903 9 C -0.104 4.104 10 C -0.145 4.145 11 H 0.124 0.876 12 C -0.117 4.117 13 C 0.067 3.933 14 C 0.574 3.426 15 O -0.553 6.553 16 N -0.632 5.632 17 C 0.101 3.899 18 C 0.036 3.964 19 C -0.516 4.516 20 H 0.064 0.936 21 C 0.069 3.931 22 N -0.884 5.884 23 Si 0.894 3.106 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.099 3.901 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.263 0.737 45 H 0.057 0.943 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.931 2.639 -13.816 15.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.034 4.034 3 C -0.181 4.181 4 C -0.248 4.248 5 C 0.359 3.641 6 O -0.403 6.403 7 N -0.319 5.319 8 C -0.025 4.025 9 C -0.142 4.142 10 C -0.164 4.164 11 H 0.142 0.858 12 C -0.156 4.156 13 C -0.023 4.023 14 C 0.362 3.638 15 O -0.432 6.432 16 N -0.364 5.364 17 C -0.021 4.021 18 C 0.017 3.983 19 C -0.554 4.554 20 H 0.082 0.918 21 C -0.135 4.135 22 N -0.520 5.520 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.023 4.023 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.143 0.857 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.133 0.867 40 H 0.119 0.881 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.658 2.681 -14.093 15.083 hybrid contribution 0.790 -0.166 0.951 1.247 sum 5.448 2.515 -13.142 14.447 Atomic orbital electron populations 1.21056 0.90824 1.00923 1.04520 1.22544 0.96934 0.94384 0.89542 1.20998 1.00281 0.94299 1.02522 1.22247 0.99881 0.91380 1.11282 1.18262 0.86923 0.82813 0.76085 1.90821 1.13498 1.86625 1.49309 1.48172 1.07126 1.02939 1.73622 1.22983 0.80059 0.98829 1.00658 1.22388 0.96718 0.95129 0.99928 1.23760 0.89640 0.99144 1.03894 0.85823 1.23346 0.97281 1.01977 0.92991 1.21416 1.01931 0.83594 0.95313 1.18717 0.85656 0.78281 0.81196 1.90632 1.21086 1.48047 1.83417 1.49823 1.26002 1.56719 1.03906 1.23666 0.89716 0.96203 0.92521 1.20372 0.92249 0.93608 0.92059 1.20946 1.31145 0.98121 1.05176 0.91804 1.25024 0.96146 0.94782 0.97521 1.69982 1.39969 1.03020 1.39072 0.86501 0.79172 0.78663 0.83483 1.19565 1.20916 1.20880 1.23367 0.99400 1.00586 0.78944 0.89619 0.93055 0.90144 0.90574 0.90905 0.91000 0.85726 0.89535 0.89523 0.89156 0.90380 0.86744 0.88140 0.91094 0.92173 0.91502 0.92769 0.92485 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 8.33 36.00 0.30 -1.37 16 2 C -0.03 -0.43 6.11 -101.17 -0.62 -1.04 16 3 C -0.12 -1.18 9.98 36.01 0.36 -0.82 16 4 C -0.23 -3.26 9.16 -37.80 -0.35 -3.61 16 5 C 0.57 10.18 7.79 -12.67 -0.10 10.08 16 6 O -0.53 -11.31 13.42 5.27 0.07 -11.23 16 7 N -0.58 -9.48 2.55 -157.36 -0.40 -9.88 16 8 C 0.10 1.19 6.54 -1.93 -0.01 1.18 16 9 C -0.10 -1.03 6.88 -24.88 -0.17 -1.20 16 10 C -0.15 -1.84 6.89 -89.30 -0.62 -2.46 16 11 H 0.12 1.47 8.14 -51.92 -0.42 1.05 16 12 C -0.12 -1.66 9.85 -26.73 -0.26 -1.92 16 13 C 0.07 1.16 2.21 -131.85 -0.29 0.87 16 14 C 0.57 12.54 7.80 -10.98 -0.09 12.46 16 15 O -0.55 -13.75 17.53 5.56 0.10 -13.65 16 16 N -0.63 -13.80 3.69 -185.06 -0.68 -14.48 16 17 C 0.10 2.18 6.97 -8.37 -0.06 2.12 16 18 C 0.04 0.88 3.80 -91.12 -0.35 0.54 16 19 C -0.52 -13.19 8.82 -34.44 -0.30 -13.49 16 20 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.88 -23.92 13.26 55.43 0.74 -23.19 16 23 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 C 0.10 2.19 8.18 -8.51 -0.07 2.12 16 28 H 0.09 1.48 7.22 -51.93 -0.37 1.11 16 29 H 0.05 0.59 7.94 -51.93 -0.41 0.17 16 30 H 0.08 1.22 7.22 -51.93 -0.37 0.85 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 33 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 34 H 0.12 1.46 6.61 -52.49 -0.35 1.11 16 35 H 0.09 1.18 6.00 -51.93 -0.31 0.87 16 36 H 0.09 0.85 6.56 -51.93 -0.34 0.51 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.11 1.64 8.05 -51.93 -0.42 1.22 16 40 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 42 H 0.06 1.31 6.00 -51.93 -0.31 1.00 16 43 H 0.07 1.83 8.11 -51.93 -0.42 1.41 16 44 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 LS Contribution 377.07 15.07 5.68 5.68 Total: -1.00 -32.87 377.07 -9.31 -42.18 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.07 Total: 4.55 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -2.72 Total: 5.12 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.35 Total: -47.55 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: 0.17 Total: -24.89 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.87 -9.31 -42.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268877731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.504 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds